rna6052, rna6052 (mRNA) Nannochloropsis gaditana

Overview
Namerna6052
Unique Namerna6052
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length234
Alignment locationCM002467.1:449877..450230 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g2.7355.mrna
Orig protein idgnl|cribi|Naga_100055g2.7355
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:449877..450230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g2gene5846Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6052rna6052-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24671.1cds6037Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6052 ID=rna6052|Name=rna6052|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGGAGGTGGCTCTCTTTTCGACCCGGCTGGACACTACATCGAAAAATGC
GTCCTCACGCACACAGCGTAGGAACATCGTCCATGGCAACAACCATCGGC
AGGACTTTCCCCACCTTGTTATCAACAGAGACTCACCGGCACACGCGCAA
AACCTTGTGGAAAAGAGCCGGGGCTTAGAAGGTAATACGGAGGAAGCGAC
CACGACGGACGCAGAGCCGTCCTTGGCACAGTAA
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protein sequence of rna6052

>rna6052-protein ID=rna6052-protein|Name=rna6052|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MEASPRRRGKKPNALQGSPLHPLPRNVTGSTGTSVAVGEEMFPGFDQGET
GHHCSVAKTHGRARQDLRCLGGPRVSDGPMARRLRRYWRGEWRQRGEACK
GCHRGRGGSKPKGRAGK
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mRNA from alignment at CM002467.1:449877..450230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6052 ID=rna6052|Name=rna6052|organism=Nannochloropsis gaditana|type=mRNA|length=354bp|location=Sequence derived from alignment at CM002467.1:449877..450230+ (Nannochloropsis gaditana)
atggaggcatCACCGAGGCGCAGGGGAAAGAAGCCGAACGCGCTTCAGGG
AtcgcccctccacccactCCCGAGAAATGTCACTGGAAGCACAGGTACAA
GCGTTGCAGTCGGAGAAGAAATGTTTCCAGGCTTTGATCAAGGAGAAACA
GGGCATCATTGCTCGGTTGCAAAAACGCATGGAAGAGCAAGACAAGACCT
TCGTTGCCTCGGCGGGCCTCGGGTCTCGGATGGGCCCATGGCCCGGCGGC
TTCGCAGATATTGGAGAGGGGAGTGGCGCCAGAGAGGAGAGGCTTGCAAG
GGCTGCCACAGAGGTCGTGGCGGAAGTAAGcccaaggggagggcgggaaa
gtag
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Coding sequence (CDS) from alignment at CM002467.1:449877..450230+

>rna6052 ID=rna6052|Name=rna6052|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002467.1:449877..450230+ (Nannochloropsis gaditana)
atggaggcatCACCGAGGCGCAGGGGAAAGAAGCCGAACGCGCTTCAGGG
AtcgcccctccacccactCCCGAGAAATGTCACTGGAAGCACAGGTACAA
GCGTTGCAGTCGGAGAAGAAATGTTTCCAGGCTTTGATCAAGGAGAAACA
GGGCATCATTGCTCGGTTGCAAAAACGCATGGAAGAGCAAGACAAGACCT
TCGTTGCCTCGGCGGGCCTCGGGTCTCGGATGGGCCCATGGCCCGGCGGC
TTCGCAGATATTGGAGAGGGGAGTGGCGCCAGAGAGGAGAGGCTTGCAAG
GGCTGCCACAGAGGTCGTGGCGGAAGTAAGcccaaggggagggcgggaaa
gtag
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Synonyms
Publications