EWM24629.1, cds6040 (CDS) Nannochloropsis gaditana

Overview
NameEWM24629.1
Unique Namecds6040
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:456449..456505 +
Alignment locationCM002467.1:456752..457121 +
Alignment locationCM002467.1:457293..458536 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24629.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100117g18.408.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:456449..456505 +
CM002467.1supercontigCM002467.1:456752..457121 +
CM002467.1supercontigCM002467.1:457293..458536 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010699DUF1275
Homology
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|585106149|gb|EWM24629.1| (hypothetical protein Naga_100117g18 [Nannochloropsis gaditana])

HSP 1 Score: 1136.32 bits (2938), Expect = 0.000e+0
Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0
Query:    1 MSKNPSIQDFQSRTFSIRQDSKQARNLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKVDMAPAHEPSPNETPTSPAEMREPTSHLASSGTKGTSASVEYSRTISLLALERTSSSRLGDRPISREISASFKAQSSISTSSSAKILSLQSFGDSQESCGVVHRPANRSTSLECISGQSPSPCPTAGTSDIKASYQLPRIPPSGSGGVDQAGAHRQLPSFPSTMSGSPPRVIQVEAEVHEEDEDASLDDSEDVDEYSVGDVAGEVSCDDYDLVRDPLDGRLVEVLVRVHEAAPDEPEPSQSSQQALDGWSQGTRHTHAPE 556
            MSKNPSIQDFQSRTFSIRQDSKQARNLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKVDMAPAHEPSPNETPTSPAEMREPTSHLASSGTKGTSASVEYSRTISLLALERTSSSRLGDRPISREISASFKAQSSISTSSSAKILSLQSFGDSQESCGVVHRPANRSTSLECISGQSPSPCPTAGTSDIKASYQLPRIPPSGSGGVDQAGAHRQLPSFPSTMSGSPPRVIQVEAEVHEEDEDASLDDSEDVDEYSVGDVAGEVSCDDYDLVRDPLDGRLVEVLVRVHEAAPDEPEPSQSSQQALDGWSQGTRHTHAPE
Sbjct:    1 MSKNPSIQDFQSRTFSIRQDSKQARNLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKVDMAPAHEPSPNETPTSPAEMREPTSHLASSGTKGTSASVEYSRTISLLALERTSSSRLGDRPISREISASFKAQSSISTSSSAKILSLQSFGDSQESCGVVHRPANRSTSLECISGQSPSPCPTAGTSDIKASYQLPRIPPSGSGGVDQAGAHRQLPSFPSTMSGSPPRVIQVEAEVHEEDEDASLDDSEDVDEYSVGDVAGEVSCDDYDLVRDPLDGRLVEVLVRVHEAAPDEPEPSQSSQQALDGWSQGTRHTHAPE 556          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|585105203|gb|EWM23918.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 249.21 bits (635), Expect = 4.051e-72
Identity = 124/272 (45.59%), Postives = 180/272 (66.18%), Query Frame = 0
Query:   26 NLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKV 297
            N+  +    S ++P  P  ++R +  S +   +R  F ++L  SF L  NA+F+N++T ++   +A+AHVTGLVARAS   A G   ++Y     +  F+ GS   G  V+ ETFYLGR+YGRAL  IA ++G AL+    + D      ++I++CA A GLQN LTSK+SGN +RTTH+TGA+TDLGIA+GH+LKGR+G+ WKVKLH  A+LGF VGG++G   Y RF  +ALLFN+ I T L ++H L+I+  +G+S   V +S TD+++
Sbjct:   66 NINDVPCPASKVNP--PQGLQRQK-SSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPD----SIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRM 330          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|585105557|gb|EWM24177.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 134.42 bits (337), Expect = 1.548e-31
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 0
Query:   65 LLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQH--YYIYVCAVAMGLQNSLTSKYSG 197
            +LFGS  L  NA ++N +T  +   + +AHVTG+VARAS   A+  W  + L +  + CF+ G+ +GG  +SHETFYLGR+Y RAL   A +QG ALV+      E H  H  Y+IY C +AMGLQNSLTSKY G
Sbjct:  186 VLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI------ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|1183424201|gb|ORY48517.1| (DUF1275-domain-containing protein [Rhizoclosmatium globosum])

HSP 1 Score: 127.487 bits (319), Expect = 6.630e-29
Identity = 71/217 (32.72%), Postives = 120/217 (55.30%), Query Frame = 0
Query:   59 RDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLK-GRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHL 274
            + +F+ ++FG+  L  NA F+N+VT +    +  +HVTG V+R + +I  G      L  S+   F+ G+ + GY V    F LGRSYG ALL  +++   + +  K  +  G       +  A A GLQN++ + YSG  +RTTH+TG  TD+G  +G   +     ++W++ +H   ++ ++VGGV G+LAY    E +LLF   +  +  +++L
Sbjct:    6 QKEFNTIVFGACILSANAGFINVVTLAGVFSVTVSHVTGNVSRVAISIFQGDLTTAALVTSILFSFMFGAFISGYMVGDHKFVLGRSYGYALLLESVMLFMSYISLKGELIVGE------WCAAFACGLQNAMATSYSGLVVRTTHMTGIATDIGNILGQACRQDSHAEVWRLYVHVPIMISYMVGGVFGQLAYYFLHEQSLLFPCFLTGITAVTYL 216          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|488861418|ref|WP_002773657.1| (DUF1275 domain-containing protein [Leptonema illini] >gi|373875624|gb|EHQ07618.1| protein of unknown function DUF1275 [Leptonema illini DSM 21528])

HSP 1 Score: 123.635 bits (309), Expect = 1.233e-28
Identity = 81/226 (35.84%), Postives = 122/226 (53.98%), Query Frame = 0
Query:   63 HILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLT---IALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSH-LLWISRRKGLS 284
             ILL G+F L F A F+N+V+F      A +H TG V R + ++A G +      + + LCF++G+ V GY      F  GR YG  L+      +   S L+ N V+ +         Y+ ++A GLQN++ + YSG  +RTTH+TG  TDLGI IG +L+ R+  L +  L S  +LGFL GG +G++ + R    AL      + + GL + LL I R K ++
Sbjct:   17 QILLPGAFFLSFTAGFINVVSFLGLFHQAISHTTGNVTRLAASVASGKYAEAQTFVLIVLCFMIGASVSGYITHDSQFKPGRRYGVLLMIESAFIIAAASLLLQNSVYGE---------YLLSMACGLQNAMATSYSGAVVRTTHMTGIITDLGILIGQMLRNRKVPLLRFSLFSILLLGFLSGGSIGQVFFQRMGFFALYAPALWLFIAGLIYFLLRIFRWKAIA 233          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|1149601934|gb|OON09143.1| (hypothetical protein BSLG_01749 [Batrachochytrium salamandrivorans])

HSP 1 Score: 120.553 bits (301), Expect = 1.287e-26
Identity = 70/201 (34.83%), Postives = 116/201 (57.71%), Query Frame = 0
Query:   61 DFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKG-RRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALL 260
            +F+ ++ G   L  NA F+N+V+ +    +A +HVTG V+R + +I    W+   L +S+   F  G+ V G+ V    F LG +YG  L     L+ +AL+V+ + +    V     +  A A GLQN++ + YSG  +RTTH+TG  TD+G  +G   +   + +LW++K+H+  +LGF++GGV G+ A+L   E +LL
Sbjct:    8 EFYTIVAGGVALAANAGFINVVSMAG---VAVSHVTGSVSRVAISIVQHDWETFLLVVSIIASFTFGAFVSGFIVGDNRFKLGANYGLTL----CLESAALLVSFLFLRRELVLGE--WAAAFACGLQNAMVTSYSGLAVRTTHMTGIATDVGNILGQACRADTKAELWRLKVHAPIMLGFILGGVAGQFAWLNLHEYSLL 199          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|1183515385|gb|ORZ38606.1| (putative transmembrane protein, partial [Catenaria anguillulae PL171])

HSP 1 Score: 117.857 bits (294), Expect = 1.597e-26
Identity = 77/222 (34.68%), Postives = 117/222 (52.70%), Query Frame = 0
Query:   61 DFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLL-KGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRK 281
            +F+ ++ G   L   A F+N    +    +A  HVTG + R   ++A   W        + LCF +GS   G T+    F LGRSYG AL    L++ + LV+  V  + GH   +     A A GLQN+  + YSG  LRTTH+TG TTDLGI  G ++ +  R + WK+K+     +G+LVGG++G    L + + A+L    I+ + G+ +L W   R+
Sbjct:    8 EFYTVVIGGSLLSTLAGFINAAVLTGSFHVAVTHVTGSLTRLGSSLATANWPSAGQVSGLTLCFFLGSATAGATIDSTRFQLGRSYGIAL----LVEAAILVLAWVFFNVGH-PAFGSAAAAYACGLQNAFCTGYSGAVLRTTHMTGITTDLGILFGQIIARNPRVESWKIKVFGPLWIGYLVGGILGTWGTLAWGDNAILVPAVILCMAGVFYLTWGPARE 224          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|740329845|ref|WP_038166665.1| (DUF1275 family protein [Verrucomicrobium sp. BvORR106])

HSP 1 Score: 116.316 bits (290), Expect = 4.636e-26
Identity = 76/214 (35.51%), Postives = 118/214 (55.14%), Query Frame = 0
Query:   68 GSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRK 281
            G++ L   A  VN+V F S+   A  H+TG  +  +  IA+G         +V   FL+G+V+ G  +   T  LGR YG AL+  AL+  +A+ + + H D G       Y+ + A GLQN++ + YSG+ +RTTH++G  TDLGI +GH ++G   D  ++++    I GF  GG+ G LA+ R+   AL F  T+    GL + L+  RR+
Sbjct:   12 GAWALAMVAGMVNVVGFLSFEHQAVTHLTGTTSMLAAAIAEGNTSGALHLAAVAGSFLLGAVLSGMIIQDSTLKLGRRYGVALVLEALMLAAAVPLLQAHRDAG------AYLASCACGLQNAMATTYSGSVIRTTHLSGMFTDLGIFLGHAVRGLPVDGRRLRIALLIITGFFCGGIAGALAFHRWSYPALYFPATVTGAAGLGYGLYKLRRE 219          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|655476644|ref|WP_028859454.1| (DUF1275 family protein [Psychrobacter phenylpyruvicus])

HSP 1 Score: 115.546 bits (288), Expect = 7.412e-26
Identity = 74/204 (36.27%), Postives = 109/204 (53.43%), Query Frame = 0
Query:   65 LLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTV 268
            +L G   L F+A  VN++  S +  L+ +HVTG V+  S  IA   W  ++   +  L FL GS++ GY +   +  LGRSYG AL   A L   + ++   HV  G +      + A+A GLQNS+ + YSG  +RTTH+TG T+D+G AIG+ L GR  +   +   +     F  GGV+G   Y     TA+L  V I+ +
Sbjct:    9 ILIGGAVLAFSAGCVNIIALSGFTNLSVSHVTGNVSLFSSAIARFDWSAIFFIGASLLSFLAGSILSGYLIGQRSLKLGRSYGLALFIEASLLFCSFLLFFQHVYWGQL------LAAMACGLQNSMVATYSGAVIRTTHLTGLTSDMGAAIGNWLAGRPVNKMMLGFQTIIWYSFCGGGVVGAFGYFALGYTAMLIPVGIVLI 206          
BLAST of EWM24629.1 vs. NCBI_GenBank
Match: gi|656243716|ref|WP_029190346.1| (DUF1275 family protein [Verrucomicrobium spinosum])

HSP 1 Score: 114.775 bits (286), Expect = 1.827e-25
Identity = 76/213 (35.68%), Postives = 117/213 (54.93%), Query Frame = 0
Query:   68 GSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRR 280
            G++ L   A  VN+V F S+   A  H+TG  +  +  IA+G         +V   FL+G+V+ G  +   T  LGR YG AL+  AL+  +A+ + + H D G       Y+ + A GLQN++ + YSG+ +RTTH++G  TDLGI +GH ++G   D  ++++    I GF  GG+ G LA+ R+   AL F  T+    GL + L+  RR
Sbjct:   12 GAWALAMVAGMVNVVGFLSFEHQAVTHLTGTTSMLAAAIAEGRLSGALHLAAVAGSFLLGAVLSGMIIQDSTLKLGRRYGVALVMEALMLAAAVPLLQAHHDAG------AYLASCACGLQNAMATTYSGSVIRTTHLSGMFTDLGIFLGHAVRGLPVDGRRLRIALLIITGFFCGGITGALAFHRWSYPALYFPATMTGAAGLGYGLYKLRR 218          
The following BLAST results are available for this feature:
BLAST of EWM24629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106149|gb|EWM24629.1|0.000e+0100.00hypothetical protein Naga_100117g18 [Nannochlorops... [more]
gi|585105203|gb|EWM23918.1|4.051e-7245.59Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|585105557|gb|EWM24177.1|1.548e-3148.89Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|1183424201|gb|ORY48517.1|6.630e-2932.72DUF1275-domain-containing protein [Rhizoclosmatium... [more]
gi|488861418|ref|WP_002773657.1|1.233e-2835.84DUF1275 domain-containing protein [Leptonema illin... [more]
gi|1149601934|gb|OON09143.1|1.287e-2634.83hypothetical protein BSLG_01749 [Batrachochytrium ... [more]
gi|1183515385|gb|ORZ38606.1|1.597e-2634.68putative transmembrane protein, partial [Catenaria... [more]
gi|740329845|ref|WP_038166665.1|4.636e-2635.51DUF1275 family protein [Verrucomicrobium sp. BvORR... [more]
gi|655476644|ref|WP_028859454.1|7.412e-2636.27DUF1275 family protein [Psychrobacter phenylpyruvi... [more]
gi|656243716|ref|WP_029190346.1|1.827e-2535.68DUF1275 family protein [Verrucomicrobium spinosum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6055rna6055Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications