rna6039, rna6039 (mRNA) Nannochloropsis gaditana

Overview
Namerna6039
Unique Namerna6039
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2065
Alignment locationCM002467.1:427532..428477 -

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Properties
Property NameValue
Producthistidine triad nucleotide binding protein
Orig transcript idgnl|cribi|Naga_100055g15.7345.mrna
Orig protein idgnl|cribi|Naga_100055g15.7345
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:427532..428477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g15gene5834Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6039rna6039-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24661.1cds6024Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6039 ID=rna6039|Name=rna6039|organism=Nannochloropsis gaditana|type=mRNA|length=2065bp
CGGAGGGAAACACAACTTTACTGGCTACAACATCTGAGCACTGCATTCTT
ATCGTTGAGAGGGATAATAAATGCATAGAACTTGGAAAAGTTTGCGTGCG
CAAACAGAGGGACCAAAGGGGTGGTGCAACATTCCAATGATCGAGCAACG
AAGCTGCTGGTGAAAGGCGACAGCACTGAGAGCGACACGATTTGTCTGCC
GCATTTTTGGACCAAGGCGTCACGCAGAAGGTGTTCAATTCTATCACAGA
GCGTAAGCGCTGTAGATTCACCGTTAAGGATCGATGCCTGTGCCTCAAAT
AAGGGTACAACGAGCTTCTTTAGTGGTTCTCCAGGGTGCAGAAACAGGGA
AGCCGCAAATCATTAGCCAGCGAGCGTTTCGTGCTACCCTTTCACATATA
AATTAATTATCGTTTCACTGGTCTCTTATTTTTAAAATCCATTGCCAGAG
AACAGTCCGGAAATTTTGTTTTAGTAGTGCATGGGAGAAGCCCTGTCCTA
TTTAGCACAGTGCCCCCCCAAAAAAACTCTTCGAAATCCTTTGCAGCCGA
AGCTGCGGTCAGATGACTAGTTTATGAATTGTTTTGGCATTACTGTTCTC
TGTTAGCAGGTCGCAAAGCAAAGCGAAGGATAGATTCACACCTTTTCACC
TCTCTTTCTTCACCTTGCAGGCGGAGGCTTGCTTTCCGCAGTTGAGCTAC
AGAGCGTTCTATGCATCTGCACAGGTTTACGGTAAACCGGATTTCGTTGC
GCTTAACCGTGGCGTGTGCGTGCTGTTGTGTCTTTGCCAATACTTCTGGA
ACAGCTGTGAGCGCAGCCTTTGTAGCGGTCGGTTTCTCTTCATCGGTTTC
ATTCCGGCTTGCGCCTTCTATCGTCCCGTCGCGGAATCCACCGGTGCTCG
GTATTCAGTCTGGAAGCGCAAGGGCGGGTAAGGAAAGACGCTGCCACTCA
GCTACCTCCATGAGCGCTTTTGCTGCTGGTGAGGACATCGAAGTCGGTGA
TGGAACACTGCTCCATTTTGTTTGGGTTCCGGAAGTCAGGTCTACTCAGG
ATGCAATGAGGACGCTGCTCGCAAGCAGCCGCCGGGACTCGCTCTCCCAA
AAAGGAGTTGACGCCTTAGCGCTGAGTGCAGGGTCCCAAATTCAGGGTCG
GGGGACGAGCGGCCGCGCTTGGATGGGCGGCGCGGGGAATATGTTTTTGA
CTGTGGCGCTTCCAGCGAGGACCCTGTCCGCCCTGACGTACCCGATCACG
CTGCTTCCTCTTCGGATGGGAACGTTGATCGCACGGGAGATTGTTCGCAT
TCTGCCCCACCCCGAGGCTCAAGCGAGAGTGCAGCTAAAGTGGCCCAACG
ACGTGCTACTTGACGACGGGAAAGTGAGCGGCCTATTGATCGAAATGGAC
GGCACATCCTCCTACTATCTTGTCGGCATTGGCGTCAACGTGGCTCAAGC
GCCTCACGTACCATCCTTGGGCGCGGATCGCGGCCGGCGAGCGGCCTGCT
TGGCGCAGTGTGGCTTGGAAGGTAGGGGCGGAGATACAGCCAGGGACTTG
TCCATCGCCATCGCAGTCTCCATTACTACGTGGTTAGGGGGGTCTCAGGA
GGATACAGCAGACTCTGTGATTGCAGACTGGGAAAAGCTTGCGACGTGGG
GGAAAGTGTACGATCTTCGGGACGGTGGGGCAGTCGTCCCATTAGCGCTG
GAAACGGATGGAAGACTGCGCGTGAGAGACCTTACCTCCGGGGCTACACG
TCTCTTGACGGCTGAGTACCTGCATTAAACACGTAGACACGTTTAAATAT
AGACGTGTTTCTGGAGCATTGTACGCAAACACGGATATGAAATCCCTTGT
GAATAGAATTTGTAAAGCGACACACAGTACGCGCATTGGGGCAATTCGTG
TCAGATGACATTTTCTCCCGTGTACAGATACAACACATGCTTTCTCTGAA
CGAATTTCTTGTTGCGTGGTTCAAATGCCTTATTTTTGGACACGACATAA
TATTGTCCACCAGTTATGAAGGGATTTAATAAATAAATAAATCCATCTAA
AAGCCTTGCAATAAC
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protein sequence of rna6039

>rna6039-protein ID=rna6039-protein|Name=rna6039|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MPCNLLNAARMGNLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAY
EDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQ
VLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEG
TSWCWSHDAVCSHVAIETTTRGCPATACYCKAFRWIYLFIKSLHNWWTIL
CRVQK
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mRNA from alignment at CM002467.1:427532..428477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6039 ID=rna6039|Name=rna6039|organism=Nannochloropsis gaditana|type=mRNA|length=946bp|location=Sequence derived from alignment at CM002467.1:427532..428477- (Nannochloropsis gaditana)
ATGCCCTGCAATCTCCTCAACGCTGCTCGCATGGGTAACCTCCTTACAAA
GGGGGTGACATACGAGGCCGACAACGTTACCATCAAGCGATGCCTTTTCT
GTGACATAGCTGCTGACAAGCAAGGCTCCCGCAAAACGCCAATAGCGTAC
GAGGATGAACAGGTGCGGTCAGAAAGGGGAGACTGTTTCCATGTGCTTAA
CGCTACGCAACCCCTCGTACCAACACCGGTAGATTTGACCGCCGATAGGA
CTTAAAAGCGCCGCGGAAAGCTTGTATCCATCTCCTTGTCATTTCTAATC
AGGACAGGTAGTGGTCTTTGCCCCCCTGGAGAAATGCGCCTTGGAACACT
GGCTTGTGGTTCCCCGGGCTCACATCCGGAATGCCACTACGCTGCAGCCT
ACGGACTTGCCCATACTCAAATATATGCGGGACGTGGGTTATCAAGTGCT
CAAGGATAAGCAACCGGATGTAAATCTCTCAAAAATGCAGTTTTGCTTTC
ATATCGAGCCCTTCAACTCTAGTACGTTTTGTGTGTGATTGACTCTTGTC
TTGACTTGGTCTTATTTGGCGGGTTGTGTAGTATTTCCTGGAATTAGAGC
TGAATTGCGTACTCTAAAATCGAAATTCTACCGACTTCTTCGATTCCCGC
CAGTTGCCCACATACATCTCCATTGTCAGGTGCCGCCTTTCATCACGCCG
ATTTCTGCGTTTAAGTACAAGGAGGGCACTTCTTGGTGTTGGAGCCACGA
CGCAGTTTGTTCACAGTTGGAGGAGAAACGAAATGCTCGTTGAATGAGAT
TAAACGAGTGATGAAGTGTAGCAATTGAGACAACAACGCGTGGCTGTCCG
GCGACCGCCTGTTATTGCAAGGCTTTTAGATGGATTTATTTATTTATTAA
ATCCCTTCATAACTGGTGGACAATATTATGTCGTGTCCAAAAATAA
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Coding sequence (CDS) from alignment at CM002467.1:427532..428477-

>rna6039 ID=rna6039|Name=rna6039|organism=Nannochloropsis gaditana|type=CDS|length=2472bp|location=Sequence derived from alignment at CM002467.1:427532..428477- (Nannochloropsis gaditana)
TGTAGCAATTGAGACAACAACGCGTGGCTGTCCGGCGACCGCCTGTTATT
GCAAGGCTTTTAGATGGATTTATTTATTTATTAAATCCCTTCATAACTGG
TGGACAATATTATGTCGTGTCCAAAAATAATTGCCCACATACATCTCCAT
TGTCAGGTGCCGCCTTTCATCACGCCGATTTCTGCGTTTAAGTACAAGGA
GGGCACTTCTTGGTGTTGGAGCCACGACGCAGTTTGTTCACAGTAGTGGT
CTTTGCCCCCCTGGAGAAATGCGCCTTGGAACACTGGCTTGTGGTTCCCC
GGGCTCACATCCGGAATGCCACTACGCTGCAGCCTACGGACTTGCCCATA
CTCAAATATATGCGGGACGTGGGTTATCAAGTGCTCAAGGATAAGCAACC
GGATGTAAATCTCTCAAAAATGCAGTTTTGCTTTCATATCGAGCCCTTCA
ACTCTAATGCCCTGCAATCTCCTCAACGCTGCTCGCATGGGTAACCTCCT
TACAAAGGGGGTGACATACGAGGCCGACAACGTTACCATCAAGCGATGCC
TTTTCTGTGACATAGCTGCTGACAAGCAAGGCTCCCGCAAAACGCCAATA
GCGTACGAGGATGAACAGTGTAGCAATTGAGACAACAACGCGTGGCTGTC
CGGCGACCGCCTGTTATTGCAAGGCTTTTAGATGGATTTATTTATTTATT
AAATCCCTTCATAACTGGTGGACAATATTATGTCGTGTCCAAAAATAATT
GCCCACATACATCTCCATTGTCAGGTGCCGCCTTTCATCACGCCGATTTC
TGCGTTTAAGTACAAGGAGGGCACTTCTTGGTGTTGGAGCCACGACGCAG
TTTGTTCACAGTAGTGGTCTTTGCCCCCCTGGAGAAATGCGCCTTGGAAC
ACTGGCTTGTGGTTCCCCGGGCTCACATCCGGAATGCCACTACGCTGCAG
CCTACGGACTTGCCCATACTCAAATATATGCGGGACGTGGGTTATCAAGT
GCTCAAGGATAAGCAACCGGATGTAAATCTCTCAAAAATGCAGTTTTGCT
TTCATATCGAGCCCTTCAACTCTAATGCCCTGCAATCTCCTCAACGCTGC
TCGCATGGGTAACCTCCTTACAAAGGGGGTGACATACGAGGCCGACAACG
TTACCATCAAGCGATGCCTTTTCTGTGACATAGCTGCTGACAAGCAAGGC
TCCCGCAAAACGCCAATAGCGTACGAGGATGAACAGTGTAGCAATTGAGA
CAACAACGCGTGGCTGTCCGGCGACCGCCTGTTATTGCAAGGCTTTTAGA
TGGATTTATTTATTTATTAAATCCCTTCATAACTGGTGGACAATATTATG
TCGTGTCCAAAAATAATTGCCCACATACATCTCCATTGTCAGGTGCCGCC
TTTCATCACGCCGATTTCTGCGTTTAAGTACAAGGAGGGCACTTCTTGGT
GTTGGAGCCACGACGCAGTTTGTTCACAGTAGTGGTCTTTGCCCCCCTGG
AGAAATGCGCCTTGGAACACTGGCTTGTGGTTCCCCGGGCTCACATCCGG
AATGCCACTACGCTGCAGCCTACGGACTTGCCCATACTCAAATATATGCG
GGACGTGGGTTATCAAGTGCTCAAGGATAAGCAACCGGATGTAAATCTCT
CAAAAATGCAGTTTTGCTTTCATATCGAGCCCTTCAACTCTAATGCCCTG
CAATCTCCTCAACGCTGCTCGCATGGGTAACCTCCTTACAAAGGGGGTGA
CATACGAGGCCGACAACGTTACCATCAAGCGATGCCTTTTCTGTGACATA
GCTGCTGACAAGCAAGGCTCCCGCAAAACGCCAATAGCGTACGAGGATGA
ACAGTGTAGCAATTGAGACAACAACGCGTGGCTGTCCGGCGACCGCCTGT
TATTGCAAGGCTTTTAGATGGATTTATTTATTTATTAAATCCCTTCATAA
CTGGTGGACAATATTATGTCGTGTCCAAAAATAATTGCCCACATACATCT
CCATTGTCAGGTGCCGCCTTTCATCACGCCGATTTCTGCGTTTAAGTACA
AGGAGGGCACTTCTTGGTGTTGGAGCCACGACGCAGTTTGTTCACAGTAG
TGGTCTTTGCCCCCCTGGAGAAATGCGCCTTGGAACACTGGCTTGTGGTT
CCCCGGGCTCACATCCGGAATGCCACTACGCTGCAGCCTACGGACTTGCC
CATACTCAAATATATGCGGGACGTGGGTTATCAAGTGCTCAAGGATAAGC
AACCGGATGTAAATCTCTCAAAAATGCAGTTTTGCTTTCATATCGAGCCC
TTCAACTCTAATGCCCTGCAATCTCCTCAACGCTGCTCGCATGGGTAACC
TCCTTACAAAGGGGGTGACATACGAGGCCGACAACGTTACCATCAAGCGA
TGCCTTTTCTGTGACATAGCTGCTGACAAGCAAGGCTCCCGCAAAACGCC
AATAGCGTACGAGGATGAACAG
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Synonyms
Publications