rna6053, rna6053 (mRNA) Nannochloropsis gaditana

Overview
Namerna6053
Unique Namerna6053
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationCM002467.1:450863..452286 +

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Properties
Property NameValue
Productgag-pol polyprotein
Orig transcript idgnl|cribi|Naga_100055g1.7339.mrna
Orig protein idgnl|cribi|Naga_100055g1.7339
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:450863..452286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g1gene5847Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6053rna6053-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24655.1cds6038Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6053 ID=rna6053|Name=rna6053|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGGAGGCATCACCGAGGCGCAGGGGAAAGAAGCCGAACGCGCTTCAGGG
ATCGCCCCTCCACCCACTCCCGAGAAATGTCACTGGAAGCACAGGTACAA
GCGTTGCAGTCGGAGAAGAAATGTTTCCAGGCTTTGATCAAGGAGAAACA
GGGCATCATTGCTCGGTTGCAAAAACGCATGGAAGAGCAAGACAAGACCT
TCGTTGCCTCGGCGGGCCTCGGGTCTCGGATGGGCCCATGGCCCGGCGGC
TTCGCAGATATTGGAGAGGGGAGTGGCGCCAGAGAGGAGAGGCTTGCAAG
GGCTGCCACAGAGGTCGTGGCGGAAGTAAGCCCAAGGGGAGGGCGGGAAA
GTAG
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protein sequence of rna6053

>rna6053-protein ID=rna6053-protein|Name=rna6053|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEF
GYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVY
VKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHP
SSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSM
KDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPM
EGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGS
NEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNR
RSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALY
IRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVRKTTGLA
STSVFGCL
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mRNA from alignment at CM002467.1:450863..452286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6053 ID=rna6053|Name=rna6053|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp|location=Sequence derived from alignment at CM002467.1:450863..452286+ (Nannochloropsis gaditana)
ATGAAAAACGGTACATGGGAATTAACCCCTTTACCGAAGGGAGAACGATG
CATCTCAAGTGGCTGGGTGGAAACTGATAAGCGAGATCAGAATGGTGTTA
ttgtgaggagaaaggcaagatTTATTGCCAAAGGTTATAGTCAAGAATTT
GGCTATGACTACCTCCACACTTATGCACCTGTTGCATCGATAACCACGAT
TCGTTTGGTATTAGCCCTAGCATGCATATTGGATCTTGAGCTGGATAACA
TGGATGTTGAACCAGCTTACCTTCAATCAGACCTTGAGGAAAAGGTATAT
GTCAAACAACCACCTGGATATGAGCAATATGGATCAAATGGAGAGGAGCT
AGTTTGTCGATTACGTAAGTCGCTATACGGACTTAAACAATCTGGACGAA
ACTGGCATAAGAAGATTGATGGATGGTTCCGAGGATATGGtttccatcct
tcttctGCTGATCCATGCTTATACGTGAAGTTTGGATCTAGTGGTGAAAT
ATTGGTTATCGTCTTATATGTGGACGATTTAATTATCACTAGTAACTCCA
GGGAAATGGTAGGTAAATTCAAGCACGCTATTTCGAGGGAATTTAGCATG
AAAGACTTGAAGGAGCTTGATTGGATACTTGGTATGGCAATCAAACGTGA
TCGAGGAAAGAGAGTTATGGAAATCTCTCAAACAGCCTATATCGATATGA
TGCTGGCGAAATTTAGAATGGCTGACTGCAAACCGGTCCTAACGCCCATG
GAAGGGACTCTGACAAAAATGGATGGCAAGGACGTCAAACCAGATAATGA
ATACATGAAGCTAGTGGGTAGCTTATTGTATGCAGCACTGGTCACGCGTC
CAGACATCGCATTTGCGGTGCAGTCGTTGGGGAAACACTTGCAAGGATCT
AATGAGGAGCATTGGATCGCTGCAAAGCGTGTATTGAGATACCTGAAGGG
TACTCGTGAGGTTGGACTCAAATACACAGGTAATTCTACGGGATCGTTTA
CCCTGGTGGGATACGCGGACGCGGATTACGCTGGCGATAAAGATAACAGA
CGTTCAACGTCTGGTTATGCTTTTACATTGAGTCATGGAGAAATTGTCAA
TACGATTGATTGGCGAGCCAAGCAACAAGAGGTGGTGGCCCTGTCGTCTG
CTGAATCGGAGCTAATATCTGCTTGTTCAGCGACACAAAGTGCACTTTAT
ATTCGTCAACTACTTATGGACCTCGGATTAAAGCAAGATGAGCCTACTCT
GATTATGGAAGATAATCAAGCTTGCATTGCGATGGGGAATAATCCGATTA
CGcataagaggacgaagcacaTAGATGTACGTTTTCAGTAAAGTATTCAa
gaataaacaaacaaaacaATCCCTAAGGGAaaacaacaggactggcgtcg
accagtgtctttggttgtctttga
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Coding sequence (CDS) from alignment at CM002467.1:450863..452286+

>rna6053 ID=rna6053|Name=rna6053|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at CM002467.1:450863..452286+ (Nannochloropsis gaditana)
ATGAAAAACGGTACATGGGAATTAACCCCTTTACCGAAGGGAGAACGATG
CATCTCAAGTGGCTGGGTGGAAACTGATAAGCGAGATCAGAATGGTGTTA
ttgtgaggagaaaggcaagatTTATTGCCAAAGGTTATAGTCAAGAATTT
GGCTATGACTACCTCCACACTTATGCACCTGTTGCATCGATAACCACGAT
TCGTTTGGTATTAGCCCTAGCATGCATATTGGATCTTGAGCTGGATAACA
TGGATGTTGAACCAGCTTACCTTCAATCAGACCTTGAGGAAAAGGTATAT
GTCAAACAACCACCTGGATATGAGCAATATGGATCAAATGGAGAGGAGCT
AGTTTGTCGATTACGTAAGTCGCTATACGGACTTAAACAATCTGGACGAA
ACTGGCATAAGAAGATTGATGGATGGTTCCGAGGATATGGtttccatcct
tcttctGCTGATCCATGCTTATACGTGAAGTTTGGATCTAGTGGTGAAAT
ATTGGTTATCGTCTTATATGTGGACGATTTAATTATCACTAGTAACTCCA
GGGAAATGGTAGGTAAATTCAAGCACGCTATTTCGAGGGAATTTAGCATG
AAAGACTTGAAGGAGCTTGATTGGATACTTGGTATGGCAATCAAACGTGA
TCGAGGAAAGAGAGTTATGGAAATCTCTCAAACAGCCTATATCGATATGA
TGCTGGCGAAATTTAGAATGGCTGACTGCAAACCGGTCCTAACGCCCATG
GAAGGGACTCTGACAAAAATGGATGGCAAGGACGTCAAACCAGATAATGA
ATACATGAAGCTAGTGGGTAGCTTATTGTATGCAGCACTGGTCACGCGTC
CAGACATCGCATTTGCGGTGCAGTCGTTGGGGAAACACTTGCAAGGATCT
AATGAGGAGCATTGGATCGCTGCAAAGCGTGTATTGAGATACCTGAAGGG
TACTCGTGAGGTTGGACTCAAATACACAGGTAATTCTACGGGATCGTTTA
CCCTGGTGGGATACGCGGACGCGGATTACGCTGGCGATAAAGATAACAGA
CGTTCAACGTCTGGTTATGCTTTTACATTGAGTCATGGAGAAATTGTCAA
TACGATTGATTGGCGAGCCAAGCAACAAGAGGTGGTGGCCCTGTCGTCTG
CTGAATCGGAGCTAATATCTGCTTGTTCAGCGACACAAAGTGCACTTTAT
ATTCGTCAACTACTTATGGACCTCGGATTAAAGCAAGATGAGCCTACTCT
GATTATGGAAGATAATCAAGCTTGCATTGCGATGGGGAATAATCCGATTA
CGcataagaggacgaagcacaTAGATGTACGGAaaacaacaggactggcg
tcgaccagtgtctttggttgtctttgaATGAAAAACGGTACATGGGAATT
AACCCCTTTACCGAAGGGAGAACGATGCATCTCAAGTGGCTGGGTGGAAA
CTGATAAGCGAGATCAGAATGGTGTTAttgtgaggagaaaggcaagatTT
ATTGCCAAAGGTTATAGTCAAGAATTTGGCTATGACTACCTCCACACTTA
TGCACCTGTTGCATCGATAACCACGATTCGTTTGGTATTAGCCCTAGCAT
GCATATTGGATCTTGAGCTGGATAACATGGATGTTGAACCAGCTTACCTT
CAATCAGACCTTGAGGAAAAGGTATATGTCAAACAACCACCTGGATATGA
GCAATATGGATCAAATGGAGAGGAGCTAGTTTGTCGATTACGTAAGTCGC
TATACGGACTTAAACAATCTGGACGAAACTGGCATAAGAAGATTGATGGA
TGGTTCCGAGGATATGGtttccatccttcttctGCTGATCCATGCTTATA
CGTGAAGTTTGGATCTAGTGGTGAAATATTGGTTATCGTCTTATATGTGG
ACGATTTAATTATCACTAGTAACTCCAGGGAAATGGTAGGTAAATTCAAG
CACGCTATTTCGAGGGAATTTAGCATGAAAGACTTGAAGGAGCTTGATTG
GATACTTGGTATGGCAATCAAACGTGATCGAGGAAAGAGAGTTATGGAAA
TCTCTCAAACAGCCTATATCGATATGATGCTGGCGAAATTTAGAATGGCT
GACTGCAAACCGGTCCTAACGCCCATGGAAGGGACTCTGACAAAAATGGA
TGGCAAGGACGTCAAACCAGATAATGAATACATGAAGCTAGTGGGTAGCT
TATTGTATGCAGCACTGGTCACGCGTCCAGACATCGCATTTGCGGTGCAG
TCGTTGGGGAAACACTTGCAAGGATCTAATGAGGAGCATTGGATCGCTGC
AAAGCGTGTATTGAGATACCTGAAGGGTACTCGTGAGGTTGGACTCAAAT
ACACAGGTAATTCTACGGGATCGTTTACCCTGGTGGGATACGCGGACGCG
GATTACGCTGGCGATAAAGATAACAGACGTTCAACGTCTGGTTATGCTTT
TACATTGAGTCATGGAGAAATTGTCAATACGATTGATTGGCGAGCCAAGC
AACAAGAGGTGGTGGCCCTGTCGTCTGCTGAATCGGAGCTAATATCTGCT
TGTTCAGCGACACAAAGTGCACTTTATATTCGTCAACTACTTATGGACCT
CGGATTAAAGCAAGATGAGCCTACTCTGATTATGGAAGATAATCAAGCTT
GCATTGCGATGGGGAATAATCCGATTACGcataagaggacgaagcacaTA
GATGTACGGAaaacaacaggactggcgtcgaccagtgtctttggttgtct
ttga
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Synonyms
Publications