EWM24621.1, cds6044 (CDS) Nannochloropsis gaditana

Overview
NameEWM24621.1
Unique Namecds6044
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:465705..466594 -
Alignment locationCM002467.1:465421..465643 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24621.1
ProductPeptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript idgnl|cribi|Naga_100117g14.400.mrna
GeneFKB7
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:465705..466594 -
CM002467.1supercontigCM002467.1:465421..465643 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|585106141|gb|EWM24621.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query:    1 MQPLQAYCLLGALLTSFGASRAFLIIPRSRLSSSTFARRCNIAIRMSTKDEVDTTSKSSTPLPSAPLGGMPPAPPASVGRRRPDPEKGASYFDFEDETAPSVPQQLEGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWCWRTVWTWGRLSWIKSLLNYPCLHADVPYRQRVFPIVAGPLGARACIQKMFPGSKVADNTLAGHPDLSLP 370
            MQPLQAYCLLGALLTSFGASRAFLIIPRSRLSSSTFARRCNIAIRMSTKDEVDTTSKSSTPLPSAPLGGMPPAPPASVGRRRPDPEKGASYFDFEDETAPSVPQQLEGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWCWRTVWTWGRLSWIKSLLNYPCLHADVPYRQRVFPIVAGPLGARACIQKMFPGSKVADNTLAGHPDLSLP
Sbjct:    1 MQPLQAYCLLGALLTSFGASRAFLIIPRSRLSSSTFARRCNIAIRMSTKDEVDTTSKSSTPLPSAPLGGMPPAPPASVGRRRPDPEKGASYFDFEDETAPSVPQQLEGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWCWRTVWTWGRLSWIKSLLNYPCLHADVPYRQRVFPIVAGPLGARACIQKMFPGSKVADNTLAGHPDLSLP 370          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|299117363|emb|CBN75319.1| (FKBP-type peptidyl-prolyl cis-trans isomerase 7 [Ectocarpus siliculosus])

HSP 1 Score: 132.88 bits (333), Expect = 1.618e-33
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 0
Query:  147 QVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDY---AQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWC 301
            +V  +G+++     DGTMI G++T +  +R G+ A ++    Y YG+ GV+P+V P+  L FD+E+LE  GN +NP +F D +P   R   +IA  +   ++R  L   + + L   +K   W K++Y FG FEGETGE  PWYL P ITFPI+ T C
Sbjct:    4 KVFSKGDEYLTTLEDGTMISGWDTGLAGLRKGDRALIKCTSRYGYGAEGVTPIVPPNANLVFDVELLENEGNIMNPATFVDANPLTPRTPDTIAEAFDSKSRRKALAAADVDELEGLDKVIAWAKNIYIFGLFEGETGEEAPWYLKPLITFPIMITIC 161          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|873239217|emb|CEL94530.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 130.568 bits (327), Expect = 2.632e-31
Identity = 74/197 (37.56%), Postives = 109/197 (55.33%), Query Frame = 0
Query:  107 EGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTAD-GQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWCW 302
            E D+ RDGGV+K ++  G G L   G  V ++Y G+ A+ G+V  RG+DFR +  DG+MI G++ A+ +M+ GEVA V I P YAYG  GV PV+ P+ PL F+IE+ E  G   + K   ++D         I  D  ++ + + + E  L++ EK   W  SL FFG          PWY+ P + +P   TW +
Sbjct:   91 EEDVSRDGGVVKRVVREGYGKLAQGGGFVKLRYTGKLAETGRVFARGDDFRCMVADGSMIKGWDLALRTMKEGEVAEVVIAPKYAYGVKGVPPVIPPNAPLLFEIELTEYEGTPYDLKLGLNID--------KIETDTEKKRKDKEKAEAALTDMEKFKNWLNSLQFFGVVTAGYRRGVPWYVNPLVLYP---TWFF 276          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|546312697|ref|XP_005715051.1| (unnamed protein product [Chondrus crispus] >gi|507111513|emb|CDF35232.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 124.79 bits (312), Expect = 1.163e-28
Identity = 73/198 (36.87%), Postives = 106/198 (53.54%), Query Frame = 0
Query:  109 DLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVL----CRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLE-ASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWC 301
            D+  DGGV K ++  GEG +V  GA+V+V+Y G   DG        +  +F F  G G +I G+E  V +MR GEVA  +I P YAYG  G+ PV+  +  L F+IE+++   G   + K+  D +P+  R  + IA+DY  R E +    +G+S            Y    F  +TGERPPW++ P ITF  I  +C
Sbjct:  184 DVTGDGGVEKKLVVPGEGDVVYQGAQVSVQYTGTLEDGTTFDSTRSKSGNFSFELGAGQVIKGWEAGVSTMRKGEVAAFEISPQYAYGRRGMPPVIPGNSTLTFEIELVDFKGGEKEDIKTVADYNPEVARTPEDIAKDYDARLETQEERRKGMS-------LLDRFYIISPFASQTGERPPWWINPNITFVGILAFC 374          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|551583209|ref|XP_005777041.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Emiliania huxleyi CCMP1516] >gi|485629232|gb|EOD24612.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 117.472 bits (293), Expect = 1.580e-27
Identity = 73/186 (39.25%), Postives = 95/186 (51.08%), Query Frame = 0
Query:  117 MKTIITAGEGPLVTPGAEVAVKYEGRTAD-----GQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPII 297
            M   +  G G     GA V V YEGR A           RG+ F+F  GDG +IGG+E  V +M  GE A +   P YAYG+ G+ P++ PD  L FD+E+L       +  +F   +    R    I R Y +R   +   +EGL+    A  W K +Y FGFF G+  ERPPWYL P ITFP I
Sbjct:    1 MLETVQPGLGAAPLKGATVEVHYEGRLAATGAPFDSSRSRGKPFKFTLGDGRVIGGWEVGVAAMAPGERATLTCSPQYAYGAKGIPPLIPPDSTLLFDVELLSVEQPAASGGTFAADNAGVPRTPADIQRAYEERMAAKPAAKEGLA---AAVEWLKGVYIFGFFSGKE-ERPPWYLNPLITFPGI 182          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|922858622|gb|KOO26736.1| (peptidyl-prolyl cis-trans isomerase fkbp1a-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 110.538 bits (275), Expect = 4.966e-25
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 0
Query:  135 VAVKYEGRTAD-GQVL----CRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPII 297
            V V Y GR  + G V      RG+ F+F  G+G +IGG+E  V SM+VGE++ +   P YAYG+ G+ P++ P   L F++E+L    +    +SF D      R   +I+  Y  +   +    EGL   E    W KS+Y FG F   T ERPPWYL P ITFP I
Sbjct:    2 VEVHYVGRLVETGAVFDSSRARGKTFKFSLGEGKVIGGWEVGVSSMQVGELSEITCSPQYAYGAKGIPPMIPPSATLRFEVELLAIEQSDEEGRSFADDYVDTARTPGAISAAYKSKMATKPTKAEGL---EGLLDWAKSIYIFGLFS-PTAERPPWYLNPLITFPSI 165          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|1210524527|dbj|GAX16785.1| (hypothetical protein FisN_21Hh233 [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 2.408e-24
Identity = 75/195 (38.46%), Postives = 105/195 (53.85%), Query Frame = 0
Query:  110 LLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQI-QPWYAYGSAGVSPVVGPDMPLDFDIEVLEA---SGNF-LNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRN--EEGLSN-AEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPI 296
            L  D  ++K +IT G G  +  G    V+Y    A+ +V+ R    + + GD  MI  ++ A+ SM +GE A +Q+  P   YG+AGV+ VV P+  L+ D+ V  A   + N   +  +  D  P   R A  I   +A R  LR  +  +EG     EKA    K+ YFFG FEGETGERPPW+L P+ITFPI
Sbjct:   43 LTEDSKLLKKVITPGTGEKLNLGDIATVQYTCY-ANSKVIARSPKQKMVVGDTAMIPAWDKALRSMSIGERAVIQVTDPALGYGAAGVTDVVPPNAVLELDLYVTSAQPATANIDFDSLAMADNTP---RTASEIQAAFAARQALRANDVPKEGFEGFLEKA----KNFYFFGLFEGETGERPPWFLRPSITFPI 229          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|1210530986|dbj|GAX10526.1| (hypothetical protein FisN_21Lh233 [Fistulifera solaris])

HSP 1 Score: 110.153 bits (274), Expect = 3.768e-24
Identity = 75/195 (38.46%), Postives = 105/195 (53.85%), Query Frame = 0
Query:  110 LLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQI-QPWYAYGSAGVSPVVGPDMPLDFDIEVLEA---SGNF-LNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRN--EEGLSN-AEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPI 296
            L  D  ++K +I  G G  +  G    V+Y    A+ +V+ R    + + GD  MI  ++ A+ SM +GE A +Q+  P   YG+AGV+ VV P+  L+ D+ VL A   + N   +  +  D  P   R A  I   +A R  LR  +  +EG     EKA    K+ YFFG FEGETGERPPW+L P+ITFPI
Sbjct:   43 LTEDSKLLKKVIAPGTGEKLNLGDIATVQYTCY-ANSKVIARSPKQKMVVGDTAMIPAWDKALRSMSIGERAVIQVTDPALGYGAAGVTDVVPPNALLELDLCVLSAQPATANIDFDSLAMADNTP---RTASEIQAAFAARQALRANDVPKEGFEGFLEKA----KNFYFFGLFEGETGERPPWFLRPSITFPI 229          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|397647634|gb|EJK77789.1| (hypothetical protein THAOC_00357 [Thalassiosira oceanica])

HSP 1 Score: 108.227 bits (269), Expect = 3.046e-23
Identity = 75/204 (36.76%), Postives = 103/204 (50.49%), Query Frame = 0
Query:  115 GVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQV-LCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQ-PWYAYGSAGVSPVVGPDMPLDFDIEVLE----------ASGNFLNPKSF-RDVDPKKLRDAKSIARDYAQRSELRMRN----EEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWC 301
            G+ KTI+T G G  V  G  + +KY    A       R E  R + GDGT + GF+ A+ SMR GE A V I  P Y YG AGV P V P+  ++ D+E+L+           +G+    +    D    + R   +IA  Y QR + +  +    +EGL   E      ++ YFFG FEGETG+  PWYL P++TFPI    C
Sbjct:   62 GITKTIVTEGTGRSVRVGDVLILKYFCNAAGSDTAFARSERQRVMVGDGTFVPGFDAALRSMREGERAAVTISDPRYGYGEAGVPPFVLPNSQIEMDLEILDVEDAVGLSAAGTGDLAGLEGMGMDGPVSRPRTPAAIAAAYEQRMKQKAIDAPPEKEGL---EWVVDKIRTSYFFGLFEGETGQEAPWYLKPSVTFPIAFLIC 262          
BLAST of EWM24621.1 vs. NCBI_GenBank
Match: gi|544211355|ref|XP_005536077.1| (similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D] >gi|449016389|dbj|BAM79791.1| similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 107.842 bits (268), Expect = 1.781e-22
Identity = 77/210 (36.67%), Postives = 112/210 (53.33%), Query Frame = 0
Query:  109 DLLRDGGVMKTIITAG--------EGPL-VTPGAEVAVKYEGRTAD-GQVLC----RGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLE----ASGN--FLNPKSFRDVDPKKL-RDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPII 297
            DL  DGGV++ +++ G        + P+  T G+ + V Y G+ A+ GQ+      R E F F+ G+G++I G+E  +  +  G+V R+   P YAYG  GV PV+ P   L+F++EVLE    A GN    +  S R +D   + R  + I+R Y +R E R       +N +K S+WF        F   TGERPPW+L P ITF II
Sbjct:  189 DLTGDGGVLRELLSRGAPEKAANKQTPVQSTSGSRLRVHYVGKLAETGQIFDASRERQEPFEFILGEGSVIKGWEAGLVGLAAGDVVRLVCAPAYAYGLRGVPPVIPPRAKLEFEVEVLEVLPAAPGNSEAQSKSSLRALDEDDVPRTPEDISRAYIKRLEERA------ANPKKESKWF----IISPFASATGERPPWWLNPNITFLII 388          
The following BLAST results are available for this feature:
BLAST of EWM24621.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106141|gb|EWM24621.1|0.000e+0100.00Peptidyl-prolyl cis-trans isomerase, FKBP-type [Na... [more]
gi|299117363|emb|CBN75319.1|1.618e-3340.51FKBP-type peptidyl-prolyl cis-trans isomerase 7 [E... [more]
gi|873239217|emb|CEL94530.1|2.632e-3137.56unnamed protein product [Vitrella brassicaformis C... [more]
gi|546312697|ref|XP_005715051.1|1.163e-2836.87unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|551583209|ref|XP_005777041.1|1.580e-2739.25FKBP-type peptidyl-prolyl cis-trans isomerase [Emi... [more]
gi|922858622|gb|KOO26736.1|4.966e-2539.29peptidyl-prolyl cis-trans isomerase fkbp1a-like pr... [more]
gi|1210524527|dbj|GAX16785.1|2.408e-2438.46hypothetical protein FisN_21Hh233 [Fistulifera sol... [more]
gi|1210530986|dbj|GAX10526.1|3.768e-2438.46hypothetical protein FisN_21Lh233 [Fistulifera sol... [more]
gi|397647634|gb|EJK77789.1|3.046e-2336.76hypothetical protein THAOC_00357 [Thalassiosira oc... [more]
gi|544211355|ref|XP_005536077.1|1.781e-2236.67similar to FKBP-type peptidyl-prolyl cis-trans iso... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6059rna6059Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications