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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100117g18.408.mrna |
| Orig protein id | gnl|cribi|Naga_100117g18.408 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:456328..458725 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6055 ID=rna6055|Name=rna6055|organism=Nannochloropsis gaditana|type=mRNA|length=459bp
ATGGAAACAAATTGGGCCGGTATGAGCGTGTACCTGGCAACCCCTACAAT
GGCCCCGGCAAAGGCGGGCGCATTAGTTACGGACGGGGAAATGGAGGCCG
TGGAGGCCGTAATGGACATGGTCGGGGCAAAGGAGCCTCTCGAACTAGTC
CATACAGATGTACTTGGACCAGTTGAAGTAGAATCACTTGGAGGCGCAAG
ATACGCGATAGGATTTACGGACGATTACACCCGATGGAGGGTAGTGTATC
CGATGAAACATAAGTCGGAATCACTTGATTGTCTGAAGCGATATATACAG
GATATGAATATATCATTTCGTGATCACAAAGTGAATACTTTGCGCGGATT
AAGATCGGACAATGGAGGTGAATACACTGGCATAGATTTCAAGAATTTCT
GCAAGAATCATGGGATTAGACAGGATTTTGGCCGGATTGGGAAAGAGTTT
CTGGGCTGA back to topprotein sequence of rna6055 >rna6055-protein ID=rna6055-protein|Name=rna6055|organism=Nannochloropsis gaditana|type=polypeptide|length=556bp
MSKNPSIQDFQSRTFSIRQDSKQARNLESLRTSGSILSPVKPASIRRLRL
VSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVA
RASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRAL
LTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTL
RTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLA
YLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKVDMA
PAHEPSPNETPTSPAEMREPTSHLASSGTKGTSASVEYSRTISLLALERT
SSSRLGDRPISREISASFKAQSSISTSSSAKILSLQSFGDSQESCGVVHR
PANRSTSLECISGQSPSPCPTAGTSDIKASYQLPRIPPSGSGGVDQAGAH
RQLPSFPSTMSGSPPRVIQVEAEVHEEDEDASLDDSEDVDEYSVGDVAGE
VSCDDYDLVRDPLDGRLVEVLVRVHEAAPDEPEPSQSSQQALDGWSQGTR
HTHAPE back to topmRNA from alignment at CM002467.1:456328..458725+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6055 ID=rna6055|Name=rna6055|organism=Nannochloropsis gaditana|type=mRNA|length=2398bp|location=Sequence derived from alignment at CM002467.1:456328..458725+ (Nannochloropsis gaditana)
CAGCGTCCAGGTGCTTACACAGGGCGGTCACCTACATAGCTTACAAGGCC
TTACAGGGTTGCCTATTCGTATCAAACCTTTTACTTTCCTACACATCAGT
ACAGAAATTTGTCAAAAACCCATGTCAAAAAATCCTAGCATACAGGATTT
TCAATCAAGAACTTTCAGCATTCGACAGGTAATCACGACTTATGCACGAC
CGTTAGCTACCATGACGCTATTCGTACACACGTCAAAACTGTTCGAGTAG
AAAAGAGAAGATGCGTGAAAAATGTCATGAAAATAATTGTAATAAATCGT
TAGAAAGCTACTTCACCATCCTATGTCATCTCCTGTGTAACTCGCTCGCT
TCATGGTCCTTTAAATTTGTCGTGGACCTTACCCCAGTAATTGTACGTTC
CACCATCCCTGGCTTTCATGGCAGGACTCGAAACAAGCCCGGAATTTGGA
ATCACTTCGTACATCGGGAAGTATTCTTAGCCCAGTGAAGCCTGCATCGA
TTCGACGCCTCCGATTAGTCAGCAAACGTGCTATTCAGGACCGAGACGAT
TTTCACATCCTTCTATTTGGCTCGTTTTGTCTATGTTTCAATGCTAGTTT
TGTAAATTTGGTAACCTTCAGCAGCTACCTAAAATTAGCAACGGCGCACG
TCACTGGTCTCGTGGCTCGTGCCTCTCAGACAATCGCTGACGGTGCTTGG
CAACTCGTCTATCTCCCAATTTCTGtttttctttgcttcttgGTGGGGTC
TGTCGTTGGAGGATATACCGTCTCTCATGAGACATTCTATCTAGGTATGT
TGTTGTGACGTCAaaaattttaaaaaatgtgCACACGTCCGTagagaaat
gggaaaaaagcgGGTACGATTTTGGAAAGGCCACCTCTCATCTTGTATCT
GCATGTGGTGCGTCTTCTTTGTCTGATACCTGTATCTCGCCAACCATCAC
ATCCCTTTTATTAAGGACGATCCTATGGGCGAGCGCTTCTCACAATCGCC
CTTCTGCAAGGCTCGGCTCTTGTCGTCAACAAAGTTCACGTGGACGAGGG
ACACGTGCAACACTACTACATCTACGTCTGCGCTGTTGCCATGGGTCTCC
AGAACTCCCTGACTAGCAAGTACTCGGGTAATACGCTGCGTACCACTCAC
GTCACGGGTGCGACTACAGATTTGGGAATTGCGATCGGCCACCTCTTGAA
GGGCCGGAGGGGTGACCTCTGGAAGGTTAAGTTGCACTCCACAGCCATTT
TAGGCTTTCTGGTTGGTGGTGTCATGGGTCGACTTGCCTACCTCCGCTTC
GAGGAAACTGCACTACTTTTCAATGTGACCATAATGACTGTGTTGGGCCT
AAGCCATTTACTCTGGATCAGTAGGCGCAAGGGTCTTTCGCTCTGGAAGG
TATTCAAATCTACCACAGACCTCAAAGTCGACATGGCCCCGGCACACGAA
CCGTCTCCAAACGAGACACCAACATCACCCGCCGAAATGCGAGAGCCTAC
TTCCCATCTAGCCAGCTCAGGAACGAAGGGCACCAGTGCGTCTGTCGAGT
ATTCTCGCACTATCAGCCTCTTGGCCTTGGAGAGAACTAGCAGCAGTCGC
CTCGGAGATCGACCCATTTCACGCGAGATATCCGCTTCGTTCAAAGCGCA
GAGTTCCATAAGCACTTCTTCCTCAGCCAAAATTTTGTCACTCCAATCAT
TTGGCGACTCGCAAGAGTCTTGCGGCGTGGTTCATCGCCCTGCTAATCGC
AGTACCAGCTTGGAGTGTATTTCCGGACAgagcccctctccttgtccgac
AGCAGGCACTTCGGATATTAAAGCTTCGTACCAATTGCCTCGAATCCCAC
CGTCCGGAAGCGGAGGGGTCGATCAAGCCGGGGCCCATCGccagcttcct
tcctttccgtcaACAATGAGTGGGAGTCCGCCGCGCGTCATtcaggtgga
ggcggaagtgcatgaggaggacgaggatgcgTCGCTGGATGATAGTGAAG
ACGTAGACGAATACAGTGTTGGGGACGTAGCGGGAGAGGTGAGCTGTGAC
GACTACGATCTCGTCCGGGACCCCCTGGACGGGAGGCTCGTTGAGGTACT
CGTCCGCGTCCACGAGGCAGCGCCCGACGAGCCCGAGCCGTCCCAGTCAA
GCCAGCAAGCGCTTGACGGCTGGTCTCAGGGTACCAGGCACACGCACGCT
CCCGAATGATAATTGTAGAACTAATGTTTTGCCGCATTCGCTGACGAAGC
CAAAAGCAAGGAATAGGGTCAAAGACAAACAAACAGCGATGGCTCAAAAC
TCTAGTTTACCTACGAAATTTAACCAGTAGTACTCTCCTGACATATAGTA
CAAATAAAATTGGACCCTTCCACAATCATCTTTTAGAGAATGCCTTGT back to topCoding sequence (CDS) from alignment at CM002467.1:456328..458725+ >rna6055 ID=rna6055|Name=rna6055|organism=Nannochloropsis gaditana|type=CDS|length=5013bp|location=Sequence derived from alignment at CM002467.1:456328..458725+ (Nannochloropsis gaditana)
ATGTCAAAAAATCCTAGCATACAGGATTTTCAATCAAGAACTTTCAGCAT
TCGACAGGACTCGAAACAAGCCCGGAATTTGGAATCACTTCGTACATCGG
GAAGTATTCTTAGCCCAGTGAAGCCTGCATCGATTCGACGCCTCCGATTA
GTCAGCAAACGTGCTATTCAGGACCGAGACGATTTTCACATCCTTCTATT
TGGCTCGTTTTGTCTATGTTTCAATGCTAGTTTTGTAAATTTGGTAACCT
TCAGCAGCTACCTAAAATTAGCAACGGCGCACGTCACTGGTCTCGTGGCT
CGTGCCTCTCAGACAATCGCTGACGGTGCTTGGCAACTCGTCTATCTCCC
AATTTCTGtttttctttgcttcttgGTGGGGTCTGTCGTTGGAGGATATA
CCGTCTCTCATGAGACATTCTATCTAGGACGATCCTATGGGCGAGCGCTT
CTCACAATCGCCCTTCTGCAAGGCTCGGCTCTTGTCGTCAACAAAGTTCA
CGTGGACGAGGGACACGTGCAACACTACTACATCTACGTCTGCGCTGTTG
CCATGGGTCTCCAGAACTCCCTGACTAGCAAGTACTCGGGTAATACGCTG
CGTACCACTCACGTCACGGGTGCGACTACAGATTTGGGAATTGCGATCGG
CCACCTCTTGAAGGGCCGGAGGGGTGACCTCTGGAAGGTTAAGTTGCACT
CCACAGCCATTTTAGGCTTTCTGGTTGGTGGTGTCATGGGTCGACTTGCC
TACCTCCGCTTCGAGGAAACTGCACTACTTTTCAATGTGACCATAATGAC
TGTGTTGGGCCTAAGCCATTTACTCTGGATCAGTAGGCGCAAGGGTCTTT
CGCTCTGGAAGGTATTCAAATCTACCACAGACCTCAAAGTCGACATGGCC
CCGGCACACGAACCGTCTCCAAACGAGACACCAACATCACCCGCCGAAAT
GCGAGAGCCTACTTCCCATCTAGCCAGCTCAGGAACGAAGGGCACCAGTG
CGTCTGTCGAGTATTCTCGCACTATCAGCCTCTTGGCCTTGGAGAGAACT
AGCAGCAGTCGCCTCGGAGATCGACCCATTTCACGCGAGATATCCGCTTC
GTTCAAAGCGCAGAGTTCCATAAGCACTTCTTCCTCAGCCAAAATTTTGT
CACTCCAATCATTTGGCGACTCGCAAGAGTCTTGCGGCGTGGTTCATCGC
CCTGCTAATCGCAGTACCAGCTTGGAGTGTATTTCCGGACAgagcccctc
tccttgtccgacAGCAGGCACTTCGGATATTAAAGCTTCGTACCAATTGC
CTCGAATCCCACCGTCCGGAAGCGGAGGGGTCGATCAAGCCGGGGCCCAT
CGccagcttccttcctttccgtcaACAATGAGTGGGAGTCCGCCGCGCGT
CATtcaggtggaggcggaagtgcatgaggaggacgaggatgcgTCGCTGG
ATGATAGTGAAGACGTAGACGAATACAGTGTTGGGGACGTAGCGGGAGAG
GTGAGCTGTGACGACTACGATCTCGTCCGGGACCCCCTGGACGGGAGGCT
CGTTGAGGTACTCGTCCGCGTCCACGAGGCAGCGCCCGACGAGCCCGAGC
CGTCCCAGTCAAGCCAGCAAGCGCTTGACGGCTGGTCTCAGGGTACCAGG
CACACGCACGCTCCCGAATGAATGTCAAAAAATCCTAGCATACAGGATTT
TCAATCAAGAACTTTCAGCATTCGACAGGACTCGAAACAAGCCCGGAATT
TGGAATCACTTCGTACATCGGGAAGTATTCTTAGCCCAGTGAAGCCTGCA
TCGATTCGACGCCTCCGATTAGTCAGCAAACGTGCTATTCAGGACCGAGA
CGATTTTCACATCCTTCTATTTGGCTCGTTTTGTCTATGTTTCAATGCTA
GTTTTGTAAATTTGGTAACCTTCAGCAGCTACCTAAAATTAGCAACGGCG
CACGTCACTGGTCTCGTGGCTCGTGCCTCTCAGACAATCGCTGACGGTGC
TTGGCAACTCGTCTATCTCCCAATTTCTGtttttctttgcttcttgGTGG
GGTCTGTCGTTGGAGGATATACCGTCTCTCATGAGACATTCTATCTAGGA
CGATCCTATGGGCGAGCGCTTCTCACAATCGCCCTTCTGCAAGGCTCGGC
TCTTGTCGTCAACAAAGTTCACGTGGACGAGGGACACGTGCAACACTACT
ACATCTACGTCTGCGCTGTTGCCATGGGTCTCCAGAACTCCCTGACTAGC
AAGTACTCGGGTAATACGCTGCGTACCACTCACGTCACGGGTGCGACTAC
AGATTTGGGAATTGCGATCGGCCACCTCTTGAAGGGCCGGAGGGGTGACC
TCTGGAAGGTTAAGTTGCACTCCACAGCCATTTTAGGCTTTCTGGTTGGT
GGTGTCATGGGTCGACTTGCCTACCTCCGCTTCGAGGAAACTGCACTACT
TTTCAATGTGACCATAATGACTGTGTTGGGCCTAAGCCATTTACTCTGGA
TCAGTAGGCGCAAGGGTCTTTCGCTCTGGAAGGTATTCAAATCTACCACA
GACCTCAAAGTCGACATGGCCCCGGCACACGAACCGTCTCCAAACGAGAC
ACCAACATCACCCGCCGAAATGCGAGAGCCTACTTCCCATCTAGCCAGCT
CAGGAACGAAGGGCACCAGTGCGTCTGTCGAGTATTCTCGCACTATCAGC
CTCTTGGCCTTGGAGAGAACTAGCAGCAGTCGCCTCGGAGATCGACCCAT
TTCACGCGAGATATCCGCTTCGTTCAAAGCGCAGAGTTCCATAAGCACTT
CTTCCTCAGCCAAAATTTTGTCACTCCAATCATTTGGCGACTCGCAAGAG
TCTTGCGGCGTGGTTCATCGCCCTGCTAATCGCAGTACCAGCTTGGAGTG
TATTTCCGGACAgagcccctctccttgtccgacAGCAGGCACTTCGGATA
TTAAAGCTTCGTACCAATTGCCTCGAATCCCACCGTCCGGAAGCGGAGGG
GTCGATCAAGCCGGGGCCCATCGccagcttccttcctttccgtcaACAAT
GAGTGGGAGTCCGCCGCGCGTCATtcaggtggaggcggaagtgcatgagg
aggacgaggatgcgTCGCTGGATGATAGTGAAGACGTAGACGAATACAGT
GTTGGGGACGTAGCGGGAGAGGTGAGCTGTGACGACTACGATCTCGTCCG
GGACCCCCTGGACGGGAGGCTCGTTGAGGTACTCGTCCGCGTCCACGAGG
CAGCGCCCGACGAGCCCGAGCCGTCCCAGTCAAGCCAGCAAGCGCTTGAC
GGCTGGTCTCAGGGTACCAGGCACACGCACGCTCCCGAATGAATGTCAAA
AAATCCTAGCATACAGGATTTTCAATCAAGAACTTTCAGCATTCGACAGG
ACTCGAAACAAGCCCGGAATTTGGAATCACTTCGTACATCGGGAAGTATT
CTTAGCCCAGTGAAGCCTGCATCGATTCGACGCCTCCGATTAGTCAGCAA
ACGTGCTATTCAGGACCGAGACGATTTTCACATCCTTCTATTTGGCTCGT
TTTGTCTATGTTTCAATGCTAGTTTTGTAAATTTGGTAACCTTCAGCAGC
TACCTAAAATTAGCAACGGCGCACGTCACTGGTCTCGTGGCTCGTGCCTC
TCAGACAATCGCTGACGGTGCTTGGCAACTCGTCTATCTCCCAATTTCTG
tttttctttgcttcttgGTGGGGTCTGTCGTTGGAGGATATACCGTCTCT
CATGAGACATTCTATCTAGGACGATCCTATGGGCGAGCGCTTCTCACAAT
CGCCCTTCTGCAAGGCTCGGCTCTTGTCGTCAACAAAGTTCACGTGGACG
AGGGACACGTGCAACACTACTACATCTACGTCTGCGCTGTTGCCATGGGT
CTCCAGAACTCCCTGACTAGCAAGTACTCGGGTAATACGCTGCGTACCAC
TCACGTCACGGGTGCGACTACAGATTTGGGAATTGCGATCGGCCACCTCT
TGAAGGGCCGGAGGGGTGACCTCTGGAAGGTTAAGTTGCACTCCACAGCC
ATTTTAGGCTTTCTGGTTGGTGGTGTCATGGGTCGACTTGCCTACCTCCG
CTTCGAGGAAACTGCACTACTTTTCAATGTGACCATAATGACTGTGTTGG
GCCTAAGCCATTTACTCTGGATCAGTAGGCGCAAGGGTCTTTCGCTCTGG
AAGGTATTCAAATCTACCACAGACCTCAAAGTCGACATGGCCCCGGCACA
CGAACCGTCTCCAAACGAGACACCAACATCACCCGCCGAAATGCGAGAGC
CTACTTCCCATCTAGCCAGCTCAGGAACGAAGGGCACCAGTGCGTCTGTC
GAGTATTCTCGCACTATCAGCCTCTTGGCCTTGGAGAGAACTAGCAGCAG
TCGCCTCGGAGATCGACCCATTTCACGCGAGATATCCGCTTCGTTCAAAG
CGCAGAGTTCCATAAGCACTTCTTCCTCAGCCAAAATTTTGTCACTCCAA
TCATTTGGCGACTCGCAAGAGTCTTGCGGCGTGGTTCATCGCCCTGCTAA
TCGCAGTACCAGCTTGGAGTGTATTTCCGGACAgagcccctctccttgtc
cgacAGCAGGCACTTCGGATATTAAAGCTTCGTACCAATTGCCTCGAATC
CCACCGTCCGGAAGCGGAGGGGTCGATCAAGCCGGGGCCCATCGccagct
tccttcctttccgtcaACAATGAGTGGGAGTCCGCCGCGCGTCATtcagg
tggaggcggaagtgcatgaggaggacgaggatgcgTCGCTGGATGATAGT
GAAGACGTAGACGAATACAGTGTTGGGGACGTAGCGGGAGAGGTGAGCTG
TGACGACTACGATCTCGTCCGGGACCCCCTGGACGGGAGGCTCGTTGAGG
TACTCGTCCGCGTCCACGAGGCAGCGCCCGACGAGCCCGAGCCGTCCCAG
TCAAGCCAGCAAGCGCTTGACGGCTGGTCTCAGGGTACCAGGCACACGCA
CGCTCCCGAATGA back to top
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