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Properties
| Property Name | Value |
|---|
| Product | Tetratricopeptide-like helical protein |
| Orig transcript id | gnl|cribi|Naga_100055g32.7344.mrna |
| Orig protein id | gnl|cribi|Naga_100055g32.7344 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:389801..392686 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6022 ID=rna6022|Name=rna6022|organism=Nannochloropsis gaditana|type=mRNA|length=1201bp
CCTACCAACGTCACTCTTTCACCACCCTGTGCCACAAACAGGTCGTCAGT
CCTCACATGACAAGGCGGCGCTTTTCCGTCAACAAATCTTCCATCACCTA
TTTCACGTGGTGCTTCCTCTTCCTTTCCAATTCATTGGCACGTGCCGTTC
TCTGTGGCATGCTTCAATCCCCAACTACAGCTTTCTTCTTCCCTCTCCGA
CCTGCGGTGTTGCGCGGCCGGACCGTTGTCGTCAGCTCCCTCACTCGACA
CCAACGTTTGCATAGCTTTGCCACCATGAATTGTGGTACAGTAGGAGAGA
ATCTAGCGAGGGTTCGACACCGTGTCAAGGAGGTGGCCAAGGGCCTAGAA
CCTCCCCCTCGTTTGGTGGCAGTTAGCAAGACCAAGCCTGTTGCTGCTTT
GAAAGAAGCTTACGATGCTGGACAGCGACATTTTGGAGAAAATTATTCCC
ATGAGGTATTAGAGAAGGCGCCTGAGCTCCCAGATGACGTGAAGTGGCAC
TTCATCGGGCATTTGCAATCCAATAAGGCCAAGGCGTTGGTGGAGCAGGT
TCCAAACCTGTGGATGGTGGAGGCAGTCGACTCGATCAAGCTTGCTGACC
GCCTTCAAGCCGCAACAGCTGGTGTACTTGAAACAAGACGCAAGGGAGAG
CGTCTTAAGATCCTGGTGCAAATTGACACGAGTGGGGAAGCTACCAAGTC
GGGAAAGAGGACAGAGGACGCCGCAGTTATAGCCCAGCATGTGACGGCGC
AATGCCCCGCCCTCCAGTTTGCGGGTGTCATGACTATCGGCGCTTCCGGT
GACATGACTTGTTTCGATAAGCTGGTCGATGCACGAGAAGCGATTGCGCG
TGCCACAGGACTTGACGCCGCGTCCCTCGAGCTGAGTATGGGCATGTCTA
ATGACTTCGAAGAGGCCATCGCGCGCGGAAGCACCAATATTCGTGTGGGC
AGTACAATATTTGGAGCAAGGCAGTATAGGTCGAAGGAAGAACCGCCTGT
TGCAGAATATAATGAAGGAGAGTCAAAATCGAAATGATTGTGTGCAACAG
AATACTTGAAAGAATAAAGAATCAGAGCTAATGGTGCAGGAAAACTCCGT
GCTGCCAGAGGTGTAGCGTTTAAGATTGTGTGCTGACTTAGAGTTCACAT
CGTGCTTGTTTTACCAACAAGGGCACTTCACGGTCTTTTGGGATCTTCAG
C back to topprotein sequence of rna6022 >rna6022-protein ID=rna6022-protein|Name=rna6022|organism=Nannochloropsis gaditana|type=polypeptide|length=785bp
MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSP
AFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGD
DRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLR
RHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQG
DGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGG
HGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSK
MRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFL
KNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHP
FLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMP
YEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLE
KNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLW
DRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELE
PHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFT
EDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQN
EYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKL
APNDVLIRRKLETCRQIVKARKARESRAYASFFSP back to topmRNA from alignment at CM002467.1:389801..392686+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6022 ID=rna6022|Name=rna6022|organism=Nannochloropsis gaditana|type=mRNA|length=2886bp|location=Sequence derived from alignment at CM002467.1:389801..392686+ (Nannochloropsis gaditana)
AATGCCATGTACATTTTTTCTACCAAATAATGTAGATAAGAAGACGTCCG
TTTAAAACTTTCCCATGAGTATCAAACCCACGTGGGAAGCATTCGCGGAC
TGTCCCTCAACCCTCTTTTCACCGCAAAACCGAAGTGCCAGTATCCTTAG
AAAACGTGAAATATATGGCCAATTGCGACGTCGGGATGCGACTGATTCAG
CAGCCTACTCTCCAGCTTTTACCCCTTTCGATGTGCGACGCCTCGGATTC
GTCGGTCGGGCATCTCACAAACGAAGTTGGCTGAACAGTGTGCTGAAACA
TGACGGGTGCGTGAACACGGCGTGCTGGAGTGAGGACGGACGAATACTCT
TTACAGCAGGCGACGACAGGGATATAAAAATATGGCTTGCCACCTATGAC
TTTAGTGCCCAGGGAGTCGTAGCGAGCGGCCACTCTGCGAATATATTTGG
AGTCCAAGTGCCTCCAAACCGACCTGATGAGCTCGTGACTTGCGCCGCGG
ATGGTACTCTACGGAGACATCAGATAGATTGCAATCATCCTGTAATTGCA
GGTCATGTAGTTGGGACGTCATGCGCGCCGCACGTGATGCATGGCTTCTC
CttctgggaggggggatccgactcagggggagggcgtggacaaATTATTC
TGACAGCCCAGGGCGATGGCCTAGTCATGATGTACGACTTGCGGGAGCAA
TGTAGCGCTGGGCGGGCTATGTACAGACGACAAGTCCCTGTAAAGGCGGT
GGTTACGCCCCCTGTTCATAACACTGCCAGTGGCGTGTCGGCTTTCATGA
TGTACTTAGGAGGGCACGGCGCCACTCTGGAAGCGCACGATCTTCGTCGC
TTGCCCCGCACAGGATCAAAACCTGTTCAGATCTACCGTCCACAAGGCCT
ACCGCGGCACCTCGACGAGGACTTCCAGGAGAATGTGAGTCTGAGCGGTT
TGGCGTTCTCCAAAATGCGGGGAGAAGTGTTGGCCTCCTACCAGGGGGAC
CAGATCTACGGCTTTGCCACGGCTTGCTATGAAGAGAGACGCATTGCACA
GGAAGATCGTGCTTCGATGGAGGCGTGGTCGTTGGGAGGACACGTTAATT
GTCAGACATTCCTAAAAAATGTTACATACTTTgggccggcggaggagtaC
ATCGCTTGTGGGGATGACAGTGGCCACAGCTTTTTGTGGGACAGGCGGAC
GGGAATGCTGGTGAACGCCATACGAACCGACCTTTCTGTTGCGAACGGAT
GTGTGTCacacccctttctccctatGCTGGCGTGTTATGGTATAGATGAC
ACGGTGAAAGTGTTGGCGGTCGGCGGCCGCTATCGCCAGCCCGAGGGTGC
GAACGGGGATGACTTCGTAGAAGAGGACAGTGATAATGGATGGCAGGACA
CTCACAGAATGCCATATGAAGCACAACGACGCGAaatgggaagagggagt
gacGGCACTGCACCGGAATACCGTAATTTAAGGGGCAGCAGACGCCCCCG
GTCACGGTCAAACCTGCATCGGACAGAACTGCCTCCAAATCAATATTTTG
CGCAACTTTTGGAAAAAAACTTAAATAAAGTCATAGCCATAGACGCTCCC
AAGCCGTTGCGAGTCGTGTATGACTTTAATCGGTTTTGTCATCACGTGCG
ACGCATCCGCAAGTTTCTGATCAATCCCAATGAATGCCTGCCAGATTACC
CAAGTGATTTGTGGGACCGACAACTTTCTCTTGAAGAATTGAAAGGTCTG
TTGATGGccttgaaggagaaggggaaccTGTCTTTCAAGAAGATGGAATA
TCGCATAGCTGCGGCAAGCTATGGTAAAATTTTGAATTGGCTTTTCTCTT
CCGCTGAATTAGAACCGCACATCCGAATGACACGTGAAGAAAATTTTAAA
CTGTGGAATGGCGACGACTATGAAGATGCGCCCGTAGTTTTTTTTGGAAC
TCTACTGCCGCCACACGCCCGACAACGAGAAAGAATAAATGCCATCTTGG
CAGGAAATTTCACGGAGGATGGAGCTAACATCGCTGTAGAAGCGGTCGAA
AGAAAGAGTGACGCGAACGCTgcatccatttcctcccaagctgtgaagga
ggagctaATGGATTTGCTGGTGTCGTCTTTGCTGAACTTGGCGATGGCAG
TCTTAAAGCAAAACGAATACAAGCGTGCCATAAAATTATGTACCCTGGCA
ATCCGACACCGGCCTTTCGATGCTAAAGCGTATTACAGGAGAGGTAGCGC
CGCATTAGAGCTAGGTGACGACTATGAGGCTGGCACGAAGGACCTTATTA
AAGCATGTAAACTGGCACCTAATGACGTACTAATTCGGCGCAAGTTAGAG
ACGTGCCGGCAAATTGTGAAGGCGCGAAAAGCTCGAGAATCCCGGGCATa
tgcctctttcttctctccttgaTGTGAAAATCGAGGGTGATATAAATTGC
AAAGTCCAAGCACGTTGGGTTGAATATTGAAAGAGATTGTTTTCAACCAC
AGTCCAAAAAACCAGAAATGTCAGAAGACTGCAGAAGAATAAcaagagca
agaaaaaaCTATTTTGTCAACCACAGTCCAAAAAACCAGAAAAGTCAAAA
GACTGCAGAAGAATAAcaagagcaagaaaaaaCTATTTTGTGGACGCAAA
GTTAAATTTAGTTGATACTTAGTATTTAGACTTTTATCATCTCAAAAGGC
GTCTTTCCTTCAAAATCAGAGAATCGACGATAGGAGTGCAATGCTCGAAG
GGAGGAATTTTTCAATCGCGCACCCGTCCACTTGAGACTAGATTAAGAGC
GTCAGTAGACACATGTTTACACGTCGTTCGATGTCCACTTGCATAGCGTA
CCATTCCCGTCTTTCTCACCAGCGTTTTGGACCATC back to topCoding sequence (CDS) from alignment at CM002467.1:389801..392686+ >rna6022 ID=rna6022|Name=rna6022|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002467.1:389801..392686+ (Nannochloropsis gaditana)
ATGAGTATCAAACCCACGTGGGAAGCATTCGCGGACTGTCCCTCAACCCT
CTTTTCACCGCAAAACCGAAGTGCCAGTATCCTTAGAAAACGTGAAATAT
ATGGCCAATTGCGACGTCGGGATGCGACTGATTCAGCAGCCTACTCTCCA
GCTTTTACCCCTTTCGATGTGCGACGCCTCGGATTCGTCGGTCGGGCATC
TCACAAACGAAGTTGGCTGAACAGTGTGCTGAAACATGACGGGTGCGTGA
ACACGGCGTGCTGGAGTGAGGACGGACGAATACTCTTTACAGCAGGCGAC
GACAGGGATATAAAAATATGGCTTGCCACCTATGACTTTAGTGCCCAGGG
AGTCGTAGCGAGCGGCCACTCTGCGAATATATTTGGAGTCCAAGTGCCTC
CAAACCGACCTGATGAGCTCGTGACTTGCGCCGCGGATGGTACTCTACGG
AGACATCAGATAGATTGCAATCATCCTGTAATTGCAGGTCATGTAGTTGG
GACGTCATGCGCGCCGCACGTGATGCATGGCTTCTCCttctgggaggggg
gatccgactcagggggagggcgtggacaaATTATTCTGACAGCCCAGGGC
GATGGCCTAGTCATGATGTACGACTTGCGGGAGCAATGTAGCGCTGGGCG
GGCTATGTACAGACGACAAGTCCCTGTAAAGGCGGTGGTTACGCCCCCTG
TTCATAACACTGCCAGTGGCGTGTCGGCTTTCATGATGTACTTAGGAGGG
CACGGCGCCACTCTGGAAGCGCACGATCTTCGTCGCTTGCCCCGCACAGG
ATCAAAACCTGTTCAGATCTACCGTCCACAAGGCCTACCGCGGCACCTCG
ACGAGGACTTCCAGGAGAATGTGAGTCTGAGCGGTTTGGCGTTCTCCAAA
ATGCGGGGAGAAGTGTTGGCCTCCTACCAGGGGGACCAGATCTACGGCTT
TGCCACGGCTTGCTATGAAGAGAGACGCATTGCACAGGAAGATCGTGCTT
CGATGGAGGCGTGGTCGTTGGGAGGACACGTTAATTGTCAGACATTCCTA
AAAAATGTTACATACTTTgggccggcggaggagtaCATCGCTTGTGGGGA
TGACAGTGGCCACAGCTTTTTGTGGGACAGGCGGACGGGAATGCTGGTGA
ACGCCATACGAACCGACCTTTCTGTTGCGAACGGATGTGTGTCacacccc
tttctccctatGCTGGCGTGTTATGGTATAGATGACACGGTGAAAGTGTT
GGCGGTCGGCGGCCGCTATCGCCAGCCCGAGGGTGCGAACGGGGATGACT
TCGTAGAAGAGGACAGTGATAATGGATGGCAGGACACTCACAGAATGCCA
TATGAAGCACAACGACGCGAaatgggaagagggagtgacGGCACTGCACC
GGAATACCGTAATTTAAGGGGCAGCAGACGCCCCCGGTCACGGTCAAACC
TGCATCGGACAGAACTGCCTCCAAATCAATATTTTGCGCAACTTTTGGAA
AAAAACTTAAATAAAGTCATAGCCATAGACGCTCCCAAGCCGTTGCGAGT
CGTGTATGACTTTAATCGGTTTTGTCATCACGTGCGACGCATCCGCAAGT
TTCTGATCAATCCCAATGAATGCCTGCCAGATTACCCAAGTGATTTGTGG
GACCGACAACTTTCTCTTGAAGAATTGAAAGGTCTGTTGATGGccttgaa
ggagaaggggaaccTGTCTTTCAAGAAGATGGAATATCGCATAGCTGCGG
CAAGCTATGGTAAAATTTTGAATTGGCTTTTCTCTTCCGCTGAATTAGAA
CCGCACATCCGAATGACACGTGAAGAAAATTTTAAACTGTGGAATGGCGA
CGACTATGAAGATGCGCCCGTAGTTTTTTTTGGAACTCTACTGCCGCCAC
ACGCCCGACAACGAGAAAGAATAAATGCCATCTTGGCAGGAAATTTCACG
GAGGATGGAGCTAACATCGCTGTAGAAGCGGTCGAAAGAAAGAGTGACGC
GAACGCTgcatccatttcctcccaagctgtgaaggaggagctaATGGATT
TGCTGGTGTCGTCTTTGCTGAACTTGGCGATGGCAGTCTTAAAGCAAAAC
GAATACAAGCGTGCCATAAAATTATGTACCCTGGCAATCCGACACCGGCC
TTTCGATGCTAAAGCGTATTACAGGAGAGGTAGCGCCGCATTAGAGCTAG
GTGACGACTATGAGGCTGGCACGAAGGACCTTATTAAAGCATGTAAACTG
GCACCTAATGACGTACTAATTCGGCGCAAGTTAGAGACGTGCCGGCAAAT
TGTGAAGGCGCGAAAAGCTCGAGAATCCCGGGCATatgcctctttcttct
ctccttga back to top
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