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Properties
| Property Name | Value |
|---|
| Product | cockayne syndrome 1 |
| Orig transcript id | gnl|cribi|Naga_100117g16.409.mrna |
| Orig protein id | gnl|cribi|Naga_100117g16.409 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:460742..462403 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6057 ID=rna6057|Name=rna6057|organism=Nannochloropsis gaditana|type=mRNA|length=3122bp
AACTTCGCGGAGACAGCGAATCAGAACACAGCATATAAGCTTTGAAAAAT
TCCATGGCGAAATGGACGTCATCAACAAAATATTTCTCTGCAGTTGACCC
GGTCTCAAGTCAAGAAACCCCTTTTTTTTCCCCACAACACCTACAGGAGT
GCAGCTGACCATGCCATTATTGCCATTTCCCTCAATAATTGTGGGAATGC
CAACATCTCTGCTTATGCTCTTAATGCTATCGCCGGTGCCAACGGAAGGT
TTTTTGACGCGGGCTCCCATGACCTTGCGCAAGATCCAACACACAGCTCC
CTCCTCTGCACCTTCATGTGGGCCGGCTGGGGACTGTATCCGCAGGCAGC
ATGTCATTGCCCGCCTGAGTGCGCGTCCAGAGGATGAAGGAATCAATAAT
GAGGGATCAAACAGCGGACTGGGAGCAGGGGAACACGACAAAGAACCGCC
CAACCTTGAGCACGGCGTATCACCCATGCCGACGGGGGGAGAGTCTGAAT
ACGAGTATCAGTCCGAGTACACCGATCAGCAGGCGGAGATAGAATACCTC
GGCGACGATGAGCTTCTTGCGCGATATCGAGCAGACATGCAGAATTCTAA
TGACCAGTGGCAGCTCAATCTCTTTCTGAAGGCGCAGACAGGGATTTGGT
CGGGCGTCTGGAGCGAGTATACCCCCGAACCCAACAGCGGTCCTAACGGC
GAGACTGTCCTCCGTATGACCAACATATACAAGGGGCGACACGAGTGTGA
AGGTGACTACGATGCCCGGTCGGTCTGGTGGCGAGAAGTGACGCTCTTGC
ACGCGGCAGACGGGGGCCCTCTTGAGCCTGTAGTGGTAGGGGAGCGGCGC
ATGGAACCAACGAGCTTCCGGGGGGAGCTGGGCGCCATGGCTGCAGACAA
TGTCTTCTCATGCTCTCATGTGCGCTTTAAGGGCGCAACAGAGGTATTTG
AAGCAGAAATATGGATTCGACAAGGGGACTATCGCACCCGAGTGACGTTC
GTTTACAAGAGCCCCGATCCTGCATATGCCTTCCAGGCAAGCAAAGTGCT
TGTCAAGAAGGAGCGCTTGGGGAAAGAAGGTCCCACAGCAGAAGAGCCAG
AGCTCTTTGGGTCGAGCGGACGAGGCATATATGACCCCAACGCTAGAGTT
CCGGGGTCGTGGGTTTTGTCGCTGCACGGTGGCCTCTCCTTGGCATTCCC
CCCGACCTTGCCTCGCGGACAGAGAGGGGCGGTCATCGTGGACTGGACGG
CGGGAACTATGCGCTTTCAAGCGGATAGGATATTTGACCGACCTGACGGC
ACTCTAGGCTCCCTGGAAGTCACTCAGATCGGGACCCAGGATTCCTTGAC
GTTCACCATCCCCGACGACGCGGACGCGGGCGTGGCTAAGGCAGCAGCAA
GCGCCGACACGAATGGGGGGGAGAAGTAGTGGACTACAAGGCATTCTCTA
AAAGATGATTGTGGAAGGGTCCAATTTTATTTGTACTATATGTCAGGAGA
GTACTACTGGTTAAATTTCGTAGGTAAACTAGAGTTTTGAGCCATCGCTG
TTTGTTTGTCTTTGACCCTATTCCTTGCTTTTGGCTTCGTCAGCGAATGC
GGCAAAACATTAGTTCTACAATTATCATTCGGGAGCGTGCGTGTGCCTGG
TACCCTGAGACCAGCCGTCAAGCGCTTGCTGGCTTGACTGGGACGGCTCG
GGCTCGTCGGGCGCTGCCTCGTGGACGCGGACGAGTACCTCAACGAGCCT
CCCGTCCAGGGGGTCCCGGACGAGATCGTAGTCGTCACAGCTCACCTCTC
CCGCTACGTCCCCAACACTGTATTCGTCTACGTCTTCACTATCATCCAGC
GACGCATCCTCGTCCTCCTCATGCACTTCCGCCTCCACCTGAATGACGCG
CGGCGGACTCCCACTCATTGTTGACGGAAAGGAAGGAAGCTGGCGATGGG
CCCCGGCTTGATCGACCCCTCCGCTTCCGGACGGTGGGATTCGAGGCAAT
TGGTACGAAGCTTTAATATCCGAAGTGCCTGCTGTCGGACAAGGAGAGGG
GCTCTGTCCGGAAATACACTCCAAGCTGGTACTGCGATTAGCAGGGCGAT
GAACCACGCCGCAAGACTCTTGCGAGTCGCCAAATGATTGGAGTGACAAA
ATTTTGGCTGAGGAAGAAGTGCTTATGGAACTCTGCGCTTTGAACGAAGC
GGATATCTCGCGTGAAATGGGTCGATCTCCGAGGCGACTGCTGCTAGTTC
TCTCCAAGGCCAAGAGGCTGATAGTGCGAGAATACTCGACAGACGCACTG
GTGCCCTTCGTTCCTGAGCTGGCTAGATGGGAAGTAGGCTCTCGCATTTC
GGCGGGTGATGTTGGTGTCTCGTTTGGAGACGGTTCGTGTGCCGGGGCCA
TGTCGACTTTGAGGTCTGTGGTAGATTTGAATACCTTCCAGAGCGAAAGA
CCCTTGCGCCTACTGATCCAGAGTAAATGGCTTAGGCCCAACACAGTCAT
TATGGTCACATTGAAAAGTAGTGCAGTTTCCTCGAAGCGGAGGTAGGCAA
GTCGACCCATGACACCACCAACCAGAAAGCCTAAAATGGCTGTGGAGTGC
AACTTAACCTTCCAGAGGTCACCCCTCCGGCCCTTCAAGAGGTGGCCGAT
CGCAATTCCCAAATCTGTAGTCGCACCCGTGACGTGAGTGGTACGCAGCG
TATTACCCGAGTACTTGCTAGTCAGGGAGTTCTGGAGACCCATGGCAACA
GCGCAGACGTAGATGTAGTAGTGTTGCACGTGTCCCTCGTCCACGTGAAC
TTTGTTGACGACAAGAGCCGAGCCTTGCAGAAGGGCGATTGTGAGAAGCG
CTCGCCCATAGGATCGTCCTTAATAAAAGGGATGTGATGGTTGGCGAGAT
ACAGGTATCAGACAAAGAAGACGCACCACATGCAGATACAAGATGAGAGG
TGGCCTTTCCAAAATCGTACCCGCTTTTTTCCCATTTCTCTACGGACGTG
TGCACATTTTTTAAAATTTTTGACGTCACAACAACATACCTAGATAGAAT
GTCTCATGAGAGACGGTATATCCTCCAACGACAGACCCCACCAAGAAGCA
AAGAAAAACAGAAATTGGGAGA back to topprotein sequence of rna6057 >rna6057-protein ID=rna6057-protein|Name=rna6057|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQ
IDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSL
HVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQ
WYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSR
SLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGS
RDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWV
VSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIK
AIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSS
GRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCS
RHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGF
VPPILRQYDRDNSHRSTSRRREH back to topmRNA from alignment at CM002467.1:460742..462403+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6057 ID=rna6057|Name=rna6057|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp|location=Sequence derived from alignment at CM002467.1:460742..462403+ (Nannochloropsis gaditana)
ATGGTGTGCCAGAGCTTGATCACCCGCAGAGCCGAGGGGCATTTACGACC
CTCAGCGCTCGAGACGTCTGTCCACACTCGTCGACTAATGCATGCAGCGC
TCAGCACCCGAATAGAAGTAAAAAGTTCTCAGCAAGGACCCATAAATCAG
ATAGATTTGGATCCATGCGATGAGCGTTACCTGCTGGTGGCATCAGGAGA
TGCAACGGTCGGGCTGTACGACATGGAAGTGGAGCCAGCGCAAGATGGCA
GTGAGTCCGATGGCCAAGATGGCTCGATGCCTTCACGGGTGCAGAGCTTG
CACGTAACACCACGAACAAGGGCCCATGTGACAGAGAATATCGGGGATTT
GACCCGTGGCAGGGTGTCTAGCTCAATAGGAAATGCAGCACTCGCTGCCC
GGATGCAACCTCCATCGGGAGGGCACCGTTACAGCGTGACGAGCGTGCAA
TGGTATCCCCCCGACACAGGGATCTTTGTGTCGGGCAGCACGGACGGGTC
GGTACAAGTCTGGGACACCAACTTATTCGTCAGTGCGGGCACATTCTCGC
TGGGGAGCAAAGTGCACGCCGTGGCAATGTCCCGGGCCATGCTCTCACGA
TCTTTGATTGCCGTCGGCACCGACGACCGCCGCGTCCGCCTGTGTGACCT
CAAGTCCGGCGGTAGCAGCCACCTGCTTGCGGGCCATGCCCAGACAGTCA
CGACGGTTGCGTGGTCGCCTACTGAGGAACATCTTCTGGCAACGGTAGGT
CTGAAATGTCGTCGCTTTTACAGAGTGCCTGGTCCTGTCTAACCCTCCCT
GACCTAACCCTGACCCTGATTTTCGTATTTAAAGGGTTCGAGAGATTCCA
CAGTAAGGCTGTGGGACGTGCGTCGGTCAggggcctccgcctgcctGAAG
ACTCTCGACCAGGACGCCGACCATCGCGGCCGTGCCACTGGCATTCTGAG
TGCGCCGACAGCCCTGGCAAAGGCGCACGCCGGATGGGTAGTCTCGCTCG
ACTTTACACCCAACGGCTGCTGGCTAGTGAGTGCTGGGACTGACAAGCGT
CTCCGGCTTTGGAATGCTATGTCTGGACAGAACACGTTGTTAAACTATGC
GGGGACGCACAACGATATCGCAGTGGGATGGAAGATAAAAGCAATTCAGA
CGGCCGGCAGGAGAGGCATCGGTCGTGATTGGGGCGAGGGAAACATGATT
CTTTACCCCAACGGGCGGTCAGGCGAAgtcctgctcttccccctcctatC
GCGTGGAGGAATGTCCGGTAGAAGCCGGAGCCAGTCGAGCGGGCGACTCG
AGAggccgagggcggtgggCCAGCCCTCCCATCGGCTGCGCGGGCATCTT
GACGTTGTGCAGTCGATGGCCTACAGGCGGGACGCGGGCCAGATCATCAC
GGGGGGCGCCGAtagcctcctcctggtcttTGACTGCTCACGACACGACA
AAGAGGAAAGCCGGTTGTTGGATGGTGAGAACGATGGCCAGTACCCGAAG
GGCTCGAAACGGCGAGCAGCAGAGGCTGCAGACCAATGGAGCAGCGATGA
AGATGACAACAGTGGGCGCGTCGACCACGAGGAGGGATTTGTGCCCCCCA
TATTGCGGCAATATGACCGCGATAATAGCCACAGGAGCACGTCCCGTAGA
AGGGAACATTAA back to topCoding sequence (CDS) from alignment at CM002467.1:460742..462403+ >rna6057 ID=rna6057|Name=rna6057|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at CM002467.1:460742..462403+ (Nannochloropsis gaditana)
ATGGTGTGCCAGAGCTTGATCACCCGCAGAGCCGAGGGGCATTTACGACC
CTCAGCGCTCGAGACGTCTGTCCACACTCGTCGACTAATGCATGCAGCGC
TCAGCACCCGAATAGAAGTAAAAAGTTCTCAGCAAGGACCCATAAATCAG
ATAGATTTGGATCCATGCGATGAGCGTTACCTGCTGGTGGCATCAGGAGA
TGCAACGGTCGGGCTGTACGACATGGAAGTGGAGCCAGCGCAAGATGGCA
GTGAGTCCGATGGCCAAGATGGCTCGATGCCTTCACGGGTGCAGAGCTTG
CACGTAACACCACGAACAAGGGCCCATGTGACAGAGAATATCGGGGATTT
GACCCGTGGCAGGGTGTCTAGCTCAATAGGAAATGCAGCACTCGCTGCCC
GGATGCAACCTCCATCGGGAGGGCACCGTTACAGCGTGACGAGCGTGCAA
TGGTATCCCCCCGACACAGGGATCTTTGTGTCGGGCAGCACGGACGGGTC
GGTACAAGTCTGGGACACCAACTTATTCGTCAGTGCGGGCACATTCTCGC
TGGGGAGCAAAGTGCACGCCGTGGCAATGTCCCGGGCCATGCTCTCACGA
TCTTTGATTGCCGTCGGCACCGACGACCGCCGCGTCCGCCTGTGTGACCT
CAAGTCCGGCGGTAGCAGCCACCTGCTTGCGGGCCATGCCCAGACAGTCA
CGACGGTTGCGTGGTCGCCTACTGAGGAACATCTTCTGGCAACGGGTTCG
AGAGATTCCACAGTAAGGCTGTGGGACGTGCGTCGGTCAggggcctccgc
ctgcctGAAGACTCTCGACCAGGACGCCGACCATCGCGGCCGTGCCACTG
GCATTCTGAGTGCGCCGACAGCCCTGGCAAAGGCGCACGCCGGATGGGTA
GTCTCGCTCGACTTTACACCCAACGGCTGCTGGCTAGTGAGTGCTGGGAC
TGACAAGCGTCTCCGGCTTTGGAATGCTATGTCTGGACAGAACACGTTGT
TAAACTATGCGGGGACGCACAACGATATCGCAGTGGGATGGAAGATAAAA
GCAATTCAGACGGCCGGCAGGAGAGGCATCGGTCGTGATTGGGGCGAGGG
AAACATGATTCTTTACCCCAACGGGCGGTCAGGCGAAgtcctgctcttcc
ccctcctatCGCGTGGAGGAATGTCCGGTAGAAGCCGGAGCCAGTCGAGC
GGGCGACTCGAGAggccgagggcggtgggCCAGCCCTCCCATCGGCTGCG
CGGGCATCTTGACGTTGTGCAGTCGATGGCCTACAGGCGGGACGCGGGCC
AGATCATCACGGGGGGCGCCGAtagcctcctcctggtcttTGACTGCTCA
CGACACGACAAAGAGGAAAGCCGGTTGTTGGATGGTGAGAACGATGGCCA
GTACCCGAAGGGCTCGAAACGGCGAGCAGCAGAGGCTGCAGACCAATGGA
GCAGCGATGAAGATGACAACAGTGGGCGCGTCGACCACGAGGAGGGATTT
GTGCCCCCCATATTGCGGCAATATGACCGCGATAATAGCCACAGGAGCAC
GTCCCGTAGAAGGGAACATTAAATGGTGTGCCAGAGCTTGATCACCCGCA
GAGCCGAGGGGCATTTACGACCCTCAGCGCTCGAGACGTCTGTCCACACT
CGTCGACTAATGCATGCAGCGCTCAGCACCCGAATAGAAGTAAAAAGTTC
TCAGCAAGGACCCATAAATCAGATAGATTTGGATCCATGCGATGAGCGTT
ACCTGCTGGTGGCATCAGGAGATGCAACGGTCGGGCTGTACGACATGGAA
GTGGAGCCAGCGCAAGATGGCAGTGAGTCCGATGGCCAAGATGGCTCGAT
GCCTTCACGGGTGCAGAGCTTGCACGTAACACCACGAACAAGGGCCCATG
TGACAGAGAATATCGGGGATTTGACCCGTGGCAGGGTGTCTAGCTCAATA
GGAAATGCAGCACTCGCTGCCCGGATGCAACCTCCATCGGGAGGGCACCG
TTACAGCGTGACGAGCGTGCAATGGTATCCCCCCGACACAGGGATCTTTG
TGTCGGGCAGCACGGACGGGTCGGTACAAGTCTGGGACACCAACTTATTC
GTCAGTGCGGGCACATTCTCGCTGGGGAGCAAAGTGCACGCCGTGGCAAT
GTCCCGGGCCATGCTCTCACGATCTTTGATTGCCGTCGGCACCGACGACC
GCCGCGTCCGCCTGTGTGACCTCAAGTCCGGCGGTAGCAGCCACCTGCTT
GCGGGCCATGCCCAGACAGTCACGACGGTTGCGTGGTCGCCTACTGAGGA
ACATCTTCTGGCAACGGGTTCGAGAGATTCCACAGTAAGGCTGTGGGACG
TGCGTCGGTCAggggcctccgcctgcctGAAGACTCTCGACCAGGACGCC
GACCATCGCGGCCGTGCCACTGGCATTCTGAGTGCGCCGACAGCCCTGGC
AAAGGCGCACGCCGGATGGGTAGTCTCGCTCGACTTTACACCCAACGGCT
GCTGGCTAGTGAGTGCTGGGACTGACAAGCGTCTCCGGCTTTGGAATGCT
ATGTCTGGACAGAACACGTTGTTAAACTATGCGGGGACGCACAACGATAT
CGCAGTGGGATGGAAGATAAAAGCAATTCAGACGGCCGGCAGGAGAGGCA
TCGGTCGTGATTGGGGCGAGGGAAACATGATTCTTTACCCCAACGGGCGG
TCAGGCGAAgtcctgctcttccccctcctatCGCGTGGAGGAATGTCCGG
TAGAAGCCGGAGCCAGTCGAGCGGGCGACTCGAGAggccgagggcggtgg
gCCAGCCCTCCCATCGGCTGCGCGGGCATCTTGACGTTGTGCAGTCGATG
GCCTACAGGCGGGACGCGGGCCAGATCATCACGGGGGGCGCCGAtagcct
cctcctggtcttTGACTGCTCACGACACGACAAAGAGGAAAGCCGGTTGT
TGGATGGTGAGAACGATGGCCAGTACCCGAAGGGCTCGAAACGGCGAGCA
GCAGAGGCTGCAGACCAATGGAGCAGCGATGAAGATGACAACAGTGGGCG
CGTCGACCACGAGGAGGGATTTGTGCCCCCCATATTGCGGCAATATGACC
GCGATAATAGCCACAGGAGCACGTCCCGTAGAAGGGAACATTAA back to top
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