EWM24653.1, cds6036 (CDS) Nannochloropsis gaditana

Overview
NameEWM24653.1
Unique Namecds6036
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:449166..449169 +
Alignment locationCM002467.1:449354..449414 +
Alignment locationCM002467.1:449606..449774 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24653.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g3.7337.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:449166..449169 +
CM002467.1supercontigCM002467.1:449354..449414 +
CM002467.1supercontigCM002467.1:449606..449774 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24653.1 vs. NCBI_GenBank
Match: gi|585106175|gb|EWM24653.1| (hypothetical protein Naga_100055g3 [Nannochloropsis gaditana])

HSP 1 Score: 158.688 bits (400), Expect = 2.546e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 MEVALFSTRLDTTSKNASSRTQRRNIVHGNNHRQDFPHLVINRDSPAHAQNLVEKSRGLEGNTEEATTTDAEPSLAQ 77
            MEVALFSTRLDTTSKNASSRTQRRNIVHGNNHRQDFPHLVINRDSPAHAQNLVEKSRGLEGNTEEATTTDAEPSLAQ
Sbjct:    1 MEVALFSTRLDTTSKNASSRTQRRNIVHGNNHRQDFPHLVINRDSPAHAQNLVEKSRGLEGNTEEATTTDAEPSLAQ 77          
BLAST of EWM24653.1 vs. NCBI_GenBank
Match: gi|585112780|gb|EWM30129.1| (hypothetical protein Naga_101103g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.0485 bits (227), Expect = 4.915e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0
Query:   32 HRQDFPHLVINRDSPAHAQNLVEKSRGLEGNTEEATTTDAEPSLAQ 77
            HRQDFPHLVINRDSPAHA+N+VEKSRGLEGNTEEA+TTDAEPS AQ
Sbjct:    4 HRQDFPHLVINRDSPAHARNIVEKSRGLEGNTEEASTTDAEPSPAQ 49          
The following BLAST results are available for this feature:
BLAST of EWM24653.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106175|gb|EWM24653.1|2.546e-49100.00hypothetical protein Naga_100055g3 [Nannochloropsi... [more]
gi|585112780|gb|EWM30129.1|4.915e-2091.30hypothetical protein Naga_101103g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6051rna6051Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications