rna6028, rna6028 (mRNA) Nannochloropsis gaditana

Overview
Namerna6028
Unique Namerna6028
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2752
Alignment locationCM002467.1:403441..404490 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g26.7349.mrna
Orig protein idgnl|cribi|Naga_100055g26.7349
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:403441..404490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g26gene5823Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6028rna6028-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24665.1cds6013Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6028 ID=rna6028|Name=rna6028|organism=Nannochloropsis gaditana|type=mRNA|length=2752bp
CCCATCGCCTTCGGCTCGGGGGCCGCGAATCGCGTTCTTCTACTGATTCC
TTTTGTGAACCATCATTCTGACGCCTACAACAGGCATTACTGTTTGACAG
AAGTCGTGAATTTCCTATTAATCCTTTCGAGGACATCATTTTCGCTCCTG
CGTCAGAGGGTACCTTTCGACACACCCTGCCCCTGGCTCCTCGTGTCTGC
CCAACAGCCTTCCAGGGTATTTAAAAAGGTTTTACATTACAAACGCATTA
TCTACATACAGCAGAAGCTCTTTGGTTCCATGTGTTACACGGTGTCGGGA
TACATCCCGAGCTTTGGAATAGCGCGCTTCGCCCGTGTCCGGCGCCTACC
ACCCAGTCGGTAACCTCCTCTCGCTCTATCCTTCCACTATCTACACTGCA
TTTCGCGATGAATTGCGTGACATTTTTCAGCTGGAATGTTGCAGCACTTC
GATCTCTAGATAAAGGCTCGGGTATCTCGTCGAATGCGGCGTCTAAGAAT
GACTGGCTTGGATGTAAGCTCGCGGCCTTGGGTTCACCCACATTTGTCTG
CCTGCAGGAGACGAAAATATCGCGGGATATGTTGACCGAGGACGTGGCAA
CGCTCAAGCATTATCACGCCTTTTTTGCCCACACACATCGGGGTGTGGCA
CAAGGAGGAGCGTACGCTGGTGTGGTCACGTACGTGAGCAAGCATGTCGG
GGTGCATGCGGCCTCGGCGGGTTTGGTGTGCTGTGCTTATGAACGCCGGA
AGGGCCTGAATGACATCCCGAGCACAGTGGCTGGCAAAGCTTGCCCATTT
GAATGCGGAATTTTTCGACGCATTTTTGAGGAGATAGTCCACGAGTCAGA
CAATTTTGAGGCCGAGCCGGTCAAGGCTGAACAAAAGAGAAGTGCAGAAG
CCAGACGGAGCGATGGGGGAGACGCAGGCGAGGAAGAGGACTACGAAGGA
TGTATTTCGTCAGCTGAAGGAATTCTCAATATGATTCAGCCCGAAGATAT
ACTACGCAAAATAGACACAGAGGGACGTGTGGTCATGACGGACCACGGTC
ATTTTTTGCTTCTGAACGTGTACGCCCCGTTCAATGGCAGGCCGGGTCGC
GCTCGCTTCAAAAAAGCATTCAATGCTGCTCTTTTGGCTCGTATTATAGC
ATTCACGGTATCGGGACGCGAAGTGGTGCTTTGTGGGGACCTGAACGCTA
TCGCGGACGCAAAAGACTCGGTCGAGCGTCCCTCGGAGGAAGAGCTTGCG
GCTGCTCCATGGGCCCGGTGGATGCGCACGCTGCTTGGATCGCGCCAAGC
TGCCCTAGAACAAGCAAAGGGGGGGGGTAAAAGTAAGGACTCGCGGTGGG
AGTGGCTTCCGAATGAATGCATGAATTGGGAGTCTGCCCCGAGCTGGCCG
CTTCTGGTGGACACGTTTCGCGAGCTGCACCCTTTCCGGACCGACGCGTT
CTCCTGCTGGTGCAATCAGACGGCAGCGCGTCACACAAATTATGGGCGGC
GTATAGACTACATTCTTGCGTCACCGGGTCTGTGCGGCTACGCAGAGGGT
CCCGGTATCGTCGCCCACTTGGAGGAGGCGGCCGTCAGACAGGAGGTGCG
CGGCAGCGATCATTGTCCGGTGACTGCGCGCTTCTCTTTCTCAAAGCTTA
CAGATGGGTCATATCTTTCTTTGCCCTCTCCTTTTTCGGAGCGCGGTAGC
GGACGCATTCTTCTCCCCCCGCTTTGCACGGGTAACTACCCCGAATTTCG
AGCCCGACAGGCCGGCATTCACACATTTCTTCTGAAGCCATCGCTCAAAG
TGGCCACCACTCCCTATCCCAGTGGTTGTGTTGACCAAAGTTTCAGCAAC
GATTTCCTGCACGAAAAGCTTAAGGTTTGCGATCCGCTATCTCCGTCAGC
TCCCTCGCTTCATGCAAGCCACGAGGCTAGGGCTCGGCAGGGAGGCATGC
AAGGCTCTATGGTGAAGTGCGCACGCACCAGCACAATTGGGAGGAAGCGC
ACCAAATCCAAATCTTCTGCAGCTCAGGTGCCGACCAAATCACAGATGAC
TCTGACTCATTATGGCATTGCCAGCACCAGAGCCAAAGGGGGGGATGAGA
GCCGTGAAGCGACGGAGGAAAAGATGACCACTGGGACGTCCGCCTCCTTT
GTTTCTTCGAAAGCATTAGCGCGTGAGCAACACTCATCTACTTTGTATGC
TACCAAATCATCTTCTCTATCTTCATCTACCATGTCGGCTCCCCAGCCCG
GTGTCATGCTGGAAGCCACACGACGAGAGGTCTTTTTGAGTGCCTTCCGA
TCCCAGAGGGACAACACCCCACGATGTCAGGGTCATAATGAGCCCATGGT
CCGACGACATGTCAAAAAGGCAGATAGTGGCAACCTTGGAAGGTATTTTT
TCTGTTGTGCACGGCCTGTCGGCACAGATGGAGACAAAGAAGCGCGTTGC
AGAGATTTTCTATGGGAAGACAGTTTAGCAATGGGAGCAGGATTCCGGCG
TGTCCGCGGTCTGGTGAAAAAAGAGAAACCTAGCAAGACGGGCGATGTGT
AACCAGGTCTTTGAAGTGCTTGTGGCACGCTAGATGAAACAAGCATCAAG
AACGAGAAGTACACATCCGTGGCTTGACAGAAGAGTATCGCCTTGAACAA
GGATTTTAAAATGTGCATTTTTTCGGTACGCAAAAATAAAACGCAAATAG
CGAAATCTAAACTGTGCTGGTCAACTCCGTGTTTCAGGCTGGAGGTTGCT
CC
back to top

protein sequence of rna6028

>rna6028-protein ID=rna6028-protein|Name=rna6028|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MLLEGAASSFKESRGSVFCANYCLAIEKKTLHLPALEVPWAARIERGRRA
SNSQPARVVVKQHLELGEVSCYELVGFPLSYNHDRKAEIESDLTSPVSLP
GRGGGSRQDGTQNLERCHWSSLIFEQCARRSYLSASEFTTCHYKEGCNFN
STQ
back to top

mRNA from alignment at CM002467.1:403441..404490+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6028 ID=rna6028|Name=rna6028|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp|location=Sequence derived from alignment at CM002467.1:403441..404490+ (Nannochloropsis gaditana)
ATGTTGCTGGAAGGGGCAGCTTCATCCTTCAAGGAAAGCCGTGGAAGCGT
GTTCTGTGCCAATTACTGTCTTGCTATCGAAAAAAAAACGCTTCATCTTC
CTGCACTAGAGGTACCCTGGGCGGCTCGGATCgaacgagggaggcgagca
AGCAACTCGCAACCTGCCCGCGTAGTGGTAAAGCAGCACCTAGAGCTGGG
AGAGGTATCGTAAGGAAATCCCACAAATGTGGATTTTTGTAAACAATAGC
TTGAATAACCCCTTGGGAATGTCCACAGAATCATGTGCGTTCTAAATAAC
TTTGATTTCGGCCAAAAGATGATCCGTCCACCCACCATCTCGTCGTCCGT
CTCCGGCCCAGCCGGGTGCCACCACACCCCCTCACTTCTTGGCGCTCGGA
GAACCGCCTCAATGCGGGCTATTTAGGGCGAAGATAGGGCATGCATTCTC
TCCGAACTAACCATACTCATAAATAACTCAGCACTCATCTTATAACGATT
GTCATTCCACATTCTCTGAATGGGTCGCACCTTTTGTCGCATCCCACCTC
CTGTGGCCACTGAGAAGCACAAACCGAGAAATTTTGAGTAAAAGGCGCAC
TTATATTTTATGCTCTCACACGCATTTGAATGTCTTACATGCATTCATGA
CTAAAGATGTTATGGTGAGAAATCTGCAACGGAACCAGTTGTGCAATCAG
GGCTCACCCTGCCAGGATAAGGCtatctttcttttcaaaCACAAGCTGAC
AAGTTACACGCACGCGTCTGACTTTAAACGTTCCTTTTTCCCGCGTATTG
CACAGAACTCGTGGGTTTCCCTTTAAGTTACAATCACGATCGAAAAGCAG
AAATTGAGTCCGATCTGACGTCGCCTGTCAGCCtgccaggaagaggaggg
ggcagtcGACAAGACGGAACGCAAAACCTGGAACGCTGTCATTGGTCCTC
TTTGATCTTTGAGCAGTGCGCGCGACGTTCGTACCTCTCAGCCAGCGAGT
TCACCACGTGTCATTACAAAGAGGGGTGCAACTTTAATTCCACCCAGTAG
back to top

Coding sequence (CDS) from alignment at CM002467.1:403441..404490+

>rna6028 ID=rna6028|Name=rna6028|organism=Nannochloropsis gaditana|type=CDS|length=1386bp|location=Sequence derived from alignment at CM002467.1:403441..404490+ (Nannochloropsis gaditana)
ATGTTGCTGGAAGGGGCAGCTTCATCCTTCAAGGAAAGCCGTGGAAGCGT
GTTCTGTGCCAATTACTGTCTTGCTATCGAAAAAAAAACGCTTCATCTTC
CTGCACTAGAGGTACCCTGGGCGGCTCGGATCgaacgagggaggcgagca
AGCAACTCGCAACCTGCCCGCGTAGTGGTAAAGCAGCACCTAGAGCTGGG
AGAGGTATCATGTTATGAACTCGTGGGTTTCCCTTTAAGTTACAATCACG
ATCGAAAAGCAGAAATTGAGTCCGATCTGACGTCGCCTGTCAGCCtgcca
ggaagaggagggggcagtcGACAAGACGGAACGCAAAACCTGGAACGCTG
TCATTGGTCCTCTTTGATCTTTGAGCAGTGCGCGCGACGTTCGTACCTCT
CAGCCAGCGAGTTCACCACGTGTCATTACAAAGAGGGGTGCAACTTTAAT
TCCACCCAGTAGATGTTGCTGGAAGGGGCAGCTTCATCCTTCAAGGAAAG
CCGTGGAAGCGTGTTCTGTGCCAATTACTGTCTTGCTATCGAAAAAAAAA
CGCTTCATCTTCCTGCACTAGAGGTACCCTGGGCGGCTCGGATCgaacga
gggaggcgagcaAGCAACTCGCAACCTGCCCGCGTAGTGGTAAAGCAGCA
CCTAGAGCTGGGAGAGGTATCATGTTATGAACTCGTGGGTTTCCCTTTAA
GTTACAATCACGATCGAAAAGCAGAAATTGAGTCCGATCTGACGTCGCCT
GTCAGCCtgccaggaagaggagggggcagtcGACAAGACGGAACGCAAAA
CCTGGAACGCTGTCATTGGTCCTCTTTGATCTTTGAGCAGTGCGCGCGAC
GTTCGTACCTCTCAGCCAGCGAGTTCACCACGTGTCATTACAAAGAGGGG
TGCAACTTTAATTCCACCCAGTAGATGTTGCTGGAAGGGGCAGCTTCATC
CTTCAAGGAAAGCCGTGGAAGCGTGTTCTGTGCCAATTACTGTCTTGCTA
TCGAAAAAAAAACGCTTCATCTTCCTGCACTAGAGGTACCCTGGGCGGCT
CGGATCgaacgagggaggcgagcaAGCAACTCGCAACCTGCCCGCGTAGT
GGTAAAGCAGCACCTAGAGCTGGGAGAGGTATCATGTTATGAACTCGTGG
GTTTCCCTTTAAGTTACAATCACGATCGAAAAGCAGAAATTGAGTCCGAT
CTGACGTCGCCTGTCAGCCtgccaggaagaggagggggcagtcGACAAGA
CGGAACGCAAAACCTGGAACGCTGTCATTGGTCCTCTTTGATCTTTGAGC
AGTGCGCGCGACGTTCGTACCTCTCAGCCAGCGAGTTCACCACGTGTCAT
TACAAAGAGGGGTGCAACTTTAATTCCACCCAGTAG
back to top
Synonyms
Publications