EWM24661.1, cds6024 (CDS) Nannochloropsis gaditana

Overview
NameEWM24661.1
Unique Namecds6024
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:428316..428477 -
Alignment locationCM002467.1:427957..428170 -
Alignment locationCM002467.1:427713..427824 -
Alignment locationCM002467.1:427532..427661 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24661.1
Producthistidine triad nucleotide binding protein
Orig transcript idgnl|cribi|Naga_100055g15.7345.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:428316..428477 -
CM002467.1supercontigCM002467.1:427957..428170 -
CM002467.1supercontigCM002467.1:427713..427824 -
CM002467.1supercontigCM002467.1:427532..427661 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001310Histidine_triad_HIT
IPR011146HIT-like
Homology
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|585106183|gb|EWM24661.1| (histidine triad nucleotide binding protein [Nannochloropsis gaditana])

HSP 1 Score: 431.409 bits (1108), Expect = 3.126e-153
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MPCNLLNAARMGNLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIETTTRGCPATACYCKAFRWIYLFIKSLHNWWTILCRVQK 205
            MPCNLLNAARMGNLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIETTTRGCPATACYCKAFRWIYLFIKSLHNWWTILCRVQK
Sbjct:    1 MPCNLLNAARMGNLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIETTTRGCPATACYCKAFRWIYLFIKSLHNWWTILCRVQK 205          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|873218111|emb|CEM40143.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 121.709 bits (304), Expect = 2.493e-30
Identity = 67/167 (40.12%), Postives = 95/167 (56.89%), Query Frame = 0
Query:   15 LTKGVTYEADNVTIKRCLFCDIAADKQ--GSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSK-----------------MQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCS 162
            L K VTY  +   + +C+FC IA+ ++   + K  + YEDE V+ FAP E  +L H LV P+ HIRN  TL  + +P+L +MR VG QV  D+       K                 +QF FH  P++S+ H+HLHC V PFI+P+   KY++ TSWC S+DA+ S
Sbjct:   54 LYKSVTY-GEYGEVLKCVFCRIASGEELPANGKGSVLYEDESVISFAPREPASLVHILVCPKKHIRNCRTLDSSHVPLLDHMRRVGQQVAADEFAKTRTRKKGSRSHDSMAGTPFDDRLQFSFHAPPWHSVDHLHLHCFVKPFISPVLWVKYRQDTSWCVSYDAIRS 219          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|1214710004|gb|OWZ21133.1| (hypothetical protein PHMEG_0004347 [Phytophthora megakarya])

HSP 1 Score: 111.309 bits (277), Expect = 8.909e-26
Identity = 72/195 (36.92%), Postives = 91/195 (46.67%), Query Frame = 0
Query:   17 KGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKD-KQPDVNL----------------------SKMQFCFHIEPFNSIAHIHLHCQVPPFITP------ISAFKYKEGTSWCWSHDAVCSHVAIETTTRGCPATACYCKA 182
            KGVTY  D   + RC FC+I      S   P  YEDE VVVF PL    + H LVVPR HIRN   L P+D  +L++MR+V   VL+D  +P V L                      S  +F FH  PFNSI H+H+H     F T       + + KY+  T WC S D V + +      RG  A+     A
Sbjct:  120 KGVTYGHDGA-LMRCRFCEILE----SGDEPFLYEDEDVVVFRPLAPVVVSHILVVPRRHIRNVNKLTPSDAELLRHMREVAAMVLRDLPRPTVMLAPSKAERAHNITEDLTDEEDLESDFKFAFHSPPFNSIDHVHMHA----FRTRDGRFGCVGSIKYRTETWWCRSFDEVMTRLGRSRKQRGSDASTVESDA 305          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|298710705|emb|CBJ32129.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.457 bits (267), Expect = 1.251e-25
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 0
Query:   13 NLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAV---CSHVAIETTTRGCPAT 176
            ++++KGV + A    ++ CLFCD A     +++  + YED+ V+ F+PL+  A +H LVVP+ HI     L  TD P+L  M++V  ++LK      + S+ Q  FHI P+NS+ H+HLH    PF++  +  ++ EG  WC S + V    S    +      P T
Sbjct:   33 DIVSKGVVWNARG-EMQSCLFCDFA---NHTKEKELLYEDDLVIAFSPLKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK-----CDASQTQLSFHIPPWNSVDHLHLHALETPFLSWWNGLRFSEGKPWCASFEGVRYWASGAGAQEEKESVPET 190          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|1173944025|gb|OQR92807.1| (hypothetical protein ACHHYP_03179 [Achlya hypogyna])

HSP 1 Score: 103.219 bits (256), Expect = 1.565e-23
Identity = 61/176 (34.66%), Postives = 88/176 (50.00%), Query Frame = 0
Query:    5 LLNAARMG-NLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIETTTRGC---PAT 176
            ++NA  +G + + KGV Y   N  +  C FC I A    +    + Y++E + VF PL   +  H LVVP+ H+RN   L P+ L +L  M++V   VL+         ++   FH  PFNSI H+H+H  V    T +   KYK GT WC S   V + +  +T   G    PAT
Sbjct:   25 VVNAQELGGDYVKKGVAYSKANRDVLCCKFCHIVA----ACSDEVIYDEEHISVFRPLHPASASHILVVPKHHVRNINQLTPSHLALLVRMKEVATYVLQQLGYYTESRRLHLAFHSPPFNSIDHVHMHAMVASRRTALGCVKYKTGTWWCRSFGYVVNKLVAQTQKDGTMPIPAT 196          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|301122179|ref|XP_002908816.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099578|gb|EEY57630.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.99 bits (258), Expect = 4.985e-23
Identity = 67/177 (37.85%), Postives = 84/177 (47.46%), Query Frame = 0
Query:   17 KGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKD-KQPDVNL--------------------SKMQFCFHIEPFNSIAHIHLHCQVPPFITP------ISAFKYKEGTSWCWSHDAVCSHVAI 166
            KGVTY  D   +  C FC+I      S   P  YEDE VVVF PL    + H LVVPR HIRN   L P D  +L+ MR+V   VL+D  +P V L                    S  +F FH  PFNSI H+H+H     F T       + + KY+  T WC S D V + + +
Sbjct:  128 KGVTYSHDGALVH-CRFCEILE----SGDEPFLYEDEDVVVFRPLAPVVVSHILVVPRRHIRNVNKLTPDDAALLRRMREVAANVLRDMPRPTVMLAPPKAERAHVTADCTDEDSESDFKFAFHSPPFNSIDHVHMHA----FRTRDGRFGCVGSIKYRTETWWCRSFDEVMTRLGL 295          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|552922141|gb|ESA06430.1| (hypothetical protein GLOINDRAFT_34201 [Rhizophagus irregularis DAOM 181602] >gi|595439146|gb|EXX52638.1| hypothetical protein RirG_251360 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 98.9821 bits (245), Expect = 6.856e-23
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 0
Query:   27 TIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIET 168
            T + C+FCD+   K       I YEDE++V F  +   A  H L++PR HI N  +L P D P+LK+M D G Q+L   +    LS+ +  FH+ P+NS+ H+HLHC   P+     + KY E   W  S + +   ++  T
Sbjct:   12 TTQDCVFCDLTDKK-------IVYEDERIVAFHDISPAAKLHLLIIPRNHIDNVDSLTPNDAPLLKHMIDTGNQLL--SESGYQLSERRVGFHVPPYNSVHHLHLHCIGLPYRNIFYSTKYTELVHWYSSGEKILKSLSSST 144          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|1173927673|gb|OQR81532.1| (hypothetical protein THRCLA_23352 [Thraustotheca clavata])

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-22
Identity = 64/202 (31.68%), Postives = 97/202 (48.02%), Query Frame = 0
Query:    5 LLNAARMG-NLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKD----KQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAVCSHVAIETTTRGCPATACYCKAFRWIYLFIKSLHNWWTILC 201
            ++NA  +G + + KGV Y   +  +  C FC I A    +    + Y++E + VF PL   +  H LVVP+ H+RN   L PT L +L  M++V   VL +     + D   +K+   FH  PFNSI H+H+H  V    T + + KYK GT WC S+  V + + ++   +         +A         S H   T LC
Sbjct:   24 VVNANELGGDYVKKGVAYSNRDKDVMCCKFCHIVA----ACTNEVIYDEEHISVFRPLHPASKSHILVVPKHHLRNINYLTPTHLSLLMRMKEVAEYVLSELGYCNKYD---AKLHLAFHSPPFNSIDHVHMHAMVKTRRTALGSVKYKTGTWWCRSYTYVVNRLLVKQREKSSSTIVARPRAL--------SFHGRETSLC 210          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|675203097|ref|XP_008910433.1| (hypothetical protein PPTG_15145 [Phytophthora parasitica INRA-310] >gi|566016793|gb|ETI39704.1| hypothetical protein F443_14718 [Phytophthora parasitica P1569] >gi|567954220|gb|ETK79858.1| hypothetical protein L915_14337 [Phytophthora parasitica] >gi|567982874|gb|ETL33277.1| hypothetical protein L916_14242 [Phytophthora parasitica] >gi|568012386|gb|ETL86564.1| hypothetical protein L917_14033 [Phytophthora parasitica] >gi|568042398|gb|ETM39729.1| hypothetical protein L914_14159 [Phytophthora parasitica] >gi|568089664|gb|ETN04506.1| hypothetical protein PPTG_15145 [Phytophthora parasitica INRA-310] >gi|570320524|gb|ETO68472.1| hypothetical protein F444_14722 [Phytophthora parasitica P1976] >gi|570944346|gb|ETP09603.1| hypothetical protein F441_14576 [Phytophthora parasitica CJ01A1] >gi|570975763|gb|ETP37701.1| hypothetical protein F442_14534 [Phytophthora parasitica P10297])

HSP 1 Score: 102.834 bits (255), Expect = 1.318e-22
Identity = 63/173 (36.42%), Postives = 82/173 (47.40%), Query Frame = 0
Query:   17 KGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKD-KQPDVNL--------------------SKMQFCFHIEPFNSIAHIHLHC--QVPPFITPISAFKYKEGTSWCWSHDAVCSHVAI 166
            KGVTY  D   +  C FC+I      S   P  YEDE +VVF PL    + H LVVPR HIRN   L P D  +L+ MR+V   VL++  +P V L                    S  +F FH  PFNSI H+H+H           + + KY+  T WC S D V + + +
Sbjct:  129 KGVTYGHDGALVH-CRFCEILE----SGDEPFLYEDEDIVVFRPLAPVVVSHILVVPRRHIRNVNKLTPDDAALLRRMREVAASVLREMPRPSVMLAPSKAERAHISTDSTDEDSESDFKFAFHSPPFNSIDHVHMHAFRTRDGRFGAVGSIKYRTETWWCRSFDEVMTRLGL 296          
BLAST of EWM24661.1 vs. NCBI_GenBank
Match: gi|970635210|gb|KUF80173.1| (Histidine triad nucleotide-binding protein 3 [Phytophthora nicotianae] >gi|970644136|gb|KUF85110.1| Histidine triad nucleotide-binding protein 3 [Phytophthora nicotianae])

HSP 1 Score: 102.449 bits (254), Expect = 1.486e-22
Identity = 63/173 (36.42%), Postives = 82/173 (47.40%), Query Frame = 0
Query:   17 KGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKD-KQPDVNL--------------------SKMQFCFHIEPFNSIAHIHLHC--QVPPFITPISAFKYKEGTSWCWSHDAVCSHVAI 166
            KGVTY  D   +  C FC+I      S   P  YEDE +VVF PL    + H LVVPR HIRN   L P D  +L+ MR+V   VL++  +P V L                    S  +F FH  PFNSI H+H+H           + + KY+  T WC S D V + + +
Sbjct:  125 KGVTYGHDGALVH-CRFCEILE----SGDEPFLYEDEDIVVFRPLAPVVVSHILVVPRRHIRNVNKLTPDDAALLRRMREVAASVLREMPRPSVMLAPSKAERAHISTDSTDEDSESDFKFAFHSPPFNSIDHVHMHAFRTRDGRFGAVGSIKYRTETWWCRSFDEVMTRLGL 292          
The following BLAST results are available for this feature:
BLAST of EWM24661.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106183|gb|EWM24661.1|3.126e-153100.00histidine triad nucleotide binding protein [Nannoc... [more]
gi|873218111|emb|CEM40143.1|2.493e-3040.12unnamed protein product [Vitrella brassicaformis C... [more]
gi|1214710004|gb|OWZ21133.1|8.909e-2636.92hypothetical protein PHMEG_0004347 [Phytophthora m... [more]
gi|298710705|emb|CBJ32129.1|1.251e-2534.13expressed unknown protein [Ectocarpus siliculosus][more]
gi|1173944025|gb|OQR92807.1|1.565e-2334.66hypothetical protein ACHHYP_03179 [Achlya hypogyna... [more]
gi|301122179|ref|XP_002908816.1|4.985e-2337.85conserved hypothetical protein [Phytophthora infes... [more]
gi|552922141|gb|ESA06430.1|6.856e-2335.92hypothetical protein GLOINDRAFT_34201 [Rhizophagus... [more]
gi|1173927673|gb|OQR81532.1|1.085e-2231.68hypothetical protein THRCLA_23352 [Thraustotheca c... [more]
gi|675203097|ref|XP_008910433.1|1.318e-2236.42hypothetical protein PPTG_15145 [Phytophthora para... [more]
gi|970635210|gb|KUF80173.1|1.486e-2236.42Histidine triad nucleotide-binding protein 3 [Phyt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6039rna6039Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications