EWM24627.1, cds6045 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|585106147|gb|EWM24627.1| (Plastid lipid-associated protein/fibrillin conserved domain protein [Nannochloropsis gaditana]) HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query: 1 MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC 302
MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC
Sbjct: 1 MRYRNRINKTTSNRVMKKIFIIVILTLLQGSILGYRLLPAIGKRWRRRRQPPTVVLPSIDSFQLIPDQQKVQAQGWRDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVREGDGCSGAFVSNKSAYSLCPACSLIVFSRHSLEGSMDRSRHPRC 302
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|298714517|emb|CBJ27539.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.7373 bits (221), Expect = 1.365e-17 Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 0
Query: 116 PTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVR 258
PT+ S + G W L+YT PG S G++GPF G V QEV++A Y N +R+ L RL A++DV+N + W+V F+ + LL G+Q+V+ +WT +YLD +RV+ AR ER D ++V R
Sbjct: 99 PTKDITTSELATGTWDLIYTTTPGASGGKLGPF---IGEVQQEVDIAEGLYVNYVRLGP------LTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNELDQAG-LWTLSYLDDD--MRVLTARSLER--DTGNVYVLAR 227
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|255072501|ref|XP_002499925.1| (predicted protein [Micromonas commoda] >gi|226515187|gb|ACO61183.1| predicted protein [Micromonas commoda]) HSP 1 Score: 82.8037 bits (203), Expect = 1.921e-15 Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 0
Query: 91 GILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFS-GVQRIWTHTYLDPTGRV----RVMRARRPE 245
G+ + AQ+ I LE + P T P+ S ++G W + Y++AP S+G +GPF KG QE+ LA Y N L V P ++ WL ARL A + ++DT W VTF DV + G + + F R+W H+++ T RV R M R E
Sbjct: 13 GLTCTDAQRAAIEDAIARLEALNP--TAVPSDSLALEGAWEVTYSNAPPPSNGSLGPF---KGTAYQEINLADGTYVNRLTV--PPND-WLGARLRADWTRVDDTLWLVTFRDVTVSVLGFDLFTKAFDEETTRVWEHSFVSETHRVVRAARTMEGLRRE 164
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|303271735|ref|XP_003055229.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463203|gb|EEH60481.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 80.8777 bits (198), Expect = 4.361e-14 Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 0
Query: 108 ALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFD-VLNDTD---WEVTFEDV-VGLLRGK-QVVRQVFSGVQRIWTHTYLDPTGRVRVMRARR 243
ALE + P T PA S++V GRW ++++ AP S+G +GPF KG QE+ L + +Y N+L + P ++ WL ARL A+F V+ND+ W VTF+ V V L G + F R+W T++D RV+RA R
Sbjct: 110 ALEALNP--TSNPANSALVDGRWEVVFSTAPPPSNGSLGPF---KGTAFQEISLENGSYVNVLSI--PPND-WLGARLVATFAPVMNDSRGELWTVTFDAVAVTLFDGAFSPFAKTFKDTTRVWRTTFID--AETRVVRAAR 241
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|551656805|ref|XP_005831175.1| (hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712] >gi|428175304|gb|EKX44195.1| hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712]) HSP 1 Score: 75.0998 bits (183), Expect = 1.381e-12 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 0
Query: 108 ALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQR------------------------IWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
A E K PT+ A S M+ G+W L+++ G SSG +GPF G V Q++ L + Y NIL + ++EA L+A +DV+ W V F+D+ L G V ++ FS QR IW Y + T +RV+ A +R+ +A ++V RE
Sbjct: 32 ATELAKLNPTQRQATSPMLDGKWRLVFSTTKGPSSGMLGPF---VGDVFQDIVLEQEKYFNILELG------FVEAVLSAHWDVMGQEKWRVFFDDIQFSLFGIPVFKKEFSSSQRDQVLEGLDTLGGTEKEARSSNNGGIWDMAYCNDT--LRVLWAYGVQREASKASIYVLERE 196
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|873242549|emb|CEL91638.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 75.8702 bits (185), Expect = 1.924e-12 Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 90 SGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEA 251
+GI + A++ I S+ LE+ P+ +A A S + G W L+YT PG S+G++GPF G V+Q +++ S Y N + + ++A L AS+DVL W V F+++ + G + + V W TYLD R++ AR +QPD +
Sbjct: 85 NGIKVTPAEREKILSLVKQLESSSPI--KAAAQSKRLNGLWRLVYTTTPGSSAGKLGPF---VGDVTQMIDMDSDVYINYVDIGP------VQAFLEASWDVLGPNRWRVKFQNIGFRVFGIPLAKNELKNVGD-WRMTYLDDD--YRILWARGSRQQPDAS 232
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|224000177|ref|XP_002289761.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974969|gb|EED93298.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.485 bits (184), Expect = 2.799e-12 Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 0
Query: 95 SKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPG----HEPWLEARLTASF--------DVLND------------TDWEVTFEDVVGLLRGKQVVRQVF-SGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
S++Q+ + S+ LE++ P+ PA ++G W + YTDAP S+G++ + KG Q ++L + Y N L V G + WL A L A + D N+ T W+VTFE + L GK + Q F +G R W TYLD T R++RA + R+ D+ +LF R+
Sbjct: 65 SQSQRNEVHSLLSQLESLCPLS--EPARDPRMEGSWYVYYTDAPPPSNGQL----LWKGIAKQVIDLDGRRYRNELFVGGKGDNKDQDAWLMAMLDADWTEWDGVYLDSENNNTANASGEDFGATTWKVTFESITISLFGKPLFTQQFKAGTSRTWKMTYLDDT--TRIVRAGKTGREDDD-WLFYMTRD 245
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|585102707|gb|EWM22249.1| (harpin binding protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 74.3294 bits (181), Expect = 6.552e-12 Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 0
Query: 77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVV-RQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQP 248
+ L ++ K +G+ +++ K I S+A E +K PT+ A S V G W L+YT G S+G++GPF G+V Q+++ A Y N +R+ +E L A+++V +W+V F+D+ + G +V ++ SG W TY+D R+ A E +P
Sbjct: 78 KQDLYAVAKN-KDNGLKATESDKAKILSLAS--ELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPF---VGQVLQKIDTAGGDYVNFVRL----FGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKP 240
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|553183473|ref|XP_005853904.1| (hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526] >gi|422295159|gb|EKU22458.1| hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 73.9442 bits (180), Expect = 9.428e-12 Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 0
Query: 77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVLNDTDWEVTFEDVVGLLRGKQVV-RQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQP 248
+ L ++ K +G+ +++ K I S+A E +K PT+ A S V G W L+YT G S+G++GPF G+V Q+++ A Y N +R+ +E L A+++V +W+V F+D+ + G +V ++ SG W TY+D R+ A E +P
Sbjct: 67 KQDLYAVAKN-KDNGLKATESDKAKILSLAS--ELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPF---VGQVLQKIDTAGGDYVNFVRL----FGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKP 229
BLAST of EWM24627.1 vs. NCBI_GenBank
Match: gi|612385932|ref|XP_007508486.1| (predicted protein [Bathycoccus prasinos] >gi|412985078|emb|CCO20103.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 62.003 bits (149), Expect = 1.395e-7 Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 0
Query: 77 RDSLVSIGKQLSTSGILPSKAQKMTIRSIAVALETVKPMPTRAPALSSMVQGRWSLLYTDAPGISSGRIGPFGVIKGRVSQEVELASKAYTNILRVAKPGHEPWLEARLTASFDVL---NDTDWEVTFEDV-VGLLRGKQ--VVRQVFSGVQRIWTHTYLDPTGRVRVMRARRPERQPDEAFLFVFVRE 259
+D L + QL+ GI S+ +K + +E + + ++ G W ++Y+ AP S+G++ FG I G Q ++ K Y N+L + WL RL A++++L N+T W V+F + V L K+ V+ G R W T+ D R++RA R + + + +FV RE
Sbjct: 59 KDELEVLCVQLN-KGIDISEREKEEVDERVKNVEKYYQSSLMSSTMENVANGYWRVIYSTAPPPSNGQL--FGPICGTAFQSIDKEEKTYENVLALGN-----WLTLRLKATYEILENTNETRWTVSFRSIQVELFEKKEPVFVKAFPKGTTREWLTTFQD--DEWRIVRAGRTKEEISKN-VFVMRRE 236 The following BLAST results are available for this feature:
BLAST of EWM24627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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