EWM24630.1, cds6042 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|585106150|gb|EWM24630.1| (cockayne syndrome 1 [Nannochloropsis gaditana]) HSP 1 Score: 1063.91 bits (2750), Expect = 0.000e+0 Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query: 1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH 523
MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH
Sbjct: 1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDDNSGRVDHEEGFVPPILRQYDRDNSHRSTSRRREH 523
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|298709159|emb|CBJ31103.1| (WD-repeat protein, putative [Ectocarpus siliculosus]) HSP 1 Score: 273.092 bits (697), Expect = 3.590e-81 Identity = 197/552 (35.69%), Postives = 262/552 (47.46%), Query Frame = 0
Query: 1 MVCQSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDG-SMPSR---VQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQ--------------------------DAD----------------HRGRATGILSAPTA-----LAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFD------CSRHDKEESRLLDGENDGQYPKGSKRRAAEAA---DQWSSDEDDNSG 492
M + RR G LR + + T R+ L +E+KS GP+ +D+D +ERYLL D TV ++D++ + S + G D S P R R R V +G R +S S G + HR+SV+ VQWYP DTG+FVSG+ DG V+VWDTN F KV++ +MS LIAVG+D + RLCD++SG +H L+GH++ V+ AWSP E LLATGS D TVRLWD+RRSGASACL +LDQ AD RG I AP A A+AHAG V SL F P G L++AGTD RLRLW +G+NT+ NY T N + + + AGRR + +PN +SG+VL+FPL + G+P +LRGH D VQ AYR +++T GAD L+L++ SR L G G+KRR E+ D WSSD++ G
Sbjct: 1 MALFRALERRRAGVLRQRSTADKLRTSRVSQLDLDINVEIKSPHHGPVTWLDVDSAEERYLLTGGADCTVAVFDLDGAGEKRPSLASGDDNNSGPRRHGPAAETVAARRRRPKVLREVGRTPRVPLSQSSGGGGGGSYGG-----HRHSVSVVQWYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTVRLWDIRRSGASACLISLDQHQEDDEEEQDEEEDDHTVRCGSGVGGSADGSDDGRGSGVRGSGKRKRGYLKHIKLAPHASRASKFARAHAGPVNSLCFAPEGLHLLTAGTDNRLRLWEVETGRNTMTNYLQTKNKRRRPFGMAVGRPAGRR--------SETVFFPNDKSGDVLVFPLHT--------------------PDGRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWSAAGPPWASRASYLPPPLAAGAG------GTKRRLGESTEDQDMWSSDDEGGDG 513
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|260832311|ref|XP_002611101.1| (hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae] >gi|229296471|gb|EEN67111.1| hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae]) HSP 1 Score: 228.409 bits (581), Expect = 3.946e-66 Identity = 165/487 (33.88%), Postives = 227/487 (46.61%), Query Frame = 0
Query: 5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF--DCSR-HDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDED 488
+ ++ R G L P AL + TRR LS +VK +N +DLDP + RYLL D + +YD + G+ S +++ R+ HV H+YSV +V+WYP DTG+F S S D +++VWDTN + A F V++ AMS LIAV T V LCDLKSG S+H+L GH V WSP +LLATGS+D+ V LWDVR + +S L +LDQ H G + ++ A+ AH G V L FTP G L+S GTD RLRLW+ +G+NTL+NY ND K++Q RG D ++ P+ S + +F + GG S HRL GH + VQ + D ++ +GG+DS +LV+ D R D EES+ + P + D WSSDED
Sbjct: 3 NFLSCRENGTLDPLALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPAESRYLLSGGADGVIAVYD-----------THNLSGTPSSTAEAVCTVGRSHRHV-------------------------------HKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNALLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLATGSQDNKVLLWDVRSAKSS--LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKICND-----SKKSVQFTVSRGSSPD-----VVFVPDDSS--IAMFDVF--GGTS--------------------LHRLVGHYNYVQCCVFNPDTQELYSGGSDSNILVWVPDLGRGEDYEESK--------KQPSQRSQNLQAYQDTWSSDED 397
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1126196613|ref|XP_019631468.1| (PREDICTED: DNA excision repair protein ERCC-8-like [Branchiostoma belcheri]) HSP 1 Score: 228.024 bits (580), Expect = 6.826e-66 Identity = 163/487 (33.47%), Postives = 228/487 (46.82%), Query Frame = 0
Query: 5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF--DCSR-HDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDED 488
+ ++ R G L P AL + TRR LS +VK +N +DLDP + RYLL D + +YD + G+ S +++ R+ HV H+YSV +V+WYP DTG+F S S D +++VWDTN+ + A F V++ AMS LIAV T V LCDLKSG S+H+L GH V WSP +LLATGS+D+ V LWDVR + +S L +LDQ H G + ++ A+ AH G V L FTP G L+S GTD RLRLW+ +G+NTL+NY N+ K++Q RG D ++ P+ S + +F + GG S HRL GH + VQ + + ++ +GG+DS +LV+ D R D EE++ E P + D WSSDED
Sbjct: 3 NFLSCRENGTLDPVALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPVEARYLLSGGADGVIAIYD-----------THNLSGTPSSTAEAVCTVGRSHRHV-------------------------------HKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNVLLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLATGSQDNKVLLWDVRSAKSS--LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKISNE-----SKKSVQFTVSRGSSPD-----VVFVPDDSS--IAMFDVF--GGTS--------------------LHRLVGHYNYVQCCVFNPNTQELYSGGSDSNILVWVPDLGRGEDYEEAKKQKAE-----PSQRTQNVQAYQDTWSSDED 400
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1002602842|ref|XP_015680578.1| (PREDICTED: DNA excision repair protein ERCC-8 [Protobothrops mucrosquamatus]) HSP 1 Score: 215.698 bits (548), Expect = 3.281e-61 Identity = 129/344 (37.50%), Postives = 176/344 (51.16%), Query Frame = 0
Query: 6 LITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
++ R G P L + TRR++ L+ +V+ IN +D++P + RY+L D T+ LYD+E + TP V ++G R P G H+YSV +VQWYP DTG+F S S D ++++WDTN A F V++ S LIAVGT +V+LCD KSG SH+L GH Q + V+WSP E +LATGS DS V+LWDVRR ASACL TLDQ + +A A A+ AH G V L FT +G +L++ GTD R+RLWN+ SG+NTL+NY N+ G +
Sbjct: 4 FLSARQAGIDDPLRLRRAEATRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSKTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADVFHFDGTVYSHHTSPVATRHCLIAVGTKSSKVQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSSGENTLVNYGKVSNESKKGLRF 298
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|927134516|ref|XP_013911063.1| (PREDICTED: DNA excision repair protein ERCC-8 isoform X1 [Thamnophis sirtalis]) HSP 1 Score: 214.927 bits (546), Expect = 8.119e-61 Identity = 124/324 (38.27%), Postives = 170/324 (52.47%), Query Frame = 0
Query: 26 TRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
TRR++ L+ +V+ IN +D++P + RY+L D T+ LYD+E + TP V ++G R P G H+YSV +VQWYP DTG+F S S D ++++WDTN A F V++ MS LIAVGT +++LCD KSG SH+L GH Q + V+WSP E +LATGS DS V+LWDVRR ASACL TLDQ + +A A A+ AH G V L FT +G +L++ GTD R+RLWN+ +G+NTL+NY N+ G +
Sbjct: 24 TRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSRTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADEFHFDGTVYSHHMSPVATRHCLIAVGTKSSKIQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSTGENTLVNYGKVSNESKKGLRF 298
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|927134519|ref|XP_013911064.1| (PREDICTED: DNA excision repair protein ERCC-8 isoform X2 [Thamnophis sirtalis]) HSP 1 Score: 212.231 bits (539), Expect = 1.265e-60 Identity = 122/311 (39.23%), Postives = 166/311 (53.38%), Query Frame = 0
Query: 26 TRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNY 336
TRR++ L+ +V+ IN +D++P + RY+L D T+ LYD+E + TP V ++G R P G H+YSV +VQWYP DTG+F S S D ++++WDTN A F V++ MS LIAVGT +++LCD KSG SH+L GH Q + V+WSP E +LATGS DS V+LWDVRR ASACL TLDQ + +A A A+ AH G V L FT +G +L++ GTD R+RLWN+ +G+NTL+NY
Sbjct: 24 TRRVLSLELNKNKDVERIHGSGINTLDIEPVENRYMLSGGSDGTIVLYDLE----------------------NFSRTPCYTCKVICSVG------------------RNHP--GVHKYSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLQPADEFHFDGTVYSHHMSPVATRHCLIAVGTKSSKIQLCDFKSGSCSHILQGHTQEILAVSWSPRYEFILATGSADSRVKLWDVRR--ASACLLTLDQHNGEKSKA-----ASEAINTAHNGRVNGLCFTSDGLYLLTIGTDDRMRLWNSSTGENTLVNY 285
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|507562575|ref|XP_004664976.1| (PREDICTED: DNA excision repair protein ERCC-8 [Jaculus jaculus]) HSP 1 Score: 210.305 bits (534), Expect = 3.445e-59 Identity = 150/480 (31.25%), Postives = 218/480 (45.42%), Query Frame = 0
Query: 10 RAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPKGSKRRAAEAADQWSSDEDD 489
R G L P + TRR++ L+ V+ +N +D++ + RY+L D + LYD+E Q + T + + + D+ H YSV +VQWYP DTG+F S S D +++VWDTN F +A TF+ V++ MS LIAVGT +V+LCDLKSG SH+L GH Q + V+WSP +++LAT S DS V+LWDVRR AS CL TLDQ H G + A + AH G V L FT +G L++ GTD R+RLWN+ SG+NTL+NY ND G K + G + P+G + + ++ + S G+ L+GH V ++ D ++ +G D +L + S H+ + D E P + +A D WSS +D+
Sbjct: 8 RQAGLLDPLHFRRTQATRRVLELELNKDRNVERIHDHGVNTLDIELVEGRYMLSGGSDGVIVLYDLENSSRQP------------------YYTCKAVCSIDRSHHDM------------------------HSYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNRFQAADTFNFEETVYSHQMSPVATKHCLIAVGTKGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSDYILATASADSKVKLWDVRR--ASGCLMTLDQ---HNGEKS---QAAESANTAHNGKVNGLCFTKDGLHLLTVGTDNRMRLWNSSSGENTLVNYGKVCNDSKKGLKFTV--SCG--------CSTEFVFVPHGYN--IAVYAVFS----------------------GEQITVLKGHYRNVDCCVFQSDFQELYSGSRDCNILAWVPSLHEP----VPDDE-----PTSKSQFSAVFEDAWSSSDDE 394
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|1049276709|ref|XP_017578833.1| (PREDICTED: DNA excision repair protein ERCC-8 [Pygocentrus nattereri]) HSP 1 Score: 210.305 bits (534), Expect = 3.571e-59 Identity = 159/486 (32.72%), Postives = 218/486 (44.86%), Query Frame = 0
Query: 5 SLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVF-DCSRHDKEESRLLDGENDGQYPKGSKRRAAEA-ADQWSSDED 488
S + R G P L + TRR++ L+ +V+ IN ID++ + RY+L D + +YD+E + P H T + T GR S + H++SV +VQWYP DTG+FVS S D +++VWDT A F V+ MS LIAVGT D +V+LCDLKSG H+L GH V +V WSP EH+LAT S DS VR+WDVRR AS L TLDQ + +A+ ++ AH G V L FT +G +L++AGTD R+RLWN+ +G+NTL+NY N+ R+G+ G S E + P S M G G+ LRGH + V + D ++ +GG D +L + RH E E G G++ A D WSSDED
Sbjct: 3 SFLIARQTGVDEPVRLRRAESTRRVLSLELNHDRDVECIHGNGINTIDIEVIEGRYMLSGGSDGVIVIYDLE------------NNSKKP------HYTCKAVC---------TVGRSSRYV---------------HKFSVETVQWYPHDTGMFVSSSFDKTMKVWDTETLKPAEVFQFEGNVYCHHMSPIARKHGLIAVGTKDPKVQLCDLKSGSRIHILQGHRGEVLSVKWSPRYEHILATASTDSRVRVWDVRR--ASGSLFTLDQHNGDKSKASS-----ESVNTAHDGRVNGLCFTDDGLYLLTAGTDDRMRLWNSATGENTLVNYGKVVNE-------------SRKGV--------KFTVSRGCSPEFVFVPCGSSVAMYGLH-------------TGELVTMLRGHYNNVDCCEFHPDYQELYSGGKDCNILAWVPVLRHPDTED-----EGAGSVKGGAQTSVNPAFEDAWSSDED 400
BLAST of EWM24630.1 vs. NCBI_GenBank
Match: gi|944214464|gb|KQK81012.1| (DNA excision repair protein ERCC-8 [Amazona aestiva]) HSP 1 Score: 208.379 bits (529), Expect = 2.068e-58 Identity = 128/344 (37.21%), Postives = 178/344 (51.74%), Query Frame = 0
Query: 6 LITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEHLLATGSRDSTVRLWDVRRSGASACLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKI 349
LI+ R G P L + TRR++ L+ +V+ IN +D++P + R +L D + LYD+E +LTRG +S AL + + H++SV +VQWYP DTG+F S S D ++++WDTN SA F V++ MS + L+AVGT +V+LCDLKSG SH+L GH Q V VAWSP E++LATGS D V+LWDVRR AS CL TLDQ + +A+ A AH G V L +T +G +L++ GTD R+RLWN+ +G+NTL+NY N+ G K
Sbjct: 4 LISARQAGLDDPLRLRRAESTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRXMLSGGSDGVIVLYDLE---------------------------------------NLTRG---TSYTCKALCSVGRGHPDVHKFSVETVQWYPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRVKLWDVRR--ASGCLTTLDQHNGEKSKASS-----EAANSAHTGRVNGLCYTNDGLYLLTTGTDDRMRLWNSFTGENTLVNYGKVCNESRKGLKF 298 The following BLAST results are available for this feature:
BLAST of EWM24630.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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