EWM24644.1, cds6012 (CDS) Nannochloropsis gaditana

Overview
NameEWM24644.1
Unique Namecds6012
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:400247..402391 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24644.1
Productdna-apurinic or apyrimidinic site lyase 2
Orig transcript idgnl|cribi|Naga_100055g27.7328.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:400247..402391 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004519endonuclease activity
GO:0003677DNA binding
GO:0004518nuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR020848AP_endonuclease_F1_CS
IPR004808AP_endonuc_1
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|585106166|gb|EWM24644.1| (dna-apurinic or apyrimidinic site lyase 2 [Nannochloropsis gaditana])

HSP 1 Score: 1483 bits (3838), Expect = 0.000e+0
Identity = 714/714 (100.00%), Postives = 714/714 (100.00%), Query Frame = 0
Query:    1 MNCVTFFSWNVAALRSLDKGSGISSNAASKNDWLGCKLAALGSPTFVCLQETKISRDMLTEDVATLKHYHAFFAHTHRGVAQGGAYAGVVTYVSKHVGVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV 714
            MNCVTFFSWNVAALRSLDKGSGISSNAASKNDWLGCKLAALGSPTFVCLQETKISRDMLTEDVATLKHYHAFFAHTHRGVAQGGAYAGVVTYVSKHVGVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV
Sbjct:    1 MNCVTFFSWNVAALRSLDKGSGISSNAASKNDWLGCKLAALGSPTFVCLQETKISRDMLTEDVATLKHYHAFFAHTHRGVAQGGAYAGVVTYVSKHVGVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV 714          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|553189649|ref|XP_005855045.1| (AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526] >gi|553195371|ref|XP_005856133.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526] >gi|422292922|gb|EKU20223.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526] >gi|422294015|gb|EKU21315.1| AP endonuclease 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1280.39 bits (3312), Expect = 0.000e+0
Identity = 617/617 (100.00%), Postives = 617/617 (100.00%), Query Frame = 0
Query:   98 GVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV 714
            GVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV
Sbjct:    1 GVHAASAGLVCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHGHFLLLNVYAPFNGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWEDSLAMGAGFRRVRGLVKKEKPSKTGDV 617          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|919004815|ref|XP_013381669.1| (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Lingula anatina])

HSP 1 Score: 174.096 bits (440), Expect = 6.454e-43
Identity = 144/510 (28.24%), Postives = 215/510 (42.16%), Query Frame = 0
Query:  199 LRKIDTEGRVVMTDHG---------HFLLLNVYAPFNG--RPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIAST----RAKG----GDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPR---CQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            L+ +D EGRV++T H             ++NVY P     R  R  FK+ F   L  R  A   +G  V++ GDLN      D  +   +EE  A P  +W+   L     A E A+      DS                +  + VDTFR   P   +AF+CW   T AR TNYG RIDYILAS  LC      G+V    +  +R ++ GSDHCPV A  +   +    Y                 PP+CT   PEF  +Q  +  F  K    V    + S  + +S +  F  E  +  + ++ +       H+   R        +   R + +  K+T  KS       K Q +L ++ ++ T    + KG    G E+R   E+ +    ++    + +      +S++  ++S SL SS  S   P       + +    A+++     P+   C+GH EP V R VKK +  N GR F+CCARP G   +  ARC  F W
Sbjct:  113 LQSLDNEGRVIITQHKIRAEESKEELLTIINVYVPRADPEREDRQVFKQRFCQLLQTRAEALVHAGSHVIILGDLNISHRQIDHCDPVEKEEFDARPSRKWLNAFLKPIGTAAEPAQDVEADTDS--------------IVTGGIFVDTFRYFRPNEKNAFTCWNTSTGARQTNYGTRIDYILASADLC-----EGLV---RDCVIRPDIEGSDHCPVKAELTCDIVQSAKY-----------------PPICTKFMPEFSGKQQKLSEFFSK---SVKEPKHTSVELVKSEATIFKEEFCEKDESVTDARTITEVKHKTETR--------LLSKRAAPLLMKQTSKKSKMHDRKGK-QSSLMNFFVSKTITPAKEKGSLDSGIENRTCIEDGIFLSQNSDGEGTYSSQESNETSSVTYSESISLHSSQESNETPSSQETINKSQNLKDAWKTMLKGPPKPPSCKGHKEPCVLRTVKK-EGVNFGRQFWCCARPQGHASNPLARCEHFEW 570          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|919003427|ref|XP_013417725.1| (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Lingula anatina])

HSP 1 Score: 170.629 bits (431), Expect = 1.114e-41
Identity = 142/510 (27.84%), Postives = 216/510 (42.35%), Query Frame = 0
Query:  199 LRKIDTEGRVVMTDHG---------HFLLLNVYAPFNG--RPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIAST----RAKG----GDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPR---CQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            L+ +D EGRV++T H             ++NVY P     R  R  FK+ F   L  R  A   +G  V++ GDLN      D  +   +EE  A P  +W+   L     A E A+      DS                +  + +DTFR   P   +AF+CW   T AR TNYG RIDYILAS  LC      G+V   ++  +  ++ GSDHCPV A  + + +    Y                 PP+CT   PEF  +Q  +  F  K    V    + S  + +S +  F  E  +  + ++ +       H+   R        +   R + +  K+T  KS       K Q +L ++ ++ T    + KG    G E+R   E+ +    ++    + +      +S++  ++S SL SS  S   P       + +    A+++     P+   C+GH EP V R VKK +  N GR F+CCARP G   +  ARC  F W
Sbjct:  113 LQSLDNEGRVIITQHKIRAAEGREELLTIINVYVPRADPEREDRQVFKQRFCQLLQTRAEALVHAGSHVIILGDLNISHRQIDHCDPVEKEEFDARPSRKWLSAFLKPIGTAAEPAQDVEADTDS--------------IVTGGIFLDTFRYFRPNEENAFTCWNTSTGARQTNYGTRIDYILASADLC-----EGLV---KDCVIWPDIEGSDHCPVKAELTCNIVQSAKY-----------------PPICTKFMPEFSGKQQKLSEFFSK---SVKEPKHTSVELVKSEATIFKEEFCEKDESVTDARTITEVKHKTETR--------LLSKRAAPLLMKQTSKKSKMHDRKGK-QSSLMNFFVSKTITPAKEKGSLDSGIENRTCVEDGIFLSQNSDGEGTYSSQESNETSSVTYSESISLHSSQESNETPSSQETINKSQNLKDAWKTMLKGPPKPPSCKGHKEPCVLRTVKK-EGVNFGRQFWCCARPQGHASNPLARCEHFEW 570          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|1199327924|ref|XP_021178793.1| (DNA-(apurinic or apyrimidinic site) lyase 2 [Fundulus heteroclitus])

HSP 1 Score: 169.088 bits (427), Expect = 4.552e-41
Identity = 185/710 (26.06%), Postives = 274/710 (38.59%), Query Frame = 0
Query:    4 VTFFSWNVAALRSLDKGSGISSNAASKNDWLGCKLAALGSPTFVCLQETKISRDMLTEDVATLKHYHAFFAHTHRGVAQGGAYAGVVTYVSKHVGVHAASAGL--VCCAYERRKGLNDIPSTVAGKACPFECGIFRRIFEEIVHESDNFEAEPVKAEQKRSAEARRSDGGDAGEEEDYEGCISSAEGILNMIQPEDILRKIDTEGRVVMTDHG--------HFLLLNVYAPF--NGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLL-GSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQV-------PTKSQMTLTHYGIASTRAKGGDESREATEEKMT-TGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQP------GVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            +   +WN+  +R+   G   + +    +               +C+QETK++RD+L E  A +  Y+++F+++ RG +    Y+GV TY   +    AA  GL  +   +ER  G                             +  +F +E ++            + G AGEE                      L+ +D EGR V+T H            ++NVY P     +P R RFK  F   L +R  A    G  V++ GD+N      D  +    ++ A  P  +W+   L GS Q    +     + K+S       +C            VD FR  HP RT+AF+CW   T AR TNYG RIDYI A   L               A +  EV GSDHCPV AR + S L          P S+        PPLCT   PEF  +Q  +  FL    +KV   P  SG  +    +    E+ +  +P       +HA   +R ++     S     + S       K++ +             + + T    G  S R+   D    AT E  + TG+          A  Q  ++    ++     +   APQP      GV   A+   VF  +        P C+ H EP V R VKK +  N+G+ FF C RP G   + EARC  F+W
Sbjct:    1 MKLVTWNINGIRTFKSGIKKALDGLDAD--------------IICVQETKVTRDLLDERTAIVDGYNSYFSYS-RGRS---GYSGVATYCRDNATPSAAEEGLTGLLTNHERAVG--------------------------CYGDQADFSSEELQL---------LDNEGRAGEE----------------------LQLLDNEGRAVITQHKIMCQDKERTVTVINVYCPRADPDKPERKRFKLQFYKLLQSRAEALLRGGSHVIILGDVNTSHRPIDHCDPSDIDDFAENPGRKWLNGFLYGSSQEEEVEPDDEEQDKESAI----TDCGQMGK------FVDMFRYFHPTRTNAFTCWSTLTGARQTNYGTRIDYIFADRRLA--------QQQFAGADIMPEVEGSDHCPVWARLTCSLL----------PGSKP-------PPLCTRYLPEFAGKQQKLSRFL----VKVDQKPSQSGPKEALPGSQEEDERRENRNP-------IHADDVSRKKRSSAPESAAPKGKKSKTTNASLKARGNLLSFFKPKLTDVAQCENTPGADGFTSPRS---DPKAPATSEPCSGTGSPTEDTELVVDAPSQLCASSTTGETERTVKTKQPAPQPLSVGQTGVKKGAS--SVFWKSVLHGPPPAPCCKVHREPCVLRTVKK-EGPNMGKQFFVCGRPQGHASNPEARCNFFMW 583          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|1191027480|ref|XP_020912274.1| (DNA-(apurinic or apyrimidinic site) lyase 2-like [Exaiptasia pallida])

HSP 1 Score: 159.458 bits (402), Expect = 3.390e-38
Identity = 137/506 (27.08%), Postives = 203/506 (40.12%), Query Frame = 0
Query:  197 DILRKIDTEGRVVMTDHG-----HFLLLNVYAPF--NGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWP--------LLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCV-DQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            D L  +D EGR ++T+H        +++N Y P   +    R  FK  +   L  R+ A   SGR V++ GDLN      D+ +    +   A P   WM   +     + ++      S+ ++   L    +  E  P            LVD+FR +HP + DA++ WC  T AR TNYGRR+DYILA   L        I     +  +R+EV GSDHCPV A      L  G ++    P           P LCT   PEF  +Q  + ++  K   KV   P     + ++      +  K+K  +    +  +     + R +   +Q       +++ I      S+  +  +P   Q T +     S R    + S  A       G   S +S K++ R+            SL  + +  P P                       P C GH EP V R VKK    N GR FFCCARP G   +K+ARC+ F W
Sbjct:   67 DQLSCLDKEGRTILTEHQLDNKEKLVIINTYCPRADSDNEERMDFKMQYYKLLQIRVEALIESGRHVIVLGDLNLTHKPIDNCDPGDLKIFNAHPSRVWMNQFVKEITLSBKRIVHKETSECTQTINLEKHAIKTEEKPDRQAKQVSLEGTLVDSFRYIHPNQRDAYTNWCTSTGARQTNYGRRLDYILADILL--------IKQKFLDVIIRREVEGSDHCPVVA------LLSGQFIPAQRP-----------PGLCTRFMPEFSGKQQKLASYFNK---KVVVQPLKEQRLREEEKETKLVTTKVKRANNFGGNPQAKRVKSQPRQQNSLLQ---FFGKKSNPISSNFNYSEQESDSLPNSPQSTASMNSSDSQRT-SRESSPSAFPNSTENGLPTSEISPKSVNRKAE---------VSLWKNILKGPPPA----------------------PLCPGHEEPCVLRTVKKK-GPNFGRQFFCCARPEGHVTNKDARCKFFKW 508          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|999980716|gb|KXJ19890.1| (DNA-(apurinic or apyrimidinic site) lyase 2 [Exaiptasia pallida])

HSP 1 Score: 159.458 bits (402), Expect = 7.310e-38
Identity = 137/506 (27.08%), Postives = 203/506 (40.12%), Query Frame = 0
Query:  197 DILRKIDTEGRVVMTDHG-----HFLLLNVYAPF--NGRPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWP--------LLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCV-DQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            D L  +D EGR ++T+H        +++N Y P   +    R  FK  +   L  R+ A   SGR V++ GDLN      D+ +    +   A P   WM   +     + ++      S+ ++   L    +  E  P            LVD+FR +HP + DA++ WC  T AR TNYGRR+DYILA   L        I     +  +R+EV GSDHCPV A      L  G ++    P           P LCT   PEF  +Q  + ++  K   KV   P     + ++      +  K+K  +    +  +     + R +   +Q       +++ I      S+  +  +P   Q T +     S R    + S  A       G   S +S K++ R+            SL  + +  P P                       P C GH EP V R VKK    N GR FFCCARP G   +K+ARC+ F W
Sbjct:  123 DQLSCLDKEGRTILTEHQLDNKEKLVIINTYCPRADSDNEERMDFKMQYYKLLQIRVEALIESGRHVIVLGDLNLTHKPIDNCDPGDLKIFNAHPSRVWMNQFVKEITLSBKRIVHKETSECTQTINLEKHAIKTEEKPDRQAKQVSLEGTLVDSFRYIHPNQRDAYTNWCTSTGARQTNYGRRLDYILADILL--------IKQKFLDVIIRREVEGSDHCPVVA------LLSGQFIPAQRP-----------PGLCTRFMPEFSGKQQKLASYFNK---KVVVQPLKEQRLREEEKETKLVTTKVKRANNFGGNPQAKRVKSQPRQQNSLLQ---FFGKKSNPISSNFNYSEQESDSLPNSPQSTASMNSSDSQRT-SRESSPSAFPNSTENGLPTSEISPKSVNRKAE---------VSLWKNILKGPPPA----------------------PLCPGHEEPCVLRTVKKK-GPNFGRQFFCCARPEGHVTNKDARCKFFKW 564          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|548364927|ref|XP_005731711.1| (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pundamilia nyererei])

HSP 1 Score: 158.303 bits (399), Expect = 1.805e-37
Identity = 148/526 (28.14%), Postives = 216/526 (41.06%), Query Frame = 0
Query:  199 LRKIDTEGRVVMTDHG--------HFLLLNVYAPFNG--RPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPL----LVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVA------TTP------------YPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGR-KRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRR---EVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWED 688
            L+ +D EGR V+T H            ++NVY P     +P R RFK  F   L +R  A    G  V++ GD+N      D  +    ++    P  +W+   L S               D + E    E  + E   + PL     VDTFR  HP R +AF+CW   T AR TNYG RIDYI A    C  A+          A +  EV GSDHCPV  + S       S +S P P           PP CT   PEF  +Q  +  FL+K   K A      T P             PSG  + S     L   L    P      +++AS + +       G+++   +T  + + ++  +   AA+ P   ++    + +A T+++G +   + + ++ +T  +           +QH +T +            S PQP V     ++    VF  +        P C+ H EP V R VKK +  N+G+ FF CARP G   + EARC  F W D
Sbjct:  110 LQLLDNEGRAVITQHKIKCQDKEKTLTVINVYCPRADPEKPERKRFKLQFYNLLQSRAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFLYS---------------DKQEEGSDEEEHDKECEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGTRIDYIFAD---CQLAK-----EQFVGADIMPEVEGSDHCPVWGQLSC------SLISSPKP-----------PPFCTRYLPEFAGKQQKLSRFLVKVDQKSAQSEQKNTLPGSQEEEERRENLNPSGAANISVKKRSLTSDLVA--PKGKKTKTVNASSKPK-------GNLLAFFKTKNVNQCEKPLNLDEAAKPPITEEV----FSVADTKSEGPELISDGSSQQCSTADT-----------DQHMNTEH------------SIPQPTVTQSDAKKGTSSVFWKSVLRGPPAPPCCKVHEEPCVLRTVKK-EGPNMGKQFFVCARPQGHASNPEARCNFFAWVD 558          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|498966377|ref|XP_004546404.1| (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Maylandia zebra] >gi|554840705|ref|XP_005930777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Haplochromis burtoni])

HSP 1 Score: 157.918 bits (398), Expect = 1.893e-37
Identity = 148/526 (28.14%), Postives = 216/526 (41.06%), Query Frame = 0
Query:  199 LRKIDTEGRVVMTDHG--------HFLLLNVYAPFNG--RPGRARFKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQAKGGGKSKDSRWEWLPNECMNWESAPSWPL----LVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVA------TTP------------YPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGR-KRTKSKSSAAQVPTKSQMTLTHYGIASTRAKGGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRR---EVFLSAFRSQRDNTPRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLWED 688
            L+ +D EGR V+T H            ++NVY P     +P R RFK  F   L +R  A    G  V++ GD+N      D  +    ++    P  +W+   L S               D + E    E  + E   + PL     VDTFR  HP R +AF+CW   T AR TNYG RIDYI A    C  A+          A +  EV GSDHCPV  + S       S +S P P           PP CT   PEF  +Q  +  FL+K   K A      T P             PSG  + S     L   L    P      +++AS + +       G+++   +T  + + ++  +   AA+ P   ++    + +A T+++G +   + + ++ +T  +           +QH +T +            S PQP V     ++    VF  +        P C+ H EP V R VKK +  N+G+ FF CARP G   + EARC  F W D
Sbjct:  110 LQLLDNEGRAVITQHKIKCQDKEKTLTVINVYCPRADPEKPERKRFKLQFYNLLQSRAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFLYS---------------DKQEEGSDEEEHDKECEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGTRIDYIFAD---CQLAK-----EQFVGADIMPEVEGSDHCPVWGQLSC------SLISSPKP-----------PPFCTRYLPEFAGKQQKLSRFLVKVDQKSAQSEQKNTLPGSQEEEERRENLNPSGAANISVKKRSLTSDLVA--PKGKKTKTVNASSKPK-------GNLLAFFKTKNVNQCEKPLNLDEAAKPPITEEV----FSVADTKSEGPELISDGSSQQCSTADT-----------DQHMNTEH------------SIPQPTVTQSDAKKGTSSVFWKSVLRGPPAPPCCKVHEEPCVLRTVKK-EGPNMGKQFFVCARPQGHASNPEARCNFFAWVD 558          
BLAST of EWM24644.1 vs. NCBI_GenBank
Match: gi|961113644|ref|XP_014779818.1| (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Octopus bimaculoides] >gi|918305711|gb|KOF77951.1| hypothetical protein OCBIM_22031497mg [Octopus bimaculoides])

HSP 1 Score: 157.918 bits (398), Expect = 2.294e-37
Identity = 150/523 (28.68%), Postives = 218/523 (41.68%), Query Frame = 0
Query:  196 EDILRKIDTEGRVVMTDH---------GHFLLLNVYAPFNGRPGRAR--FKKAFNAALLARIIAFTVSGREVVLCGDLNAIADAKDSVERPSEEELAAAPWARWMRTLLGSRQAALEQA-KGGGKSKDSRWEWLPNECMNWESAPSWPLLVDTFRELHPFRTDAFSCWCNQTAARHTNYGRRIDYILASPGLCGYAEGPGIVAHLEEAAVRQEVRGSDHCPVTARFSFSKLTDGSYLSLPSPFSERGSGRILLPPLCTGNYPEFRARQAGIHTFLLKPSLKVATTPYPSGCVDQSFSNDFLHEKLKVCDPLSPSAPSLHASHEARARQGGMQGSMVKCARTSTIGRKRTKSKSSAAQVPTK-SQMTLTHYGIASTRAK-GGDESREATEEKMTTGTSASFVSSKALAREQHSSTLYATKSSSLSSSTMSAPQPGVMLEATRREVFLSAFRSQRDNT------------------PRCQGHNEPMVRRHVKKADSGNLGRYFFCCARPVGTDGDKEARCRDFLW 686
            +D L  +D EGR V+T H             ++NVY P        R  FK  F A L  R  A   SG  V++ GDLN      D  E  SE    + P   W+  +L  +Q   E + K     KD++            +  +    VDTFR LHP + +A++ WC  T AR TN+GRR+DYIL +  L        I+A+++         GSDHCPV A F+FS +T                  +  P  C    PEF  +Q  +  F  K   K +T        D S +N+ +                  AS E + ++     S+ K   + ++G ++ K KS     P + + M   +   +S   + G + S E  E K +  TS+       L+  Q  +T   + SS L  S+ +  Q   +LEA + E+ +S  +S  D T                  P C GH+EP V R VKK      GR F+ C+RP G   ++EARC  F W
Sbjct:  109 KDELDALDAEGRTVITQHEIRNPDGSCSQMAIINVYCPRYDSENEERHSFKLRFFALLQTRAEALIESGSHVIILGDLNTTHQNMDHCEPDSEGGSHSIPSRCWLNQMLCHKQQTDELSDKSDLHDKDTQ-----------PATVTGGHFVDTFRYLHPDQLEAYTNWCTLTGARQTNFGRRLDYILCNERLNSALTSCCIMANID---------GSDHCPVKASFNFSVVT-----------------ALKAPSHCAKFMPEFAGKQQKLSMFFTKSYGKPST--------DMSGNNNIVQHS---------------ASTEWKDKRKHSPHSL-KRQSSESLGSQKKKGKSCLENKPKQINLMGFFNKKPSSCPGQLGRNSSSELDEFKNSKKTSSDDSDINDLSESQEVTT-EPSISSHLEISSKNV-QDSSLLEADKEELIVSKVKSTTDQTSNSQVLAWKNLLKGPPPAPLCPGHSEPCVLRTVKKPGPTQ-GRQFYTCSRPDGAANNQEARCNFFKW 567          
The following BLAST results are available for this feature:
BLAST of EWM24644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106166|gb|EWM24644.1|0.000e+0100.00dna-apurinic or apyrimidinic site lyase 2 [Nannoch... [more]
gi|553189649|ref|XP_005855045.1|0.000e+0100.00AP endonuclease 2, partial [Nannochloropsis gadita... [more]
gi|919004815|ref|XP_013381669.1|6.454e-4328.24PREDICTED: DNA-(apurinic or apyrimidinic site) lya... [more]
gi|919003427|ref|XP_013417725.1|1.114e-4127.84PREDICTED: DNA-(apurinic or apyrimidinic site) lya... [more]
gi|1199327924|ref|XP_021178793.1|4.552e-4126.06DNA-(apurinic or apyrimidinic site) lyase 2 [Fundu... [more]
gi|1191027480|ref|XP_020912274.1|3.390e-3827.08DNA-(apurinic or apyrimidinic site) lyase 2-like [... [more]
gi|999980716|gb|KXJ19890.1|7.310e-3827.08DNA-(apurinic or apyrimidinic site) lyase 2 [Exaip... [more]
gi|548364927|ref|XP_005731711.1|1.805e-3728.14PREDICTED: DNA-(apurinic or apyrimidinic site) lya... [more]
gi|498966377|ref|XP_004546404.1|1.893e-3728.14PREDICTED: DNA-(apurinic or apyrimidinic site) lya... [more]
gi|961113644|ref|XP_014779818.1|2.294e-3728.68PREDICTED: DNA-(apurinic or apyrimidinic site) lya... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6027rna6027Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications