EWM24627.1, cds6045 (CDS) Nannochloropsis gaditana

Overview
NameEWM24627.1
Unique Namecds6045
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:466956..467062 +
Alignment locationCM002467.1:467282..467976 +
Alignment locationCM002467.1:468047..468153 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24627.1
ProductPlastid lipid-associated protein/fibrillin conserved domain protein
Orig transcript idgnl|cribi|Naga_100117g13.406.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:466956..467062 +
CM002467.1supercontigCM002467.1:467282..467976 +
CM002467.1supercontigCM002467.1:468047..468153 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|585106147|gb|EWM24627.1| (Plastid lipid-associated protein/fibrillin conserved domain protein [Nannochloropsis gaditana])

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:    1 MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC 302
            MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC
Sbjct:    1 MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC 302          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|298714517|emb|CBJ27539.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 1.365e-17
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 0
Query:  116 PTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVR 258
            PT+    S +  G W L+YT  PG S G++GPF    G V QEV++A   Y N +R+        L  RL A++DV+N + W+V F+ +  LL G+Q+V+        +WT +YLD    +RV+ AR  ER  D   ++V  R
Sbjct:   99 PTKDITTSELATGTWDLIYTTTPGASGGKLGPF---IGEVQQEVDIAEGLYVNYVRLGP------LTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNELDQAG-LWTLSYLDDD--MRVLTARSLER--DTGNVYVLAR 227          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|255072501|ref|XP_002499925.1| (predicted protein [Micromonas commoda] >gi|226515187|gb|ACO61183.1| predicted protein [Micromonas commoda])

HSP 1 Score: 82.8037 bits (203), Expect = 1.921e-15
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 0
Query:   91 GILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFS-GVQRIWTHTYLDPTGRV----RVMRARRPE 245
            G+  + AQ+  I      LE + P  T  P+ S  ++G W + Y++AP  S+G +GPF   KG   QE+ LA   Y N L V  P ++ WL ARL A +  ++DT W VTF DV   + G  +  + F     R+W H+++  T RV    R M   R E
Sbjct:   13 GLTCTDAQRAAIEDAIARLEALNP--TAVPSDSLALEGAWEVTYSNAPPPSNGSLGPF---KGTAYQEINLADGTYVNRLTV--PPND-WLGARLRADWTRVDDTLWLVTFRDVTVSVLGFDLFTKAFDEETTRVWEHSFVSETHRVVRAARTMEGLRRE 164          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|303271735|ref|XP_003055229.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463203|gb|EEH60481.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 80.8777 bits (198), Expect = 4.361e-14
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 0
Query:  108 ALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFD-VLNDTD---WEVTFEDV-VGLLRGK-QVVRQVFSGVQRIWTHTYLDPTGRVRVMRARR 243
            ALE + P  T  PA S++V GRW ++++ AP  S+G +GPF   KG   QE+ L + +Y N+L +  P ++ WL ARL A+F  V+ND+    W VTF+ V V L  G      + F    R+W  T++D     RV+RA R
Sbjct:  110 ALEALNP--TSNPANSALVDGRWEVVFSTAPPPSNGSLGPF---KGTAFQEISLENGSYVNVLSI--PPND-WLGARLVATFAPVMNDSRGELWTVTFDAVAVTLFDGAFSPFAKTFKDTTRVWRTTFID--AETRVVRAAR 241          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|551656805|ref|XP_005831175.1| (hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712] >gi|428175304|gb|EKX44195.1| hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712])

HSP 1 Score: 75.0998 bits (183), Expect = 1.381e-12
Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 0
Query:  108 ALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQR------------------------IWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
            A E  K  PT+  A S M+ G+W L+++   G SSG +GPF    G V Q++ L  + Y NIL +       ++EA L+A +DV+    W V F+D+   L G  V ++ FS  QR                        IW   Y + T  +RV+ A   +R+  +A ++V  RE
Sbjct:   32 ATELAKLNPTQRQATSPMLDGKWRLVFSTTKGPSSGMLGPF---VGDVFQDIVLEQEKYFNILELG------FVEAVLSAHWDVMGQEKWRVFFDDIQFSLFGIPVFKKEFSSSQRDQVLEGLDTLGGTEKEARSSNNGGIWDMAYCNDT--LRVLWAYGVQREASKASIYVLERE 196          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|873242549|emb|CEL91638.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 75.8702 bits (185), Expect = 1.924e-12
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   90 SGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEA 251
            +GI  + A++  I S+   LE+  P+  +A A S  + G W L+YT  PG S+G++GPF    G V+Q +++ S  Y N + +        ++A L AS+DVL    W V F+++   + G  + +     V   W  TYLD     R++ AR   +QPD +
Sbjct:   85 NGIKVTPAEREKILSLVKQLESSSPI--KAAAQSKRLNGLWRLVYTTTPGSSAGKLGPF---VGDVTQMIDMDSDVYINYVDIGP------VQAFLEASWDVLGPNRWRVKFQNIGFRVFGIPLAKNELKNVGD-WRMTYLDDD--YRILWARGSRQQPDAS 232          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|224000177|ref|XP_002289761.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974969|gb|EED93298.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.485 bits (184), Expect = 2.799e-12
Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 0
Query:   95 SKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPG----HEPWLEARLTASF--------DVLND------------TDWEVTFEDVVGLLRGKQVVRQVF-SGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
            S++Q+  + S+   LE++ P+    PA    ++G W + YTDAP  S+G++    + KG   Q ++L  + Y N L V   G     + WL A L A +        D  N+            T W+VTFE +   L GK +  Q F +G  R W  TYLD T   R++RA +  R+ D+ +LF   R+
Sbjct:   65 SQSQRNEVHSLLSQLESLCPLS--EPARDPRMEGSWYVYYTDAPPPSNGQL----LWKGIAKQVIDLDGRRYRNELFVGGKGDNKDQDAWLMAMLDADWTEWDGVYLDSENNNTANASGEDFGATTWKVTFESITISLFGKPLFTQQFKAGTSRTWKMTYLDDT--TRIVRAGKTGREDDD-WLFYMTRD 245          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|585102707|gb|EWM22249.1| (harpin binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 74.3294 bits (181), Expect = 6.552e-12
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 0
Query:   77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVV-RQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQP 248
            +  L ++ K    +G+  +++ K  I S+A   E +K  PT+  A S  V G W L+YT   G S+G++GPF    G+V Q+++ A   Y N +R+        +E  L A+++V    +W+V F+D+   + G  +V ++  SG    W  TY+D   R+    A   E +P
Sbjct:   78 KQDLYAVAKN-KDNGLKATESDKAKILSLAS--ELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPF---VGQVLQKIDTAGGDYVNFVRL----FGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKP 240          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|553183473|ref|XP_005853904.1| (hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526] >gi|422295159|gb|EKU22458.1| hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.9442 bits (180), Expect = 9.428e-12
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 0
Query:   77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVV-RQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQP 248
            +  L ++ K    +G+  +++ K  I S+A   E +K  PT+  A S  V G W L+YT   G S+G++GPF    G+V Q+++ A   Y N +R+        +E  L A+++V    +W+V F+D+   + G  +V ++  SG    W  TY+D   R+    A   E +P
Sbjct:   67 KQDLYAVAKN-KDNGLKATESDKAKILSLAS--ELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPF---VGQVLQKIDTAGGDYVNFVRL----FGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKP 229          
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|612385932|ref|XP_007508486.1| (predicted protein [Bathycoccus prasinos] >gi|412985078|emb|CCO20103.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 62.003 bits (149), Expect = 1.395e-7
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 0
Query:   77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVL---NDTDWEVTFEDV-VGLLRGKQ--VVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
            +D L  +  QL+  GI  S+ +K  +      +E        +  + ++  G W ++Y+ AP  S+G++  FG I G   Q ++   K Y N+L +       WL  RL A++++L   N+T W V+F  + V L   K+   V+    G  R W  T+ D     R++RA R + +  +  +FV  RE
Sbjct:   59 KDELEVLCVQLN-KGIDISEREKEEVDERVKNVEKYYQSSLMSSTMENVANGYWRVIYSTAPPPSNGQL--FGPICGTAFQSIDKEEKTYENVLALGN-----WLTLRLKATYEILENTNETRWTVSFRSIQVELFEKKEPVFVKAFPKGTTREWLTTFQD--DEWRIVRAGRTKEEISKN-VFVMRRE 236          
The following BLAST results are available for this feature:
BLAST of EWM24627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106147|gb|EWM24627.1|0.000e+0100.00Plastid lipid-associated protein/fibrillin conserv... [more]
gi|298714517|emb|CBJ27539.1|1.365e-1737.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|255072501|ref|XP_002499925.1|1.921e-1535.63predicted protein [Micromonas commoda] >gi|2265151... [more]
gi|303271735|ref|XP_003055229.1|4.361e-1439.44predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|551656805|ref|XP_005831175.1|1.381e-1231.25hypothetical protein GUITHDRAFT_109982 [Guillardia... [more]
gi|873242549|emb|CEL91638.1|1.924e-1232.10unnamed protein product [Vitrella brassicaformis C... [more]
gi|224000177|ref|XP_002289761.1|2.799e-1231.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|585102707|gb|EWM22249.1|6.552e-1230.06harpin binding protein 1 [Nannochloropsis gaditana... [more]
gi|553183473|ref|XP_005853904.1|9.428e-1230.06hypothetical protein NGA_0463700 [Nannochloropsis ... [more]
gi|612385932|ref|XP_007508486.1|1.395e-728.04predicted protein [Bathycoccus prasinos] >gi|41298... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6060rna6060Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications