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Properties
| Property Name | Value |
|---|
| Product | dna-apurinic or apyrimidinic site lyase 2 |
| Orig transcript id | gnl|cribi|Naga_100055g27.7328.mrna |
| Orig protein id | gnl|cribi|Naga_100055g27.7328 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:400047..402798 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6027 ID=rna6027|Name=rna6027|organism=Nannochloropsis gaditana|type=mRNA|length=3185bp
ACAAAATCGTGTCATGGCAGGTTTCTATCACCTCCCCCCGCTCCTGCCCT
CGCCCTGCTGCTTCTTTCTCGTAGTTTAGCTTCATTTTAATATTTTAAAA
CATACACTGTCCCCTATTTGAAGTTCCCACTTTTGTATTCAAAGGTGGAC
AGCCCGCTCAGATGTCACTATGGTTGACGCCACCGATGGGCCTTTCGGAA
TGGCTTGTCGGTGCCAAAGAATGCGCTGCAAATGCAGCACGGAGTTGGCA
GGATGGTTTATACAAGCAGTATTTGCCTGAAAGTCACTGGATGGCACTCA
TAGTAATCTTAGCCGTCCTACTTTTGCCCTTAATCCTGAACATCTGGGGA
TGGATGCTTTGGATTCTTCTCTCGATCTTCCTGGGACTTTCCCGTACCGT
TTACTCCATTTTCACTGTGTTACATGTGTTGATGGACGTGTGGGCGCTTT
CAGTGATGAAAACGTGCTACACAATTTACCGCTTTCTCGCGGCGTTCCTT
CTTCCTCCGGCTGCGGCCTCCACACGTCAACGCCTACTGACTGCCCGCAA
TGTGACTCAATATCAAACCTTGGCCGAGCAAGTGGACGCTGAAGATGGCA
TGTTGAGCTGGCGTGCAGATGATTCTGATCTTCCGCAGTCGGTTACTATC
AAAAGTACGATCGCCAAGTTGGAAGAAAGTTTACAGGCCAAAGACACGAG
CAAGCTCCAGTTTATCCTCTTGAACGGTCTACTGAAAAGGAATCACCTCG
GCATTGACGAAAGGGATCTGCATATTCGGGCGTTGAGCGGATCGAAGCTT
CTGGTAGAGCGGTATGATAAGAAGGTGGTGGAATGCATCAAATATATCAC
TGAATGTCAAGAGCTAACGCGGGAGGAGAAAGTAATGTTTGTAAAGAAAG
CCCGTAGGGCGCTAGGACAGACGGCGCTCATGCTCTCAGGAGGGGGCAGC
ATAAGCATGTACCATGCAGGTAAATTCTATTCAAGTAGCCGAATGGGCGC
AGACCTTCATTGTGACCTTTCTTTGCCTTTTGAGTGGGAGGGGGAAATCT
TGGAGCGATCCTTGGGTAACACAGAGCCCTACAACGGTAGGACCTGGCCC
TTTCACCAACACAGTCGCAGACCTACAGATGGTGTGCCGGGGGGACGCTC
CGAACGTTACCCTACTTGCATTGCATGAAAGTGTCGTCCGCGCTTTGATT
ACGGAAGGCCTCTACAGGCATATCCGCGTCATTTCGGGCGCTTCCGGTGG
ATCCATCATTGCGGGGATGGCAGCGATCCACAATGAGAAGGAGCTCATGG
ATAGAGTGCTCGTGAAAGAGGTTTCCACCGACTTCAAACACAACGGCGAG
ATGCGACAGAAAAAGATTGTCTGGTTCCCTCCCCTCTTCGAGCAAGCCAA
GCATTTCATCAAAAATGGAATCTTGATTGACAACAAAGAATTCCAACGGA
CATGCGAATTTTACTATGGTTCCTTCACCTTTCAAGAGGCCTTTGAGCGG
ACTCACAAGCATGTGTGTATTTCAGTCGCTGCTTCCACTTTGGGGGCGAG
CAGTCAGGGAGGCCCCCGCCGTCTCCTTCTCAACCACATCACGACGCCCA
ACGTCCTGATTCGCAGTGCCGTTGCCGCTTCCTGTGCTTTGCCAGGCATC
ATGGCACCGAACTATTTGCAGTGCAAAGACGATCGGGGCCACGTGGTCCC
CTTCGATATGGACGGTGTGCAGTACGTCGACGGCTCTCTGCAGGCCGACT
TGCCTTTTCGACGAATTTCAACCCTCTTTGCCGTCTCACATTTTATCGTC
AGCCAAGTTAATTTTCACGTCGTGCCATTTCTAAGAAAAATGCACAGTCC
TGCTGAAAGCTCCTTATACTGGAAGCTTTTCCGCTTTTTCGACACGGACA
TCCGCCACCGCGTTACTTCTTTGGCTGAGCTAGGGCTTCTGCCGCGTGTC
TTTGGACAGGATTTATCGGGCATTTTTCGGCAAAGATACTCGGGTCATGT
GACCTTGACCCCCAGATTTCGCATGTCGGAAATGATTGGCCTCAAAGCGT
TCCAGAATCCGACCGAAGCGGAGATGCGACACTACATCTTGAATGGCAAG
CGGTCTGTTTGGCCGCACCTTCACCACATCAAGCACAACACATTGGTGGA
AAGGGTCCTTTCGGATTCTCTCAGTAAGCTCCGTCGTCAATCCTATTACT
TGGCCCTTGGCCAGCCGCACGCTGATAATAGCCCGGCAAGCTTGTCCCTC
CAGTGTGCCGTCCCCAGCGGCGGAGGCTCCAACGTGACGGGCGTCAATCC
CCTTTCAGGCATGGCCACGTGCGGGACCTGCTCGCCTCGGGTCGATACCA
ACTTTGCAAGCATGCTTCCCCCTCTGCCACCCACCAGCAATGCCATCAGC
CGCTGCAGTACCCCGCGCCGGTATCGCGATGAAGGAATTTTATCCACACC
CCTCCTAGTCACGGCTGGTGCTACTTTGCGGAGGAGCGACTCAGGTCGCT
TCGAGGACGATGACTCCGACATGCTCGAGCCCTCTGGAACGCCTTCCTCC
TCTGCCTGTGCCGCAACAGATACTCCTGCGAACGGAGGGGGCACAGGAAG
TACTGAGAATCAGCGGTTTGTGAGAAGTCCCGGACGCCAACATTTTAGGA
TTCAGCAGCTTCAGGCTGAAAATCGTGCATTAAGGGAACGGGTGCGTCTC
CTTCAACAGAGCATGGAAGCCCTTAAGAAAGCCGAATCCGGCCTATATGA
CCATGAAAATTTAGCCACCAGGCAAGAAAGCATCAAGGCCGGAAATCACA
GTAACCGATCTTCTCTGCAATCTGGCTTGAGCTACAGTGTTGCTTCGAGT
GGCAGTTATTCTGATCAAAGAGATTGCGAAACACCGAAAGCCGCCTTGCA
CATCTCTGATACTGTTGGCTTCGAAGAGACAGGTCCCGAAGGGCCACCGG
TCGTGGTAAAAAGTATTCCTTTAGTAGAATAAAAAGTCAAGTTACAGGAC
AGGTTGTACAAAGTCAAGTTTCCTCATGCATTTGCGCTGTATTTTTGTAT
CCATGACTACACAAAGAATGATAAAGTACAATCACAGAATTTTATAACTT
TGTTGTCCGGGACTATCTCTTCATGTCATGGAAAAGAAGTCGTCTCTACT
GAGCTTTTCTGATTTGCTATTACGAAATAAGTACT back to topprotein sequence of rna6027 >rna6027-protein ID=rna6027-protein|Name=rna6027|organism=Nannochloropsis gaditana|type=polypeptide|length=714bp
MNCVTFFSWNVAALRSLDKGSGISSNAASKNDWLGCKLAALGSPTFVCLQ
ETKISRDMLTEDVATLKHYHAFFAHTHRGVAQGGAYAGVVTYVSKHVGVH
AASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNF
EAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILR
KIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFT
VSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAAL
EQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSC
WCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGS
DHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRAR
QAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPS
LHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLT
HYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATK
SSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRR
HVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVR
GLVKKEKPSKTGDV back to topmRNA from alignment at CM002467.1:400047..402798- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6027 ID=rna6027|Name=rna6027|organism=Nannochloropsis gaditana|type=mRNA|length=2752bp|location=Sequence derived from alignment at CM002467.1:400047..402798- (Nannochloropsis gaditana)
CCCATCGCCTTCGGCTCGGGGGCCGCGAATCGCGTTCTTCTACTGATTCC
TTTTGTGAACCATCATTCTGACGCCTACAACAGGCATTACTGTTTGACAG
AAGTCGTGAATTTCCTATTAATCCTTTCGAGGACATCATTTTCGCTCCTG
CGTCAGAGGGTACCTTTCGACACACCCTGCCCCTGGCTCCTCGTGTCTGC
CCAACAGCCTTCCAGGGTATTTAAAAAGGTTTTACATTACAAACGCATTA
TCTACATACAGCAGAAGCTCTTTGGTTCCATGTGTTACACGGTGTCGGGA
TACATCCCGAGCTTTGGAATAGCGCGCTTCGCCCGTGTCCGGCGCCTACC
ACCCAGTCGGTAACCTCCTCTCGCTCTATCCTTCCACTATCTACACTGCA
TTTCGCGATGAATTGCGTGACATTTTTCAGCTGGAATGTTGCAGCACTTC
GATCTCTAGATAAAGGCTCGGGTATCTCGTCGAATGCGGCGTCTAAGAAT
GACTGGCTTGGATGTAAGCTCGCGGCCTTGGGTTCACCCACATTTGTCTG
CCTGCAGGAGACGAAAATATCGCGGGATATGTTGACCGAGGACGTGGCAA
CGCTCAAGCATTATCACGCCTTTTTTGCCCACACACATCGGGGTGTGGCA
CAAGGAGGAGCGTACGCTGGTGTGGTCACGTACGTGAGCAAGCATGTCGG
GGTGCATGCGGCCTCGGCGGGTTTGGTGTGCTGTGCTTATGAACGCCGGA
AGGGCCTGAATGACATCCCGAGCACAGTGGCTGGCAAAGCTTGCCCATTT
GAATGCGGAATTTTTCGACGCATTTTTGAGGAGATAGTCCACGAGTCAGA
CAATTTTGAGGCCGAGCCGGTCAAGGCTGAACAAAAGAGAAGTGCAGAAG
CCAGACGGAGCGATGGGGGAGACGCAGGCGAGGAAGAGGACTACGAAGGA
TGTATTTCGTCAGCTGAAGGAATTCTCAATATGATTCAGCCCGAAGATAT
ACTACGCAAAATAGACACAGAGGGACGTGTGGTCATGACGGACCACGGTC
ATTTTTTGCTTCTGAACGTGTACGCCCCGTTCAATGGCAGGCCGGGTCGC
GCTCGCTTCAAAAAAGCATTCAATGCTGCTCTTTTGGCTCGTATTATAGC
ATTCACGGTATCGGGACGCGAAGTGGTGCTTTGTGGGGACCTGAACGCTA
TCGCGGACGCAAAAGACTCGGTCGAGCGTCCCTCGGAGGAAGAGCTTGCG
GCTGCTCCATGGGCCCGGTGGATGCGCACGCTGCTTGGATCGCGCCAAGC
TGCCCTAGAACAAGCAAAGGGGGGGGGTAAAAGTAAGGACTCGCGGTGGG
AGTGGCTTCCGAATGAATGCATGAATTGGGAGTCTGCCCCGAGCTGGCCG
CTTCTGGTGGACACGTTTCGCGAGCTGCACCCTTTCCGGACCGACGCGTT
CTCCTGCTGGTGCAATCAGACGGCAGCGCGTCACACAAATTATGGGCGGC
GTATAGACTACATTCTTGCGTCACCGGGTCTGTGCGGCTACGCAGAGGGT
CCCGGTATCGTCGCCCACTTGGAGGAGGCGGCCGTCAGACAGGAGGTGCG
CGGCAGCGATCATTGTCCGGTGACTGCGCGCTTCTCTTTCTCAAAGCTTA
CAGATGGGTCATATCTTTCTTTGCCCTCTCCTTTTTCGGAGCGCGGTAGC
GGACGCATTCTTCTCCCCCCGCTTTGCACGGGTAACTACCCCGAATTTCG
AGCCCGACAGGCCGGCATTCACACATTTCTTCTGAAGCCATCGCTCAAAG
TGGCCACCACTCCCTATCCCAGTGGTTGTGTTGACCAAAGTTTCAGCAAC
GATTTCCTGCACGAAAAGCTTAAGGTTTGCGATCCGCTATCTCCGTCAGC
TCCCTCGCTTCATGCAAGCCACGAGGCTAGGGCTCGGCAGGGAGGCATGC
AAGGCTCTATGGTGAAGTGCGCACGCACCAGCACAATTGGGAGGAAGCGC
ACCAAATCCAAATCTTCTGCAGCTCAGGTGCCGACCAAATCACAGATGAC
TCTGACTCATTATGGCATTGCCAGCACCAGAGCCAAAGGGGGGGATGAGA
GCCGTGAAGCGACGGAGGAAAAGATGACCACTGGGACGTCCGCCTCCTTT
GTTTCTTCGAAAGCATTAGCGCGTGAGCAACACTCATCTACTTTGTATGC
TACCAAATCATCTTCTCTATCTTCATCTACCATGTCGGCTCCCCAGCCCG
GTGTCATGCTGGAAGCCACACGACGAGAGGTCTTTTTGAGTGCCTTCCGA
TCCCAGAGGGACAACACCCCACGATGTCAGGGTCATAATGAGCCCATGGT
CCGACGACATGTCAAAAAGGCAGATAGTGGCAACCTTGGAAGGTATTTTT
TCTGTTGTGCACGGCCTGTCGGCACAGATGGAGACAAAGAAGCGCGTTGC
AGAGATTTTCTATGGGAAGACAGTTTAGCAATGGGAGCAGGATTCCGGCG
TGTCCGCGGTCTGGTGAAAAAAGAGAAACCTAGCAAGACGGGCGATGTGT
AACCAGGTCTTTGAAGTGCTTGTGGCACGCTAGATGAAACAAGCATCAAG
AACGAGAAGTACACATCCGTGGCTTGACAGAAGAGTATCGCCTTGAACAA
GGATTTTAAAATGTGCATTTTTTCGGTACGCAAAAATAAAACGCAAATAG
CGAAATCTAAACTGTGCTGGTCAACTCCGTGTTTCAGGCTGGAGGTTGCT
CC back to topCoding sequence (CDS) from alignment at CM002467.1:400047..402798- >rna6027 ID=rna6027|Name=rna6027|organism=Nannochloropsis gaditana|type=CDS|length=2145bp|location=Sequence derived from alignment at CM002467.1:400047..402798- (Nannochloropsis gaditana)
ATGAATTGCGTGACATTTTTCAGCTGGAATGTTGCAGCACTTCGATCTCT
AGATAAAGGCTCGGGTATCTCGTCGAATGCGGCGTCTAAGAATGACTGGC
TTGGATGTAAGCTCGCGGCCTTGGGTTCACCCACATTTGTCTGCCTGCAG
GAGACGAAAATATCGCGGGATATGTTGACCGAGGACGTGGCAACGCTCAA
GCATTATCACGCCTTTTTTGCCCACACACATCGGGGTGTGGCACAAGGAG
GAGCGTACGCTGGTGTGGTCACGTACGTGAGCAAGCATGTCGGGGTGCAT
GCGGCCTCGGCGGGTTTGGTGTGCTGTGCTTATGAACGCCGGAAGGGCCT
GAATGACATCCCGAGCACAGTGGCTGGCAAAGCTTGCCCATTTGAATGCG
GAATTTTTCGACGCATTTTTGAGGAGATAGTCCACGAGTCAGACAATTTT
GAGGCCGAGCCGGTCAAGGCTGAACAAAAGAGAAGTGCAGAAGCCAGACG
GAGCGATGGGGGAGACGCAGGCGAGGAAGAGGACTACGAAGGATGTATTT
CGTCAGCTGAAGGAATTCTCAATATGATTCAGCCCGAAGATATACTACGC
AAAATAGACACAGAGGGACGTGTGGTCATGACGGACCACGGTCATTTTTT
GCTTCTGAACGTGTACGCCCCGTTCAATGGCAGGCCGGGTCGCGCTCGCT
TCAAAAAAGCATTCAATGCTGCTCTTTTGGCTCGTATTATAGCATTCACG
GTATCGGGACGCGAAGTGGTGCTTTGTGGGGACCTGAACGCTATCGCGGA
CGCAAAAGACTCGGTCGAGCGTCCCTCGGAGGAAGAGCTTGCGGCTGCTC
CATGGGCCCGGTGGATGCGCACGCTGCTTGGATCGCGCCAAGCTGCCCTA
GAACAAGCAAAGGGGGGGGGTAAAAGTAAGGACTCGCGGTGGGAGTGGCT
TCCGAATGAATGCATGAATTGGGAGTCTGCCCCGAGCTGGCCGCTTCTGG
TGGACACGTTTCGCGAGCTGCACCCTTTCCGGACCGACGCGTTCTCCTGC
TGGTGCAATCAGACGGCAGCGCGTCACACAAATTATGGGCGGCGTATAGA
CTACATTCTTGCGTCACCGGGTCTGTGCGGCTACGCAGAGGGTCCCGGTA
TCGTCGCCCACTTGGAGGAGGCGGCCGTCAGACAGGAGGTGCGCGGCAGC
GATCATTGTCCGGTGACTGCGCGCTTCTCTTTCTCAAAGCTTACAGATGG
GTCATATCTTTCTTTGCCCTCTCCTTTTTCGGAGCGCGGTAGCGGACGCA
TTCTTCTCCCCCCGCTTTGCACGGGTAACTACCCCGAATTTCGAGCCCGA
CAGGCCGGCATTCACACATTTCTTCTGAAGCCATCGCTCAAAGTGGCCAC
CACTCCCTATCCCAGTGGTTGTGTTGACCAAAGTTTCAGCAACGATTTCC
TGCACGAAAAGCTTAAGGTTTGCGATCCGCTATCTCCGTCAGCTCCCTCG
CTTCATGCAAGCCACGAGGCTAGGGCTCGGCAGGGAGGCATGCAAGGCTC
TATGGTGAAGTGCGCACGCACCAGCACAATTGGGAGGAAGCGCACCAAAT
CCAAATCTTCTGCAGCTCAGGTGCCGACCAAATCACAGATGACTCTGACT
CATTATGGCATTGCCAGCACCAGAGCCAAAGGGGGGGATGAGAGCCGTGA
AGCGACGGAGGAAAAGATGACCACTGGGACGTCCGCCTCCTTTGTTTCTT
CGAAAGCATTAGCGCGTGAGCAACACTCATCTACTTTGTATGCTACCAAA
TCATCTTCTCTATCTTCATCTACCATGTCGGCTCCCCAGCCCGGTGTCAT
GCTGGAAGCCACACGACGAGAGGTCTTTTTGAGTGCCTTCCGATCCCAGA
GGGACAACACCCCACGATGTCAGGGTCATAATGAGCCCATGGTCCGACGA
CATGTCAAAAAGGCAGATAGTGGCAACCTTGGAAGGTATTTTTTCTGTTG
TGCACGGCCTGTCGGCACAGATGGAGACAAAGAAGCGCGTTGCAGAGATT
TTCTATGGGAAGACAGTTTAGCAATGGGAGCAGGATTCCGGCGTGTCCGC
GGTCTGGTGAAAAAAGAGAAACCTAGCAAGACGGGCGATGTGTAA back to top
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