EWM24655.1, cds6038 (CDS) Nannochloropsis gaditana

Overview
NameEWM24655.1
Unique Namecds6038
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:450863..452192 +
Alignment locationCM002467.1:452240..452286 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24655.1
Productgag-pol polyprotein
Orig transcript idgnl|cribi|Naga_100055g1.7339.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:450863..452192 +
CM002467.1supercontigCM002467.1:452240..452286 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
Homology
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585106177|gb|EWM24655.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 954.51 bits (2466), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVRKTTGLASTSVFGCL 458
            MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVRKTTGLASTSVFGCL
Sbjct:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVRKTTGLASTSVFGCL 458          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585100661|gb|EWM20779.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 411/444 (92.57%), Postives = 431/444 (97.07%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELT LPKGERCISSGWV++DKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRL+LA+ACILDLELDNMDVE AYLQSDLEEKVYVKQP GYEQYG NGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE+LVIVLYVDDLIITSNSREMV KFK AISREFSMKDLKELDWILGMAIKR+R KRVMEISQTAYIDM+L KF MADC+PVLTPMEGTLTKMDGKD KPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTR+VG++YTGN+TGSFTLVG+ADADYAGDKDNRRSTSGYAFTLSHG+ +NTIDW+AKQQEVVALSSAESELISACSATQSA+YIRQLL DLG KQDEPT+I+EDNQACIAMGNNPITHK+TKHIDVR
Sbjct:  230 MKNGTWELTTLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIVEDNQACIAMGNNPITHKKTKHIDVR 673          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585099624|gb|EWM20200.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 410/444 (92.34%), Postives = 425/444 (95.72%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELT LPKGERCISSGWVETDKRDQNG+IVRRKARFIAKGYSQE GYDYLHTYAPVASITTIRL+LA+ACILDLELDNMDVE AYLQSDLEEKVYVKQPPGYEQYGS+GEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSS EILVIVLYVDDLIITSNSR M  KFK  ISREFSMKDLKELDWILGMAIKR+R KR+MEISQT YIDMML KF M DCKPVLTPMEGTLTKMDGKDVKPD+EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGY FTLSHG+ +NTIDW+AKQQ+VVALSSAESELISACSATQ+A+YIRQLLMDLG KQDE T+IMEDNQACIA+ NNPITHKRTKHIDVR
Sbjct:  190 MKNGTWELTTLPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQELGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPPGYEQYGSDGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSSEILVIVLYVDDLIITSNSRAMTDKFKQDISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDDEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDINTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEATVIMEDNQACIALSNNPITHKRTKHIDVR 633          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585100770|gb|EWM20840.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 406/444 (91.44%), Postives = 426/444 (95.95%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQE+GYDYL TYAPVAS+TTIRLVLALACILDLELDNMDV+ AYLQSDLEEKVY+KQP GYE+YG NG ELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE+LV+VLYVDDLII SNSR M  KFK AISREFSMKDLKELDWILGMAIKR+R KR+MEISQT YIDMML KF M DCKPVLTPMEGTLTKMDGKDVKPD+EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTR+VG++YTGN+TGSFTLVG+ADADYAGDKDNRRSTSGYAFTLSHG+ +NTIDW+AKQQEVVALSSAESELISACSATQSA+YIRQLL DLG KQDEPT+IMEDNQACIAMGNNPITHKRTKHIDVR
Sbjct:  519 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVR 962          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585099867|gb|EWM20346.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 850.507 bits (2196), Expect = 0.000e+0
Identity = 406/444 (91.44%), Postives = 419/444 (94.37%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELTPLPKGERCISSGWVETDKRDQ GVIVRRKARFIAKGYSQEFGYDYLHTYAPVAS+TTIRLVLALACILDLELDNMDV+ AYLQSDLEEKVY+KQPPGYE+YG NG ELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYG HPS ADPCLYVKF SSGEILVIVLYVDDLII SNSR M  KFK  ISREFSMKDLKELDWILGM IKR+R  R MEISQT YI MML KF MADCK VLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSN+EHWIAAKRVLRYLKGTR+VGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGY FTLSHG+ VNTIDW+AKQQ+VVALSSAESELISACSATQ+A+YIRQLLMDLG KQDEPT+IMEDNQACIAMGNNPITHKRTKHIDVR
Sbjct:  221 MKNGTWELTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVR 664          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585108508|gb|EWM26459.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 836.254 bits (2159), Expect = 0.000e+0
Identity = 400/444 (90.09%), Postives = 418/444 (94.14%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELTPLPKGERCISSGWV++DKRDQNG+IVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRL+LALACILDLELDNMDVE AYLQSDLEEKVYVKQP GYEQ+G +GEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMV KFK AISREFSMKDLKELDWILGMAIKRDR KR MEISQTAYIDM+L KF MADC+PVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTR+VG++YTGNSTGSFTLVG+ADADYAGDKDNRRSTSGY FTLSHG+ VNTIDW+AKQQ+VVALSSAES+          A+YIRQLL DLG KQDEPT+IMEDNQACIAM NNPIT  RTKHIDVR
Sbjct:  337 MKNGTWELTPLPKGERCISSGWVDSDKRDQNGIIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILALACILDLELDNMDVETAYLQSDLEEKVYVKQPTGYEQHGPDGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRDREKRAMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNSTGSFTLVGFADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESD----------AVYIRQLLTDLGFKQDEPTIIMEDNQACIAMSNNPITQSRTKHIDVR 770          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585100512|gb|EWM20690.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 829.321 bits (2141), Expect = 0.000e+0
Identity = 402/444 (90.54%), Postives = 413/444 (93.02%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELTPLPKGERCISSGWV++DKRDQNGVIVRRKARFIAKGYSQEFGYDYL+TYAPVASITTIRL+LA+ACILDLELDNMDVE AYLQSDLEEKVYVKQP GYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMV KFKHAISREFSMKDLKELDWILGMAIKRDR KRVMEISQTAYIDMMLAKF MADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRY K                   VG+ADADYAGDKDNRRSTSGY FTLSHG+ VNTIDW+AKQQEVVALSSAESELISACSATQSA+YIRQLL DLG KQDE T+IME+NQACIAM NNPITHKRTKHIDVR
Sbjct:  441 MKNGTWELTPLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYQK-------------------VGFADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEATVIMENNQACIAMSNNPITHKRTKHIDVR 865          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585099602|gb|EWM20187.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 384/444 (86.49%), Postives = 393/444 (88.51%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MKNGTWELTPLPKGERCISSGWVE DKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDV+ AYLQSDLEEKVY+KQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFH SS DPCLYVKFGSSGE+                 EMV  FKHAISREFSMKDLKEL WILGMAIKRDR KRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFA                    RVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGY FTLSHG+ +NTIDW+AKQQ+VVALSSAESELISACSATQSA+YIRQLLMDLG KQDEPT+IMEDNQACIAM NNPI  KRTKHIDVR
Sbjct:  259 MKNGTWELTPLPKGERCISSGWVEADKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEM-----------------EMVNSFKHAISREFSMKDLKELHWILGMAIKRDREKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFA--------------------RVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDINTIDWKAKQQDVVALSSAESELISACSATQSAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMSNNPIIQKRTKHIDVR 665          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585100658|gb|EWM20777.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 300/361 (83.10%), Postives = 314/361 (86.98%), Query Frame = 0
Query:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLLMDLGLKQDEPTLIMEDNQACIAMGNNPITHKRTKHIDVR 444
            MDV+ AYLQSDLEEK+YVKQPPGYEQYG NGEELVC L KSLYGLKQSGRNWHKKI GWFRGYGFH SSADPCLYVKF SSGEILVIVLYVDDLII  NSR M+  FK AIS+EFSMKDLKELDWILGMAIKR+R KR+ME+S TAY+DMMLAKFRMADCKPVLTPMEGTLTKM+GK +KPD+EYM LVGSLLYAAL TRPD AFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTR                  YADADYAGDKDNRRSTSGY FTLSHG  VNTIDW+AKQQ VVALSSAESELISACSATQSA+YIRQLLMDLG KQ EPT+IMEDNQACIAM NN I  KRTKHIDVR
Sbjct:    1 MDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGRNWHKKIGGWFRGYGFHSSSADPCLYVKFESSGEILVIVLYVDDLIIAGNSRNMINDFKLAISKEFSMKDLKELDWILGMAIKRNREKRIMEVSHTAYVDMMLAKFRMADCKPVLTPMEGTLTKMNGKGIKPDSEYMTLVGSLLYAALATRPDDAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTR------------------YADADYAGDKDNRRSTSGYTFTLSHGNDVNTIDWKAKQQYVVALSSAESELISACSATQSAVYIRQLLMDLGFKQGEPTVIMEDNQACIAMSNNQIIQKRTKHIDVR 343          
BLAST of EWM24655.1 vs. NCBI_GenBank
Match: gi|585099374|gb|EWM20071.1| (gag-pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 260/293 (88.74%), Postives = 277/293 (94.54%), Query Frame = 0
Query:    1 MKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSL 293
            M+NGTW+LTPLPKGERCISSGWVETDKRDQNG+IVRRKARFIAKGYSQE+GYDYL+TYAPVASITTIRL+LA+ACILDLELDNMDV+ AYLQSDLEEK+YVKQPPGYEQ G NGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFH SSADPCLYVKFGSSGE+LVIVLYVDDLII  NSR+MV  FK AIS+E SMKDLKELDWILGMAIKR+R KR MEISQTAYIDMMLAKF+MADCKPVLTPMEG LTKM+G+  KPD EYMKLVGSLLYAALVTRPDIAFAVQS+
Sbjct:    1 MRNGTWKLTPLPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDREYMKLVGSLLYAALVTRPDIAFAVQSV 293          
The following BLAST results are available for this feature:
BLAST of EWM24655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106177|gb|EWM24655.1|0.000e+0100.00gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585100661|gb|EWM20779.1|0.000e+092.57gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585099624|gb|EWM20200.1|0.000e+092.34gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585100770|gb|EWM20840.1|0.000e+091.44gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585099867|gb|EWM20346.1|0.000e+091.44gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585108508|gb|EWM26459.1|0.000e+090.09gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585100512|gb|EWM20690.1|0.000e+090.54gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585099602|gb|EWM20187.1|0.000e+086.49gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585100658|gb|EWM20777.1|0.000e+083.10gag-pol polyprotein [Nannochloropsis gaditana][more]
gi|585099374|gb|EWM20071.1|0.000e+088.74gag-pol polyprotein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6053rna6053Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications