rna6059, rna6059 (mRNA) Nannochloropsis gaditana

Overview
Namerna6059
Unique Namerna6059
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1911
Alignment locationCM002467.1:465421..466594 -

Link to JBrowse

Properties
Property NameValue
ProductPeptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript idgnl|cribi|Naga_100117g14.400.mrna
Orig protein idgnl|cribi|Naga_100117g14.400
GeneFKB7
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:465421..466594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FKB7gene5854Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6059rna6059-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24621.1cds6044Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6059 ID=rna6059|Name=rna6059|organism=Nannochloropsis gaditana|type=mRNA|length=1911bp
ATGGCTGCTGTGGAGGCCAGCGCACCACAACCCGCTTTGTTGACCTGGAA
GACAGCCATGTCAAGAGCCGTAGTCACGCCTGACTCGCCTCCAAATGAGC
ACCTCTCGGAGAGTTACACAACGGAGACTATTATCCTGGAGGGGATGCAT
CAGCATTTGCGCCGTTTGCATGAGGTTAAGAATTGCTGTAAAACCAATGA
ACACGCTATTTTGTCCGCAAAGGCTGGCCAACTCTCGCGTCAAGACACTT
ACAACAGGACGCAATCTGACAGGCGTTCACGTCGCTTTGAAAACCAAGAG
GACGCACACACTGTATACAAGCTGCGAAAATCTTTTCAAACACTCGTCAG
ACACGCGCTTCTACGAAGGCGGGAAGAAGAGTTTTTGACAGCTGAAGAAC
TGGCAACAGTTGGCCAGACACTTCAAAGTGTGTGTTCAGCACGTACTCAG
AAGACTGTTACAGGTTACGGCGGCTGTCTTCCTTATTTAACGAGTGGTCG
GTGTAACTACACTGATTTTAGTCACCTTCGTGACAATATTCCAGAGAGAG
CTCGATATTTGTTTGGTGTGCAGCACTTTTTACAGTGCACGCGTGATCAA
CATGGACGCATTAATACGGCAGAGTTTTTCCGTCATACCTACAATTTGAT
GTGCTTGCTGAAGACAAAAATTACGTTGCTCTTTTACAATGAGAGCGATC
GCGGAAGCCTGGGCGAATCTGATCTGGAGGGCTACGTGTACGACCTCGTC
TTATCACTTCCTGCGCTGCAGCACTTGCCTGATAACTTTGCTTCTTTCTA
TGTTTTCACTGCGGTGCGTCGCTTTATGTTCTTCTTGGACGTGAAAAGGA
CGGGGAGGGTGGACGTGCGCCACCTCATCTCGTCGCAGGTAATGGAGGAG
CTCATGGCCCTGGCGATGATGAACTCGCCTCCCCCGCCTCCTCCTCAATC
GCCTTTCCCAGCAGCGCATGGGGCAAGAGCAGCCAGCGAAGAGGCCTCTT
TTGCTTCTGAATGTTCGCGGTGGCAAGAACGAGCAAGCAAGAACTGGTTT
TCGACCGAGAACGCTCTGCGGGTGTACAACATGTACCTGGACCTGGACCG
GGACCAGAATGGCCTCTTGAACAAGATTGAACTCCTCCGCTATCCTGGCT
TCTCCCAAGCCACACGATTGACGTCCGCATTTGTGGACCGCGTCTTTGAG
GAAAGCATCACGTACAGGTTACCCTCGGAGACTGCGGAAGAGGACGAGTC
TCTGCCCGAGGCAGAGATGGATTACAAAGTATTCCTGGACTTTGTACTGT
CCATGGAAAACCGCTCCTCGCCGCCTGCCCTCAAGTGGTTGTTTCGCATT
CTGGACGTGCAGAAAACAGGGTTTTTGTCGCCCTTTGCCATCCGCTCCTT
CTTCCGGGAGGTTGCCAACGCCCTGGAGAGGGCAGGAATGGAGGCGCCGC
TCGTGGATGACGTGATCGACGAGGTCTTTGACATGGTTCGGCCACAGGAT
CCCTCTCGAGGCATCTCTCAGGAGGACCTGCTGACATGCGGTGTGGGCTC
CATCGTCGTCTCCATGCTAATTGACGTGCAGTCGTTCCTGAGCTATGATC
AGCGCGAGCACTCGGCGGCCGCAGCGGCGGCTGCTGCTGCCGCAGCACTA
GAAGAGGGAGCGGAGGAGGTCGGTCTGGATGCTGAAAGAGAGACTCTAGC
TGGAAGTGACAACGTTGACAGGGATGCGAACGGAATCTGTGATCAAATGT
TGGAAAGAAGGCTGCCTTACGTCGGCGAAGAGGAAGGAAAGGGGCATGTG
GCGGATGGCGACGTGGATGGAGAAGACAAAGAGTATGAGATCAGTCACGA
GGAAGAGTTGTCGAAGCCGGAGGACAAGGCGTCGATAATTGTAGTATACA
ATGCCGTGTGA
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protein sequence of rna6059

>rna6059-protein ID=rna6059-protein|Name=rna6059|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MQPLQAYCLLGALLTSFGASRAFLIIPRSRLSSSTFARRCNIAIRMSTKD
EVDTTSKSSTPLPSAPLGGMPPAPPASVGRRRPDPEKGASYFDFEDETAP
SVPQQLEGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLC
RGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVV
GPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELR
MRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETW
CWRTVWTWGRLSWIKSLLNYPCLHADVPYRQRVFPIVAGPLGARACIQKM
FPGSKVADNTLAGHPDLSLP
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mRNA from alignment at CM002467.1:465421..466594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6059 ID=rna6059|Name=rna6059|organism=Nannochloropsis gaditana|type=mRNA|length=1174bp|location=Sequence derived from alignment at CM002467.1:465421..466594- (Nannochloropsis gaditana)
ATGCAGCCTCTCCAGGCTTATTGCCTATTAGGCGCCCTGCTCACGAGCTT
TGGTGCGAGCCGTGCGTTTCTTATCATTCCGAGAAGCCGCCTCAGCTCTA
GCACTTTTGCCAGGCGCTGTAACATCGCGATTAGGATGAGCACCAAAGAT
GAAGTAGACACGACATCGAAATCAAGTACACCGCTACCGTCGGCTCCGCT
GGGAGGCATGCCACCCGCACCGCCCGCGAGTGTGGGGCGGCGAAGGCCGG
ATCCGGAAAAGGGTGCATCCTACTTTGATTTTGAGGATGAGACAGCGCCG
AGCGTGCCGCAGCAGTTGGAAGGCGATTTACTTCGTGACGGAGGGGTTAT
GAAAACCATTATCACGGCGGGGGAGGGGCCTTTGGTGACGCCGGGCGCGG
AAGTAGCTGTCAAGTACGAAGGTCGTACGGCGGACGGGCAGGTGCTGTGC
CGGGGGGAGGACTTCAGATTTTTGCAGGGGGATGGGACAATGATCGGCGG
GTTTGAGACAGCGGTCGGCTCCATGCGTGTAGGAGAGGTGGCCCGAGTCC
AAATTCAGCCATGGTACGCTTACGGGAGCGCTGGAGTGAGTCCCGTCGTC
GGCCCCGACATGCCCCTGGACTTTGATATTGAAGTCTTGGAGGCATCAGG
AAACTTCCTGAACCCGAAGTCCTTCCGGGACGTTGACCCGAAAAAACTCC
GTGACGCGAAATCCATTGCTCGTGACTACGCGCAGCGCTCGGAACTGCGG
ATGCGAAACGAAGAGGGCCTAAGCAATGCCGAGAAGGCCTCGCGCTGGTT
CAAGTCCCTCTATTTCTTCGGGTTTTTCGAGGGAGAGACGGGCGAGCGCC
CGCCCTGGTATTTGACCCCTACCATCACCTTTCCCATCATGTTCGTCACG
TGCGCGGCGGCATTTTATGTGCTCATCTCCTTCGGCGGCGTCTCCATCAA
GAGAGACCTGGTGCTGGAGGACAGTGTGGACCTGGGGGCGGCTTTCCTGG
ATCAAATCTTTGCTTAATTATCCCTGCCTGCACGCAGATGTTCCATACCG
CCAGAGGGTTTTCCCCATCGTTGCTGGGCCTCTCGGGGCGAGAGCGTGTA
TACAAAAGATGTTTCCGGGAAGTAAAGTCGCTGACAACACACTGGCTGGC
CATCCAGATCTATCTCTGCCATGA
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Coding sequence (CDS) from alignment at CM002467.1:465421..466594-

>rna6059 ID=rna6059|Name=rna6059|organism=Nannochloropsis gaditana|type=CDS|length=2226bp|location=Sequence derived from alignment at CM002467.1:465421..466594- (Nannochloropsis gaditana)
AGAGACCTGGTGCTGGAGGACAGTGTGGACCTGGGGGCGGCTTTCCTGGA
TCAAATCTTTGCTTAATTATCCCTGCCTGCACGCAGATGTTCCATACCGC
CAGAGGGTTTTCCCCATCGTTGCTGGGCCTCTCGGGGCGAGAGCGTGTAT
ACAAAAGATGTTTCCGGGAAGTAAAGTCGCTGACAACACACTGGCTGGCC
ATCCAGATCTATCTCTGCCATGAATGCAGCCTCTCCAGGCTTATTGCCTA
TTAGGCGCCCTGCTCACGAGCTTTGGTGCGAGCCGTGCGTTTCTTATCAT
TCCGAGAAGCCGCCTCAGCTCTAGCACTTTTGCCAGGCGCTGTAACATCG
CGATTAGGATGAGCACCAAAGATGAAGTAGACACGACATCGAAATCAAGT
ACACCGCTACCGTCGGCTCCGCTGGGAGGCATGCCACCCGCACCGCCCGC
GAGTGTGGGGCGGCGAAGGCCGGATCCGGAAAAGGGTGCATCCTACTTTG
ATTTTGAGGATGAGACAGCGCCGAGCGTGCCGCAGCAGTTGGAAGGCGAT
TTACTTCGTGACGGAGGGGTTATGAAAACCATTATCACGGCGGGGGAGGG
GCCTTTGGTGACGCCGGGCGCGGAAGTAGCTGTCAAGTACGAAGGTCGTA
CGGCGGACGGGCAGGTGCTGTGCCGGGGGGAGGACTTCAGATTTTTGCAG
GGGGATGGGACAATGATCGGCGGGTTTGAGACAGCGGTCGGCTCCATGCG
TGTAGGAGAGGTGGCCCGAGTCCAAATTCAGCCATGGTACGCTTACGGGA
GCGCTGGAGTGAGTCCCGTCGTCGGCCCCGACATGCCCCTGGACTTTGAT
ATTGAAGTCTTGGAGGCATCAGGAAACTTCCTGAACCCGAAGTCCTTCCG
GGACGTTGACCCGAAAAAACTCCGTGACGCGAAATCCATTGCTCGTGACT
ACGCGCAGCGCTCGGAACTGCGGATGCGAAACGAAGAGGGCCTAAGCAAT
GCCGAGAAGGCCTCGCGCTGGTTCAAGTCCCTCTATTTCTTCGGGTTTTT
CGAGGGAGAGACGGGCGAGCGCCCGCCCTGGTATTTGACCCCTACCATCA
CCTTTCCCATCATAGAGACCTGGTGCTGGAGGACAGTGTGGACCTGGGGG
CGGCTTTCCTGGATCAAATCTTTGCTTAATTATCCCTGCCTGCACGCAGA
TGTTCCATACCGCCAGAGGGTTTTCCCCATCGTTGCTGGGCCTCTCGGGG
CGAGAGCGTGTATACAAAAGATGTTTCCGGGAAGTAAAGTCGCTGACAAC
ACACTGGCTGGCCATCCAGATCTATCTCTGCCATGAATGCAGCCTCTCCA
GGCTTATTGCCTATTAGGCGCCCTGCTCACGAGCTTTGGTGCGAGCCGTG
CGTTTCTTATCATTCCGAGAAGCCGCCTCAGCTCTAGCACTTTTGCCAGG
CGCTGTAACATCGCGATTAGGATGAGCACCAAAGATGAAGTAGACACGAC
ATCGAAATCAAGTACACCGCTACCGTCGGCTCCGCTGGGAGGCATGCCAC
CCGCACCGCCCGCGAGTGTGGGGCGGCGAAGGCCGGATCCGGAAAAGGGT
GCATCCTACTTTGATTTTGAGGATGAGACAGCGCCGAGCGTGCCGCAGCA
GTTGGAAGGCGATTTACTTCGTGACGGAGGGGTTATGAAAACCATTATCA
CGGCGGGGGAGGGGCCTTTGGTGACGCCGGGCGCGGAAGTAGCTGTCAAG
TACGAAGGTCGTACGGCGGACGGGCAGGTGCTGTGCCGGGGGGAGGACTT
CAGATTTTTGCAGGGGGATGGGACAATGATCGGCGGGTTTGAGACAGCGG
TCGGCTCCATGCGTGTAGGAGAGGTGGCCCGAGTCCAAATTCAGCCATGG
TACGCTTACGGGAGCGCTGGAGTGAGTCCCGTCGTCGGCCCCGACATGCC
CCTGGACTTTGATATTGAAGTCTTGGAGGCATCAGGAAACTTCCTGAACC
CGAAGTCCTTCCGGGACGTTGACCCGAAAAAACTCCGTGACGCGAAATCC
ATTGCTCGTGACTACGCGCAGCGCTCGGAACTGCGGATGCGAAACGAAGA
GGGCCTAAGCAATGCCGAGAAGGCCTCGCGCTGGTTCAAGTCCCTCTATT
TCTTCGGGTTTTTCGAGGGAGAGACGGGCGAGCGCCCGCCCTGGTATTTG
ACCCCTACCATCACCTTTCCCATCAT
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Synonyms
Publications