rna6051, rna6051 (mRNA) Nannochloropsis gaditana

Overview
Namerna6051
Unique Namerna6051
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2237
Alignment locationCM002467.1:449166..449774 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g3.7337.mrna
Orig protein idgnl|cribi|Naga_100055g3.7337
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:449166..449774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g3gene5845Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6051rna6051-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24653.1cds6036Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6051 ID=rna6051|Name=rna6051|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp
TGAATAGGAATAGCGCGACAGCATGGGAAACGATGTTAGCTCCAGCATCA
CAAGCATACGATCAGAGGAGGACAGACGACAGGCGATTCGACGCATGGAT
GGGGCCCTTCAAAAGAAATTGGGCAAGGGGGTCGCACACAATTTGAAGAT
TATTATCAGAGGAGAACGCGGCAGCGGTAAAAGTGCTTTGCTCAGTAGAC
TTAAAGGTCAACCTTTTACATCTTCAGTATATGAGCCAACGCCTGAGATC
GAGACGGCGACCATTAATTGGAGCGCCAAAGAAGATGGTGCTGTGGTCAA
GGTAGAGATTTGGGACGTCGTTGACAAGGGGTTGGGCCGACGCGGTAGTT
TGATCGGAAATAATGTGAGGGGGACGGGCACTGTCGCGCACGACGGCGGC
GGTGACCCTGATGCTCTGGCAGGGCTTCCGCTCGACGTACCAGTGCACGC
CCAGCGCGGGCACCATGCAGGTGCTTCTGGGAGTCATGCATTTGGTGTAT
TGGATGCCACCATTGTAGACGTTTGGAAAGGGTCGCATGGAGGTATATTC
ATGATGAATCCTTTCTCCTCGACGGCGCTGCAATACGTCCAAAAGCAACT
CGCCGAGGTACCACGGGGCATTCCTGTCCTTTTGCTGGCGAACTTTCGAG
ATTTACTTCTTGACGACACGCAGGAGGGAAGGAAGCTTGAAGAGGACACC
AAACATGAGGGTGAATCGGTCGAAGCTGCTCCCGTTCGGCCTCGTCGAGT
ACATTTCAATTTGCGGGACCTGCAGGAAGTGAGCGCGGAGCAGACAGCTC
AGGGGAGGACTTGCCATGCTTTCGCTTGCTCCATGCAAAATTGTTTCGGT
TTAGCTCAACTCTATGCCTATCTCAACATTCCGTTTCTGGCTATGAAAGG
TGACGTGCTAGAGCGTCAACTGAGCGAGACTCGGCGGGTGCTCTCGGCCA
TGACGCTGGAAGTGGAGGAAGGGATCGACCGGGGGTCTTGGGGGGACTAT
GTGGCCGCTTTACGGGCCAAGGAAGAAGACCACGCCCCCGTGATCGAGAA
AAGTAACAAAGAAGCGCGGAAGCCGCAGAGCGTCAGGGTCCTCCCAGATA
CCGTCGTCCCAGGTACCTCGAGGGAAAACACTGGAGTGACTCGCAGCAAA
GGAGAGGGGCACAAGCCGGTCGGCCACGTCTCCTCGCCGGCGGCGGCGGT
GGCGTCAAAGCACCCCAGGCCGATCCAGGGAGACCCGCAAGCGTGGCCTG
GTGTTACTTGCAGATCGACGCAAGGGCCTCAGCGGTCCTCCGTGCAAGAA
AGTGGACTAGTGGACGTAGAGGACTTCAAATTTCAGCCGAGGGAGGGGAA
TGAACAGAATGAGCTGACGCTCTTTTTGGCGGAAGCTGAGGGGGGATCTA
CCGAGGACGATATGAACGAGGAGCGGAGGCGACAAAGCCTGAGGTCTTGC
TTGAAGCCAGGGTCGCTGGCGTCATTGAGCGAGGCACAGCGCCGGGCGAC
GGGTGTGGTCGGATCGGGAGACGTTAGGGAAGGAGATGAGGGAGAGGAGG
ACGAGGACCTGCCTGCCGAGGAGGGCGAGCAGCGCTACGTAGGGCTCAGG
CCGGTGAACTTGCCCGCTAAGGATATATCACTTTCTGAGCGTGGCTGTAA
TGCTGACAGAGGGAAGGGCTCTCTGTCCGATGACCAGAAAAAAGGGCTTG
TGGGGCCTTTGTCGGTGCATGAGGATGGGTTGGGGGTCTGGATGACAGCG
CAGGGAAAGGAGAGCGACGGAAAAGACGATATAGATATTCCCGCAGGGCT
TCCACTACCACTCCACTCTCTCGACCTCTCCCAGGCAGACTCATCTGAAG
GGGAGGATTGTGACCAAGGAATTTTTAACCGTAAAATTCAGCAACCTGGC
GACTCAAGTCTACAGAGGACTGGAAATAACATGGAAGGATCCTTGTCTTC
ATTTTCAAACTCTTCAACTACTGCAGCTCCTCTTCCTCTAGAAGGCCTGG
CCGACAAGACTGATTTTGTCCTCAGTAAAGCGGCTCGAGCGGCCATCGCC
GCCACAATGGAGGAATTGAACGGTCGATCGCCCGGGGAAGATTTAGCTAA
TGGGGACTTATCAAGACGAGAACAGCGGTCTGCCGGGAAAATGAAGACGA
AAGCCTCAGAGGGAAAACGGAAAAGGAGGAATAGCTCGGGAAATGGGGGA
CAATCTGTGTGATACGAAAGAAAGCCGAAAATCATGT
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protein sequence of rna6051

>rna6051-protein ID=rna6051-protein|Name=rna6051|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MEVALFSTRLDTTSKNASSRTQRRNIVHGNNHRQDFPHLVINRDSPAHAQ
NLVEKSRGLEGNTEEATTTDAEPSLAQ
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mRNA from alignment at CM002467.1:449166..449774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6051 ID=rna6051|Name=rna6051|organism=Nannochloropsis gaditana|type=mRNA|length=609bp|location=Sequence derived from alignment at CM002467.1:449166..449774+ (Nannochloropsis gaditana)
atgggtaTCACTGTAGAAAGCCCGCCCCCCCAAAGCCTTAATTCGTGTCC
AACCTAGTGGAATGAAGTGTCAGAAAGCGAGTTTGCCTTGACCGTGGGCA
TGTTgtgccatttcctccgtgcACGCGGCCTGGACTGAGACGTCGTGGGT
GTTTGCATGGCTTTATTTCTTTAACTCCTCAACGAAAGAGGTGGCTCTCT
TTTCGACCCGGCTGGACACTACATCGAAAAATGCGTCCTCACGCACACAG
TGCGTACACACGTGCAACATTTTCATCTGTGGAAGTATCATAGAGGACGT
GATGACTCCTAATCGTGCCTTAGTATTGGTCTTTGGTGGGCAGATATGGT
TGTAGGAAGGACCacgttttttggggggggacCTGCGACACGGTAGCCTA
TTCACAGTGTCATAATATATCCTTCCTGATTATGCCACAGGCGTAGGAAC
ATCGTCCATGGCAACAACCATCGGCAGGactttccccaccttgtTATCAA
CAGAGACTCACCGGCACACGCGCAAAACCTTGTGGAAAAGAGCCGGGGCT
TAGAAGGTAATACGGAGGAAGCGACCACGACGGACGCAGAGCCGTCCTTG
GCACAGTAA
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Coding sequence (CDS) from alignment at CM002467.1:449166..449774+

>rna6051 ID=rna6051|Name=rna6051|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at CM002467.1:449166..449774+ (Nannochloropsis gaditana)
atggAGGTGGCTCTCTTTTCGACCCGGCTGGACACTACATCGAAAAATGC
GTCCTCACGCACACAGCGTAGGAACATCGTCCATGGCAACAACCATCGGC
AGGactttccccaccttgtTATCAACAGAGACTCACCGGCACACGCGCAA
AACCTTGTGGAAAAGAGCCGGGGCTTAGAAGGTAATACGGAGGAAGCGAC
CACGACGGACGCAGAGCCGTCCTTGGCACAGTAAatggAGGTGGCTCTCT
TTTCGACCCGGCTGGACACTACATCGAAAAATGCGTCCTCACGCACACAG
CGTAGGAACATCGTCCATGGCAACAACCATCGGCAGGactttccccacct
tgtTATCAACAGAGACTCACCGGCACACGCGCAAAACCTTGTGGAAAAGA
GCCGGGGCTTAGAAGGTAATACGGAGGAAGCGACCACGACGGACGCAGAG
CCGTCCTTGGCACAGTAAatggAGGTGGCTCTCTTTTCGACCCGGCTGGA
CACTACATCGAAAAATGCGTCCTCACGCACACAGCGTAGGAACATCGTCC
ATGGCAACAACCATCGGCAGGactttccccaccttgtTATCAACAGAGAC
TCACCGGCACACGCGCAAAACCTTGTGGAAAAGAGCCGGGGCTTAGAAGG
TAATACGGAGGAAGCGACCACGACGGACGCAGAGCCGTCCTTGGCACAGT
AA
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Synonyms
Publications