EWM24630.1, cds6042 (CDS) Nannochloropsis gaditana

Overview
NameEWM24630.1
Unique Namecds6042
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:460742..461485 +
Alignment locationCM002467.1:461576..462403 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24630.1
Productcockayne syndrome 1
Orig transcript idgnl|cribi|Naga_100117g16.409.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:460742..461485 +
CM002467.1supercontigCM002467.1:461576..462403 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|585106150|gb|EWM24630.1| (cockayne syndrome 1 [Nannochloropsis gaditana])

HSP 1 Score: 1063.91 bits (2750), Expect = 0.000e+0
Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query:    1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH 523
            MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH
Sbjct:    1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH 523          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|298709159|emb|CBJ31103.1| (WD-repeat protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 273.092 bits (697), Expect = 3.590e-81
Identity = 197/552 (35.69%), Postives = 262/552 (47.46%), Query Frame = 0
Query:    1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDG-SMPSR---VQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQ--------------------------DAD----------------HRGRATGILSAPTA-----LAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFD------CSRHDKEESRLLDGENDGQYPKGSKRRAAEAA---DQWSSDEDDNSG 492
            M     + RR  G LR  +    + T R+    L   +E+KS   GP+  +D+D  +ERYLL    D TV ++D++    +  S + G D  S P R           R R  V   +G   R  +S S G     +        HR+SV+ VQWYP DTG+FVSG+ DG V+VWDTN       F    KV++ +MS       LIAVG+D  + RLCD++SG  +H L+GH++ V+  AWSP  E LLATGS D TVRLWD+RRSGASACL +LDQ                           AD                 RG    I  AP A      A+AHAG V SL F P G  L++AGTD RLRLW   +G+NT+ NY  T N     + +   + AGRR           + +PN +SG+VL+FPL +                      G+P  +LRGH D VQ  AYR    +++T GAD L+L++        SR       L  G        G+KRR  E+    D WSSD++   G
Sbjct:    1 MALFRALERRRAGVLRQRSTADKLRTSRVSQLDLDINVEIKSPHHGPVTWLDVDSAEERYLLTGGADCTVAVFDLDGAGEKRPSLASGDDNNSGPRRHGPAAETVAARRRRPKVLREVGRTPRVPLSQSSGGGGGGSYGG-----HRHSVSVVQWYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTVRLWDIRRSGASACLISLDQHQEDDEEEQDEEEDDHTVRCGSGVGGSADGSDDGRGSGVRGSGKRKRGYLKHIKLAPHASRASKFARAHAGPVNSLCFAPEGLHLLTAGTDNRLRLWEVETGRNTMTNYLQTKNKRRRPFGMAVGRPAGRR--------SETVFFPNDKSGDVLVFPLHT--------------------PDGRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWSAAGPPWASRASYLPPPLAAGAG------GTKRRLGESTEDQDMWSSDDEGGDG 513          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|260832311|ref|XP_002611101.1| (hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae] >gi|229296471|gb|EEN67111.1| hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae])

HSP 1 Score: 228.409 bits (581), Expect = 3.946e-66
Identity = 165/487 (33.88%), Postives = 227/487 (46.61%), Query Frame = 0
Query:    5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF--DCSR-HDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDED 488
            + ++ R  G L P AL  +  TRR     LS   +VK      +N +DLDP + RYLL    D  + +YD           +    G+  S  +++    R+  HV                               H+YSV +V+WYP DTG+F S S D +++VWDTN  + A  F     V++ AMS       LIAV T    V LCDLKSG S+H+L GH   V    WSP   +LLATGS+D+ V LWDVR + +S  L +LDQ   H G    + ++  A+  AH G V  L FTP G  L+S GTD RLRLW+  +G+NTL+NY    ND       K++Q    RG   D     ++  P+  S  + +F +   GG S                     HRL GH + VQ   +  D  ++ +GG+DS +LV+  D  R  D EES+        + P    +      D WSSDED
Sbjct:    3 NFLSCRENGTLDPLALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPAESRYLLSGGADGVIAVYD-----------THNLSGTPSSTAEAVCTVGRSHRHV-------------------------------HKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNALLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLATGSQDNKVLLWDVRSAKSS--LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKICND-----SKKSVQFTVSRGSSPD-----VVFVPDDSS--IAMFDVF--GGTS--------------------LHRLVGHYNYVQCCVFNPDTQELYSGGSDSNILVWVPDLGRGEDYEESK--------KQPSQRSQNLQAYQDTWSSDED 397          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1126196613|ref|XP_019631468.1| (PREDICTED: DNA excision repair protein ERCC-8-like [Branchiostoma belcheri])

HSP 1 Score: 228.024 bits (580), Expect = 6.826e-66
Identity = 163/487 (33.47%), Postives = 228/487 (46.82%), Query Frame = 0
Query:    5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF--DCSR-HDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDED 488
            + ++ R  G L P AL  +  TRR     LS   +VK      +N +DLDP + RYLL    D  + +YD           +    G+  S  +++    R+  HV                               H+YSV +V+WYP DTG+F S S D +++VWDTN+ + A  F     V++ AMS       LIAV T    V LCDLKSG S+H+L GH   V    WSP   +LLATGS+D+ V LWDVR + +S  L +LDQ   H G    + ++  A+  AH G V  L FTP G  L+S GTD RLRLW+  +G+NTL+NY    N+       K++Q    RG   D     ++  P+  S  + +F +   GG S                     HRL GH + VQ   +  +  ++ +GG+DS +LV+  D  R  D EE++    E     P    +      D WSSDED
Sbjct:    3 NFLSCRENGTLDPVALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPVEARYLLSGGADGVIAIYD-----------THNLSGTPSSTAEAVCTVGRSHRHV-------------------------------HKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNVLLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLATGSQDNKVLLWDVRSAKSS--LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKISNE-----SKKSVQFTVSRGSSPD-----VVFVPDDSS--IAMFDVF--GGTS--------------------LHRLVGHYNYVQCCVFNPNTQELYSGGSDSNILVWVPDLGRGEDYEEAKKQKAE-----PSQRTQNVQAYQDTWSSDED 400          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1002602842|ref|XP_015680578.1| (PREDICTED: DNA excision repair protein ERCC-8 [Protobothrops mucrosquamatus])

HSP 1 Score: 215.698 bits (548), Expect = 3.281e-61
Identity = 129/344 (37.50%), Postives = 176/344 (51.16%), Query Frame = 0
Query:    6 LITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
             ++ R  G   P  L  +  TRR++   L+   +V+      IN +D++P + RY+L    D T+ LYD+E                      +   TP     V  ++G                  R  P  G H+YSV +VQWYP DTG+F S S D ++++WDTN    A  F     V++   S       LIAVGT   +V+LCD KSG  SH+L GH Q +  V+WSP  E +LATGS DS V+LWDVRR  ASACL TLDQ    + +A     A  A+  AH G V  L FT +G +L++ GTD R+RLWN+ SG+NTL+NY    N+   G + 
Sbjct:    4 FLSARQAGIDDPLRLRRAEATRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSKTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADVFHFDGTVYSHHTSPVATRHCLIAVGTKSSKVQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSSGENTLVNYGKVSNESKKGLRF 298          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|927134516|ref|XP_013911063.1| (PREDICTED: DNA excision repair protein ERCC-8 isoform X1 [Thamnophis sirtalis])

HSP 1 Score: 214.927 bits (546), Expect = 8.119e-61
Identity = 124/324 (38.27%), Postives = 170/324 (52.47%), Query Frame = 0
Query:   26 TRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
            TRR++   L+   +V+      IN +D++P + RY+L    D T+ LYD+E                      +   TP     V  ++G                  R  P  G H+YSV +VQWYP DTG+F S S D ++++WDTN    A  F     V++  MS       LIAVGT   +++LCD KSG  SH+L GH Q +  V+WSP  E +LATGS DS V+LWDVRR  ASACL TLDQ    + +A     A  A+  AH G V  L FT +G +L++ GTD R+RLWN+ +G+NTL+NY    N+   G + 
Sbjct:   24 TRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSRTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADEFHFDGTVYSHHMSPVATRHCLIAVGTKSSKIQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSTGENTLVNYGKVSNESKKGLRF 298          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|927134519|ref|XP_013911064.1| (PREDICTED: DNA excision repair protein ERCC-8 isoform X2 [Thamnophis sirtalis])

HSP 1 Score: 212.231 bits (539), Expect = 1.265e-60
Identity = 122/311 (39.23%), Postives = 166/311 (53.38%), Query Frame = 0
Query:   26 TRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNY 336
            TRR++   L+   +V+      IN +D++P + RY+L    D T+ LYD+E                      +   TP     V  ++G                  R  P  G H+YSV +VQWYP DTG+F S S D ++++WDTN    A  F     V++  MS       LIAVGT   +++LCD KSG  SH+L GH Q +  V+WSP  E +LATGS DS V+LWDVRR  ASACL TLDQ    + +A     A  A+  AH G V  L FT +G +L++ GTD R+RLWN+ +G+NTL+NY
Sbjct:   24 TRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSRTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADEFHFDGTVYSHHMSPVATRHCLIAVGTKSSKIQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSTGENTLVNY 285          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|507562575|ref|XP_004664976.1| (PREDICTED: DNA excision repair protein ERCC-8 [Jaculus jaculus])

HSP 1 Score: 210.305 bits (534), Expect = 3.445e-59
Identity = 150/480 (31.25%), Postives = 218/480 (45.42%), Query Frame = 0
Query:   10 RAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDD 489
            R  G L P     +  TRR++   L+    V+      +N +D++  + RY+L    D  + LYD+E    Q                   + T +    +  +  D+                        H YSV +VQWYP DTG+F S S D +++VWDTN F +A TF+    V++  MS       LIAVGT   +V+LCDLKSG  SH+L GH Q +  V+WSP  +++LAT S DS V+LWDVRR  AS CL TLDQ   H G  +    A  +   AH G V  L FT +G  L++ GTD R+RLWN+ SG+NTL+NY    ND   G K     + G             +  P+G +  + ++ + S                      G+    L+GH   V    ++ D  ++ +G  D  +L +  S H+     + D E     P    + +A   D WSS +D+
Sbjct:    8 RQAGLLDPLHFRRTQATRRVLELELNKDRNVERIHDHGVNTLDIELVEGRYMLSGGSDGVIVLYDLENSSRQP------------------YYTCKAVCSIDRSHHDM------------------------HSYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNRFQAADTFNFEETVYSHQMSPVATKHCLIAVGTKGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSDYILATASADSKVKLWDVRR--ASGCLMTLDQ---HNGEKS---QAAESANTAHNGKVNGLCFTKDGLHLLTVGTDNRMRLWNSSSGENTLVNYGKVCNDSKKGLKFTV--SCG--------CSTEFVFVPHGYN--IAVYAVFS----------------------GEQITVLKGHYRNVDCCVFQSDFQELYSGSRDCNILAWVPSLHEP----VPDDE-----PTSKSQFSAVFEDAWSSSDDE 394          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1049276709|ref|XP_017578833.1| (PREDICTED: DNA excision repair protein ERCC-8 [Pygocentrus nattereri])

HSP 1 Score: 210.305 bits (534), Expect = 3.571e-59
Identity = 159/486 (32.72%), Postives = 218/486 (44.86%), Query Frame = 0
Query:    5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF-DCSRHDKEESRLLDGENDGQYPKGSKRRAAEA-ADQWSSDED 488
            S +  R  G   P  L  +  TRR++   L+   +V+      IN ID++  + RY+L    D  + +YD+E             +   P      H T +            T GR S  +               H++SV +VQWYP DTG+FVS S D +++VWDT     A  F     V+   MS       LIAVGT D +V+LCDLKSG   H+L GH   V +V WSP  EH+LAT S DS VR+WDVRR  AS  L TLDQ    + +A+       ++  AH G V  L FT +G +L++AGTD R+RLWN+ +G+NTL+NY    N+              R+G+              G S E +  P  S   M G                G+    LRGH + V    +  D  ++ +GG D  +L +    RH   E      E  G    G++     A  D WSSDED
Sbjct:    3 SFLIARQTGVDEPVRLRRAESTRRVLSLELNHDRDVECIHGNGINTIDIEVIEGRYMLSGGSDGVIVIYDLE------------NNSKKP------HYTCKAVC---------TVGRSSRYV---------------HKFSVETVQWYPHDTGMFVSSSFDKTMKVWDTETLKPAEVFQFEGNVYCHHMSPIARKHGLIAVGTKDPKVQLCDLKSGSRIHILQGHRGEVLSVKWSPRYEHILATASTDSRVRVWDVRR--ASGSLFTLDQHNGDKSKASS-----ESVNTAHDGRVNGLCFTDDGLYLLTAGTDDRMRLWNSATGENTLVNYGKVVNE-------------SRKGV--------KFTVSRGCSPEFVFVPCGSSVAMYGLH-------------TGELVTMLRGHYNNVDCCEFHPDYQELYSGGKDCNILAWVPVLRHPDTED-----EGAGSVKGGAQTSVNPAFEDAWSSDED 400          
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|944214464|gb|KQK81012.1| (DNA excision repair protein ERCC-8 [Amazona aestiva])

HSP 1 Score: 208.379 bits (529), Expect = 2.068e-58
Identity = 128/344 (37.21%), Postives = 178/344 (51.74%), Query Frame = 0
Query:    6 LITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
            LI+ R  G   P  L  +  TRR++   L+   +V+      IN +D++P + R +L    D  + LYD+E                                       +LTRG   +S    AL +  +     H++SV +VQWYP DTG+F S S D ++++WDTN   SA  F     V++  MS    +  L+AVGT   +V+LCDLKSG  SH+L GH Q V  VAWSP  E++LATGS D  V+LWDVRR  AS CL TLDQ    + +A+       A   AH G V  L +T +G +L++ GTD R+RLWN+ +G+NTL+NY    N+   G K 
Sbjct:    4 LISARQAGLDDPLRLRRAESTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRXMLSGGSDGVIVLYDLE---------------------------------------NLTRG---TSYTCKALCSVGRGHPDVHKFSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRVKLWDVRR--ASGCLTTLDQHNGEKSKASS-----EAANSAHTGRVNGLCYTNDGLYLLTTGTDDRMRLWNSFTGENTLVNYGKVCNESRKGLKF 298          
The following BLAST results are available for this feature:
BLAST of EWM24630.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106150|gb|EWM24630.1|0.000e+0100.00cockayne syndrome 1 [Nannochloropsis gaditana][more]
gi|298709159|emb|CBJ31103.1|3.590e-8135.69WD-repeat protein, putative [Ectocarpus siliculosu... [more]
gi|260832311|ref|XP_002611101.1|3.946e-6633.88hypothetical protein BRAFLDRAFT_206058 [Branchiost... [more]
gi|1126196613|ref|XP_019631468.1|6.826e-6633.47PREDICTED: DNA excision repair protein ERCC-8-like... [more]
gi|1002602842|ref|XP_015680578.1|3.281e-6137.50PREDICTED: DNA excision repair protein ERCC-8 [Pro... [more]
gi|927134516|ref|XP_013911063.1|8.119e-6138.27PREDICTED: DNA excision repair protein ERCC-8 isof... [more]
gi|927134519|ref|XP_013911064.1|1.265e-6039.23PREDICTED: DNA excision repair protein ERCC-8 isof... [more]
gi|507562575|ref|XP_004664976.1|3.445e-5931.25PREDICTED: DNA excision repair protein ERCC-8 [Jac... [more]
gi|1049276709|ref|XP_017578833.1|3.571e-5932.72PREDICTED: DNA excision repair protein ERCC-8 [Pyg... [more]
gi|944214464|gb|KQK81012.1|2.068e-5837.21DNA excision repair protein ERCC-8 [Amazona aestiv... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6057rna6057Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications