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Properties
| Property Name | Value |
|---|
| Product | peptidase u34 dipeptidase |
| Orig transcript id | gnl|cribi|Naga_100055g6.7346.mrna |
| Orig protein id | gnl|cribi|Naga_100055g6.7346 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:441126..445506 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6048 ID=rna6048|Name=rna6048|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGTGGTCAGGTAAGGTGTCCATTCCTGTGTACGAAATCCACGGCTTAGT
GGGCTCACAGATGTATGGAAAACATCGCAGCTCGCTCCATGAGGTGAAAA
TTGACATACCTGACGGCGGCGGACAGCAAAAAGAAAACCTGAGTTGTGTA
TCAGGGCTTTACCTTCCGATGCCAAAATTTCTGATCCTTGAAGCCGAGGA
AGTCTTTTTAGGATGTTGA back to topprotein sequence of rna6048 >rna6048-protein ID=rna6048-protein|Name=rna6048|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MTDLVAEYGYASEGETFTVADPEEVWVLEMIGKGEHGKGAVWAAKRIPDG
YISAHANQARIQTLESEGIDQVLFSDDVIDFARRIGRFPTEAQDDLFSFS
DVYNPITYLAARACEGRVWDFFRRATAADQSIMGPYLDYVTGRNLTKRMP
LYIKPVAPLSTSDIVDAMRSHYENTPLAFDQDVGAEAFGLPYRWRPLTWQ
LDDGRTFFNERAAATQQTGFSLLAQLRRGVPDPIKALQFFAVDDTDSSVM
IPVYGGMALVPPSYGPGSISVFEPEKAFWAFNMVANFAYARYAIINPDVR
RRQGALEAQQWKLAVEIDEEFTRLWGEDQIKAVAMMTTACVSNAESLVLE
WRRFYGELFVKFMDGNIKTKDNPEQLLPDVEQPGYRLEWRERIVRETGER
YRFPADMFTSQQ back to topmRNA from alignment at CM002467.1:441126..445506+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6048 ID=rna6048|Name=rna6048|organism=Nannochloropsis gaditana|type=mRNA|length=4381bp|location=Sequence derived from alignment at CM002467.1:441126..445506+ (Nannochloropsis gaditana)
GCGATTGACTCCCTGCCTCTTGGTCGGTATATGCGTGCATAAACACGAAA
TAATTACGAAATGTTTCCAAACTTTATCACTTTTCACAGAGCAACCACTT
TGTTAATCCCTCGGTCTCGTACCATGCCTCTGCTCCGCTTTGGGGGGCTA
TTCACGCTTACTTTATTGTGTGTTTTATCGATGGGCGAGAGCTGCACGTG
CTTCATTGTCACACCGGGAGCTTCTCAAGTTGGGGCGATGCAAGTCACGT
ACGCAGCTGATTCGCACACACTCTACGGATATTTACAGGTAACGGTATCG
GCATATTAGGATAATCTCGAAACGTTTTGACACTAATTGCCGCATTCTTG
GTACAGTTCTGGCCCCGAAGCCGTCATTCAGATGGAGAGGTAATAAATGT
GACAGATTGGGACTCGGGGCTGTTCCGGGGCGTCATCAGGCAGGTGTGTT
GCCCATCCCGACATGAGCTCCCTGTTTTCAATATCGGGACTGGATCCCCT
TAGACCTCACTTTTGCTTTCGATGCCTTTGAATTGTTATTATTTTTTCCA
TCGAACTGCTATAGGTGCCTTTGACATACAACGTTGTGGGAAACGTAAAC
GAATTCGGATTGTGTATCACGGAATCAACATGGGGCGGACTGGCTGAACT
CGCACATCAACCCGGAGCCATTCTGGATTACGGCTCGCTTATATACATTA
CTCTTCAGCGAGCAGCCTCCGCACAGGAAGCATTGCAAGTGATGACTGAC
CTTGTGGCCGAGTACGGTTACGCATCAGAGGGGGAGACGTTCACTGTTGC
GGATCCGGAAGAAGTTTGGGTTTTGGAAATGAttgggaagggggagcacG
GTAAGGGAGCTGTGTGGGCGGCCAAGCGAATTCCCGATGGCTACATTTCC
GCGCACGCAAATCAAGCGCGAATTCAAACACTGGAAAGTGAAGGCATCGA
CCAGGTTTTATTCTCTGACGACGTAATTGACTTCGCCCGCCGAATAGGAC
GCTTTCCCACGGAGGCGCAGGATGATTTATTTTCTTTTAGTGATGTATAC
AATCCCATCACCTACCTGGCCGCACGCGCCTGTGAGGGCCGCGTGTGGGA
TTTTTTCCGCCGCGCCACAGCTGCAGACCAGTCGATCATGGGCCCATACC
TCGATTATGTAACAGGGCGAAACTTGACGAAACGAATGCCGCTTTATATC
AAACCTGTGGCGCCTTTGAGTACTTCGGACATTGTTGATGCCATGCGCAG
TCATTATGAAAATACTCCTCTGGCTTTCGACCAGGACGTAGGAGCTGAAG
CTTTCGGTCTCCCTTACCGCTGGCGGCCTTTGACGTGGCAACTTGACGAT
GGGCGCACGTTTTTCAATGAGCGCGCCGCGGCGACACAACAGACGGGGTT
TAGTCTCTTGGCACAGCTCCGAAGAGGAGTCCCTGATCCCATCAAGGCGC
TTCAATTTTTCGCAGTCGATGATACTGATTCATCAGTCATGATTCCTGTG
TATGGCGGCATGGCGCTTGTCCCTCCCAGCTACGGCCCAGGCAGCATATC
TGTTTTTGAGCCTGAAAAGGCATTTTGGGCGTTTAACATGGTGGCAAATT
TCGCATATGCTCGTTATGCCATAATTAATCCGGATGTCAGAAGGCGGCAA
GGCGCCTTGGAAGCGCAGCAATGGAAGCTGGCAGTTGAGATAGATGAGGA
ATTTACTCGATTATGGGGAGAGGACCAAATCAAGGCGGTCGCGATGATGA
CCACGGCCTGCGTCTCGAACGCTGAGAGCCTTGTCCTTGAATGGAGAAGG
TTTTACGGAGAACTCTTCGTCAAATTCATGGATGGAAACATCAAGACAAA
GGATAATCCAGAACAGCTTTTGCCAGATGTCGAGCAGCCTGGGTACCGCC
TGGAATGGCGTGAGCGTATCGTCCGGGAGACGGGTGAGAGATACAGATTC
CCTGCCGACATGTTTACGTCACAGCAATAGATGAGCTAGCGATAGGGCGT
CAGTGAGGCGTGGACAGACGAATTCTATGGCCGCGAAGCTAATGTGACTG
AGGTATGCATTCACACGCCAGGACCCTGAAATATACATGCAACACCAAGT
CATGGTGTGTACGACCATCGTTCCTCACGGTAGCTTAAAGCCCACCGCTC
TGGCCCACCAGGGCCATTGCTTGCTTCCATCTATAGCGATAAATCGCCTG
GCTTACACGGGAAGCGGTAACATATCTGAACTCGCATAATTCAACAACTC
CACTTCTCGGATGATATCATGCTGTAACAGCCACACAATCTGCGCAAGCT
TTTCTTGTCTCGCATCCTTTATGATATAATGTATATGTGGACACGAGATT
TATGGACGGGCATGGCTTGTCATTAGTCTCATTTGCCGTACAGGTGTCAA
CGATCCCGTGGTGGATCCCAAAGTCATGTTCTTGGCTCTTACCCGCTCTA
AGTCCTTCAAAAGAGTTTCCAggcttttcccgcctccaaaaGACGAGATC
ACGCGGAAAAATGAGCATAGGGGAAAGCGTTGCTCAAATGCCATACATTG
TATAGATTGCGTTTGTGTAGAAGCCATGGGATGGAGCTAAAATGTGATGA
AGAAATAAGAATCTGGAAATGAGGATGCGCATCATAACTCAGACAACGGT
AACCCACTAAACGGCGTTTGAGACATACCGCGTACACGCTTTCCAAAGTA
ATAGTGCGCATAGCCCGAGCCAGTCCCCAGAATTGCAGATGGGCGGCGAG
AGTGTACATGTGCGGAAGGTCAACGTGGATCGCAGCGGACGTCTCCTCCA
GTGTTTTTAATGGGCTCGCGGCTCTCACCAAGTCGCGAAGCTTCTGTGAT
CCCCGCTCAGGCAGCTTTGTCAAAATATCCTCTTCATCCATGAGCAGCAA
CAATGTCTGTGAGGGTTGAAAAGGGCCTATGCCGGAGGTATGACTCGTTG
AATTCCCGACCTCCACCTGATCGTCGTGCCGTGGAAACGACCCCGGAATA
CTCAGGCGAAGCCAGTCATTGATGATCACATCTACATCTTCGCCCTCCCG
AAGACTGTGATAAATCCGTTTCAGGTCAGCTGCGAGagcgctttcctcca
tcatcgTGTCCAGCATGGTCTGGGCGCCCTTGGCATGCATCCTTTCTGCA
ATGTCCAAAAGCGTACCAACTTCCAAGCTTACATACCCACAGCGCCGTTC
TTCATGCAGCAAAGCACGCGAAAGACGCCCTAGTACATCTTCCAAATGAT
GGACACCCCGACTCCTTTCTACCGCATCGAGGCGCTCACAGGTCGTCGCA
GTCGGTAATAACTTCACAGACCTCTCGCCACTGTGGTTGCACGCGACCGA
TCTTTGCCGTGCTGCCGCACGGGACATTGTGGGTAAGCACTGCTCTATCA
ATGAGTCTCTTGTCAGGGCTGTGGGTGGTGTGCGTCCCATCGCCAAGATC
ACGTTGAAAAGCAGGACATCGTCTGTCGCTATCTCCTTCGTGGCACTCGA
CGTAAGAACAGGGTAACTTAAATAACGAACGCGATCGATAGATATACGCA
GAGGATGGCCACATAGGACGCTTTTAGGACGGAAAAGGCGAGCGAAGACT
TCTGGCGTCAAATTGAGGAAGTCTTTCGCGCATCTGTACAGCGCCAAACT
TGTTGATGTAGATTTGCCGGTTGCAGAGTAAGGACTCAATCTTGGCAATG
GTGGATACCGAAAAACCAACCTCTGCCCCTTGTTGGCGTCATCGACCACC
AATGCAATACCAAGCAGGGTCGAAATCCCATCATGGGGCCACAGCTGCGG
AGTCATGATGCTACTGACCACAGGCGTTTCCCTTTACCCTATAGCTATTT
GCAACGGGGAGGTTAGCTTAGAGTGTGGCCAGTATGATGCGTAATTTGGC
CATTTAAGCTGCGTTTGCGCATGGAAGACATGATCTCACTGTGTGTCAAC
CTTTTTGCCGTCAGTGTGCTACGCGACAGTGACGCAGTAGTCTGGAGAGA
AGGCGACTGTACCGGAGGGCAGAAGGCGTAAGGTTATTCGTCGCTTTCAG
ATGCTCGCGCAACCGACCTTGTGGCGTCAGGCAGTATTACGGCGGTGGCT
AGGCCTGTCCGCAACAAGTAGAGCTTCCACAAATTTCGCAAAGAATGGAC
GGCAACCTCATCAGCAGTATATGCTCATACAAGGCACGATCCCGCAAGAT
GCGTGCTACCTTTTTTTTCGCCTCGATAGCGATAGTCctgcctttttttc
ttttgtgTCGATACAAGTCCGAATGATGTTATCCTCAGGATAACATGCTT
ATACTCACATGTAGAGTGACTTGAGAAGGTGTAAAGGTACTTAAGATCTA
TTTGTGCGCCAAAGAAATTTGTCAAAGGAAA back to topCoding sequence (CDS) from alignment at CM002467.1:441126..445506+ >rna6048 ID=rna6048|Name=rna6048|organism=Nannochloropsis gaditana|type=CDS|length=1239bp|location=Sequence derived from alignment at CM002467.1:441126..445506+ (Nannochloropsis gaditana)
ATGACTGACCTTGTGGCCGAGTACGGTTACGCATCAGAGGGGGAGACGTT
CACTGTTGCGGATCCGGAAGAAGTTTGGGTTTTGGAAATGAttgggaagg
gggagcacGGTAAGGGAGCTGTGTGGGCGGCCAAGCGAATTCCCGATGGC
TACATTTCCGCGCACGCAAATCAAGCGCGAATTCAAACACTGGAAAGTGA
AGGCATCGACCAGGTTTTATTCTCTGACGACGTAATTGACTTCGCCCGCC
GAATAGGACGCTTTCCCACGGAGGCGCAGGATGATTTATTTTCTTTTAGT
GATGTATACAATCCCATCACCTACCTGGCCGCACGCGCCTGTGAGGGCCG
CGTGTGGGATTTTTTCCGCCGCGCCACAGCTGCAGACCAGTCGATCATGG
GCCCATACCTCGATTATGTAACAGGGCGAAACTTGACGAAACGAATGCCG
CTTTATATCAAACCTGTGGCGCCTTTGAGTACTTCGGACATTGTTGATGC
CATGCGCAGTCATTATGAAAATACTCCTCTGGCTTTCGACCAGGACGTAG
GAGCTGAAGCTTTCGGTCTCCCTTACCGCTGGCGGCCTTTGACGTGGCAA
CTTGACGATGGGCGCACGTTTTTCAATGAGCGCGCCGCGGCGACACAACA
GACGGGGTTTAGTCTCTTGGCACAGCTCCGAAGAGGAGTCCCTGATCCCA
TCAAGGCGCTTCAATTTTTCGCAGTCGATGATACTGATTCATCAGTCATG
ATTCCTGTGTATGGCGGCATGGCGCTTGTCCCTCCCAGCTACGGCCCAGG
CAGCATATCTGTTTTTGAGCCTGAAAAGGCATTTTGGGCGTTTAACATGG
TGGCAAATTTCGCATATGCTCGTTATGCCATAATTAATCCGGATGTCAGA
AGGCGGCAAGGCGCCTTGGAAGCGCAGCAATGGAAGCTGGCAGTTGAGAT
AGATGAGGAATTTACTCGATTATGGGGAGAGGACCAAATCAAGGCGGTCG
CGATGATGACCACGGCCTGCGTCTCGAACGCTGAGAGCCTTGTCCTTGAA
TGGAGAAGGTTTTACGGAGAACTCTTCGTCAAATTCATGGATGGAAACAT
CAAGACAAAGGATAATCCAGAACAGCTTTTGCCAGATGTCGAGCAGCCTG
GGTACCGCCTGGAATGGCGTGAGCGTATCGTCCGGGAGACGGGTGAGAGA
TACAGATTCCCTGCCGACATGTTTACGTCACAGCAATAG back to top
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