|
|
Properties
| Property Name | Value |
|---|
| Product | Plastid lipid-associated protein/fibrillin conserved domain protein |
| Orig transcript id | gnl|cribi|Naga_100117g13.406.mrna |
| Orig protein id | gnl|cribi|Naga_100117g13.406 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:466956..468153 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6060 ID=rna6060|Name=rna6060|organism=Nannochloropsis gaditana|type=mRNA|length=1113bp
ATGCAGCCTCTCCAGGCTTATTGCCTATTAGGCGCCCTGCTCACGAGCTT
TGGTGCGAGCCGTGCGTTTCTTATCATTCCGAGAAGCCGCCTCAGCTCTA
GCACTTTTGCCAGGCGCTGTAACATCGCGATTAGGATGAGCACCAAAGAT
GAAGTAGACACGACATCGAAATCAAGTACACCGCTACCGTCGGCTCCGCT
GGGAGGCATGCCACCCGCACCGCCCGCGAGTGTGGGGCGGCGAAGGCCGG
ATCCGGAAAAGGGTGCATCCTACTTTGATTTTGAGGATGAGACAGCGCCG
AGCGTGCCGCAGCAGTTGGAAGGCGATTTACTTCGTGACGGAGGGGTTAT
GAAAACCATTATCACGGCGGGGGAGGGGCCTTTGGTGACGCCGGGCGCGG
AAGTAGCTGTCAAGTACGAAGGTCGTACGGCGGACGGGCAGGTGCTGTGC
CGGGGGGAGGACTTCAGATTTTTGCAGGGGGATGGGACAATGATCGGCGG
GTTTGAGACAGCGGTCGGCTCCATGCGTGTAGGAGAGGTGGCCCGAGTCC
AAATTCAGCCATGGTACGCTTACGGGAGCGCTGGAGTGAGTCCCGTCGTC
GGCCCCGACATGCCCCTGGACTTTGATATTGAAGTCTTGGAGGCATCAGG
AAACTTCCTGAACCCGAAGTCCTTCCGGGACGTTGACCCGAAAAAACTCC
GTGACGCGAAATCCATTGCTCGTGACTACGCGCAGCGCTCGGAACTGCGG
ATGCGAAACGAAGAGGGCCTAAGCAATGCCGAGAAGGCCTCGCGCTGGTT
CAAGTCCCTCTATTTCTTCGGGTTTTTCGAGGGAGAGACGGGCGAGCGCC
CGCCCTGGTATTTGACCCCTACCATCACCTTTCCCATCATAGAGACCTGG
TGCTGGAGGACAGTGTGGACCTGGGGGCGGCTTTCCTGGATCAAATCTTT
GCTTAATTATCCCTGCCTGCACGCAGATGTTCCATACCGCCAGAGGGTTT
TCCCCATCGTTGCTGGGCCTCTCGGGGCGAGAGCGTGTATACAAAAGATG
TTTCCGGGAAGTAAAGTCGCTGACAACACACTGGCTGGCCATCCAGATCT
ATCTCTGCCATGA back to topprotein sequence of rna6060 >rna6060-protein ID=rna6060-protein|Name=rna6060|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQ
PPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKM
TIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGV
IKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVT
FEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDE
AFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHP
RC back to topmRNA from alignment at CM002467.1:466956..468153+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6060 ID=rna6060|Name=rna6060|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp|location=Sequence derived from alignment at CM002467.1:466956..468153+ (Nannochloropsis gaditana)
ATGCGATACCGAAATCGAATCAACAAGACGACGTCAAATCGTGTCATGAA
AAAAATCTTCATAATCGTGATCCTGACATTGCTCCAAGGATCCATTCTGG
GATACCGGTAGGTTTAATTCGGCCAACATATGGTACTCCCCTTGACCTCT
GCCTGGGTACCCCCCACTCGCCCTGTCACTGTCCCTGTTAAGGCATCCCG
AGTGTAACATACGTATCTTTGTTTCATATTTAAAACGCATGTACTATCAC
TATTTTGTGTCGGAGGAATGTACGCTCTTGTCCATGCATTTTTCCAAGCG
CTTGTCCCATCGTTGCACCGCAACAGGCTCCTACCAGCCATTGGCAAACG
TTGGCGGCGACGCCGGCAGCCTCCCACAGTGGTTTTGCCCAGCATTGACT
CTTTTCAGCTCATACCGGACCAGCAAAAAGTCCAAGCgcagggctggagg
gatTCCTTGGTCAGCATAGGGAAGCAACTCTCTACATCGGGCATACTTCC
CAGCAAGGCACAGAAAATGACGATCCGAAGCATTGCAGTAGCGCTAGAGA
CCGTTAAACCCATGCCTACCAGGGCGCCCGCTTTGTCTTCCATGGTGCAG
GGACGATGGTCTCTTCTGTACACGGACGCCCCGGGCATCAGCTCGGGGCG
GATCGGGCCCTTCGGGGTCATCAAGGGCCGGGTCTCCCAGGAGGTCGAGC
TGGCGAGCAAGGCGTACACAAATATACTGCGCGTGGCGAAACCAGGGCAT
GAACCGTGGCTGGAGGCACGCTTGACGGCCAGCTTCGATGTCTTGAACGA
CACGGACTGGGAGGTGACTTTCGAAGACGTCGTGGGGCTCTTACGGGGAA
AGCAGGTGGTGAGGCAGGTCTTCTCAGGCGTTCAACGAATATGGACGCAC
ACATATCTGGATCCTACTGGACGCGTGCGGGTAatgcgggcgaggaggcc
ggAGCGACAGCCGGATgaggccttcctctttgtgtTCGTCCGTGAGGGTG
ACGGCTGCTCAGGCGCTTTTGGTCGGTGACGGCGGGTTCGCAGCCCTTTA
TAGCACAGAATGGAGAAAACCCGCAATGTAAAAGTACATAGTGTCCAATA
AATCCGCCTACTCACTTTGTCCGGCATGTAGCTTGATAGTATTTAGCAGA
CATTCTTTGGAAGGAAGCATGGATCGTTCGAGGCATCCAAGATGTTAA back to topCoding sequence (CDS) from alignment at CM002467.1:466956..468153+ >rna6060 ID=rna6060|Name=rna6060|organism=Nannochloropsis gaditana|type=CDS|length=2727bp|location=Sequence derived from alignment at CM002467.1:466956..468153+ (Nannochloropsis gaditana)
ATGCGATACCGAAATCGAATCAACAAGACGACGTCAAATCGTGTCATGAA
AAAAATCTTCATAATCGTGATCCTGACATTGCTCCAAGGATCCATTCTGG
GATACCGGCTCCTACCAGCCATTGGCAAACGTTGGCGGCGACGCCGGCAG
CCTCCCACAGTGGTTTTGCCCAGCATTGACTCTTTTCAGCTCATACCGGA
CCAGCAAAAAGTCCAAGCgcagggctggagggatTCCTTGGTCAGCATAG
GGAAGCAACTCTCTACATCGGGCATACTTCCCAGCAAGGCACAGAAAATG
ACGATCCGAAGCATTGCAGTAGCGCTAGAGACCGTTAAACCCATGCCTAC
CAGGGCGCCCGCTTTGTCTTCCATGGTGCAGGGACGATGGTCTCTTCTGT
ACACGGACGCCCCGGGCATCAGCTCGGGGCGGATCGGGCCCTTCGGGGTC
ATCAAGGGCCGGGTCTCCCAGGAGGTCGAGCTGGCGAGCAAGGCGTACAC
AAATATACTGCGCGTGGCGAAACCAGGGCATGAACCGTGGCTGGAGGCAC
GCTTGACGGCCAGCTTCGATGTCTTGAACGACACGGACTGGGAGGTGACT
TTCGAAGACGTCGTGGGGCTCTTACGGGGAAAGCAGGTGGTGAGGCAGGT
CTTCTCAGGCGTTCAACGAATATGGACGCACACATATCTGGATCCTACTG
GACGCGTGCGGGTAatgcgggcgaggaggccggAGCGACAGCCGGATgag
gccttcctctttgtgtTCGTCCGTGAGGGTGACGGCTGCTCAGGCGCTTT
TGTGTCCAATAAATCCGCCTACTCACTTTGTCCGGCATGTAGCTTGATAG
TATTTAGCAGACATTCTTTGGAAGGAAGCATGGATCGTTCGAGGCATCCA
AGATGTTAAATGCGATACCGAAATCGAATCAACAAGACGACGTCAAATCG
TGTCATGAAAAAAATCTTCATAATCGTGATCCTGACATTGCTCCAAGGAT
CCATTCTGGGATACCGGCTCCTACCAGCCATTGGCAAACGTTGGCGGCGA
CGCCGGCAGCCTCCCACAGTGGTTTTGCCCAGCATTGACTCTTTTCAGCT
CATACCGGACCAGCAAAAAGTCCAAGCgcagggctggagggatTCCTTGG
TCAGCATAGGGAAGCAACTCTCTACATCGGGCATACTTCCCAGCAAGGCA
CAGAAAATGACGATCCGAAGCATTGCAGTAGCGCTAGAGACCGTTAAACC
CATGCCTACCAGGGCGCCCGCTTTGTCTTCCATGGTGCAGGGACGATGGT
CTCTTCTGTACACGGACGCCCCGGGCATCAGCTCGGGGCGGATCGGGCCC
TTCGGGGTCATCAAGGGCCGGGTCTCCCAGGAGGTCGAGCTGGCGAGCAA
GGCGTACACAAATATACTGCGCGTGGCGAAACCAGGGCATGAACCGTGGC
TGGAGGCACGCTTGACGGCCAGCTTCGATGTCTTGAACGACACGGACTGG
GAGGTGACTTTCGAAGACGTCGTGGGGCTCTTACGGGGAAAGCAGGTGGT
GAGGCAGGTCTTCTCAGGCGTTCAACGAATATGGACGCACACATATCTGG
ATCCTACTGGACGCGTGCGGGTAatgcgggcgaggaggccggAGCGACAG
CCGGATgaggccttcctctttgtgtTCGTCCGTGAGGGTGACGGCTGCTC
AGGCGCTTTTGTGTCCAATAAATCCGCCTACTCACTTTGTCCGGCATGTA
GCTTGATAGTATTTAGCAGACATTCTTTGGAAGGAAGCATGGATCGTTCG
AGGCATCCAAGATGTTAAATGCGATACCGAAATCGAATCAACAAGACGAC
GTCAAATCGTGTCATGAAAAAAATCTTCATAATCGTGATCCTGACATTGC
TCCAAGGATCCATTCTGGGATACCGGCTCCTACCAGCCATTGGCAAACGT
TGGCGGCGACGCCGGCAGCCTCCCACAGTGGTTTTGCCCAGCATTGACTC
TTTTCAGCTCATACCGGACCAGCAAAAAGTCCAAGCgcagggctggaggg
atTCCTTGGTCAGCATAGGGAAGCAACTCTCTACATCGGGCATACTTCCC
AGCAAGGCACAGAAAATGACGATCCGAAGCATTGCAGTAGCGCTAGAGAC
CGTTAAACCCATGCCTACCAGGGCGCCCGCTTTGTCTTCCATGGTGCAGG
GACGATGGTCTCTTCTGTACACGGACGCCCCGGGCATCAGCTCGGGGCGG
ATCGGGCCCTTCGGGGTCATCAAGGGCCGGGTCTCCCAGGAGGTCGAGCT
GGCGAGCAAGGCGTACACAAATATACTGCGCGTGGCGAAACCAGGGCATG
AACCGTGGCTGGAGGCACGCTTGACGGCCAGCTTCGATGTCTTGAACGAC
ACGGACTGGGAGGTGACTTTCGAAGACGTCGTGGGGCTCTTACGGGGAAA
GCAGGTGGTGAGGCAGGTCTTCTCAGGCGTTCAACGAATATGGACGCACA
CATATCTGGATCCTACTGGACGCGTGCGGGTAatgcgggcgaggaggccg
gAGCGACAGCCGGATgaggccttcctctttgtgtTCGTCCGTGAGGGTGA
CGGCTGCTCAGGCGCTTTTGTGTCCAATAAATCCGCCTACTCACTTTGTC
CGGCATGTAGCTTGATAGTATTTAGCAGACATTCTTTGGAAGGAAGCATG
GATCGTTCGAGGCATCCAAGATGTTAA back to top
|