EWM24660.1, cds6007 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|585106182|gb|EWM24660.1| (Tetratricopeptide-like helical protein [Nannochloropsis gaditana]) HSP 1 Score: 1636.7 bits (4237), Expect = 0.000e+0 Identity = 785/785 (100.00%), Postives = 785/785 (100.00%), Query Frame = 0 Query: 1 MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP 785 MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP Sbjct: 1 MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP 785
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|397628298|gb|EJK68838.1| (hypothetical protein THAOC_09949 [Thalassiosira oceanica]) HSP 1 Score: 145.591 bits (366), Expect = 5.307e-32 Identity = 110/348 (31.61%), Postives = 166/348 (47.70%), Query Frame = 0 Query: 118 VVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTS-----------CAPHVMHGFSFWEGGSDSGGGR-----------GQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACY----------EERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDD 433 ++SGH N+F PN P ++ TCAADG LR ++ H +++ + G S + VM SF SDS G G + L GL + +DLR SA VP + + +G + ++ GG +T+ +DLR L T S+ VQ YRP+ L + ++SG+ SK + E++ SY+ D IY F C+ E+ +D+ E + GGH+N TFLK+ + GP +E+I G DSGH +++++R+G + + I++D S ANG + HP LP YGID T K+ R QP N DD Sbjct: 553 TISSGHRGNVFHCTPVPNSPGKVATCAADGQLRLADVE-RHSMLSSNGRGRSDSIASALSHPEASTIVMDLDSF---ESDSSGFSRTMCFSHCFFDGNVGLVCSERGL-LHFDLR--LSARNQRRASLVPELSRTCKACYPWQTGGESAYVFAGGTTSTVGLYDLRMLGDTRSQVVQTYRPRAL-------RSKQAAVSGIDLSKDKREIIVSYEADHIYRFP--CFPEAPAFGPSLEDINECSKDKPLSELAAYGGHLNRLTFLKSAKFAGPRDEFICTGSDSGHCWIYEKRSGAVASFIKSDNSTANGILPHPELPFFLTYGIDSTAKLW----RATQPVDLNVDD 880
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1208531282|gb|OWM84157.1| (hypothetical protein CDL15_Pgr028149 [Punica granatum]) HSP 1 Score: 140.584 bits (353), Expect = 9.264e-32 Identity = 140/435 (32.18%), Postives = 186/435 (42.76%), Query Frame = 0 Query: 35 GQLRRRDATDSAAYSPAFTPFDVRRLG--FVGRASHK---------RSWLNSVLK--------------------HDGCVNTACWSEDGRILFTAGDDRDIKIW--LATYD-FSAQGVVASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------CSA--GRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGS----KPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACY---EERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416 G LRRR +TD AFT R G GR +H+ RS L+ L H+ CVNT ++ G IL + DD I W LA FS SGH N+F ++ P D +VT +ADG +R Q+ + GHV HV +H D G I + DG V +DLR CS+ A +R V + + N + LGG +D+RR R+ S KPV ++ P P +D D N+ ++GLAFSK E+L SY + IY F + E E GH N +T +K V++FGP +EY+A G DSGH F+W +R G LV + D V N HP +P LA GIDDTVKV Sbjct: 2 GNLRRRGSTD------AFTEIYRRETGPSHPGRFAHRLSAAEVLYCRSSLSVFLMYLSYGQVLVERLALHARLNGHEECVNTIEFNSAGDILVSGSDDGKIVFWNWLAKMKKFSYN----SGHLENVFQAKIMPFSNDRAIVTSSADGEVRLGQV-----LEGGHVDTRCLGNHVGAVHKL-------DVEPGSPYIFYSCGEDGFVRRFDLRSNSATTLFSCSSLYENARHREDVVMLNAIVIDTRN------PYYFALGGSDEFARLYDIRRCKRSASTNVDKPVDLFCP---PHLVDID---NIQITGLAFSK-SSELLVSYNDELIYLFQKNMGLGPSPPSVPPEIEQQEEPQVYRGHRNSRT-IKGVSFFGPHDEYVASGSDSGHVFIWKKRGGKLVRLMVGDRHVVNQVEPHPHMPFLATCGIDDTVKV 400
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1175849376|ref|XP_020578249.1| (DDB1- and CUL4-associated factor 8 [Phalaenopsis equestris]) HSP 1 Score: 138.658 bits (348), Expect = 2.695e-31 Identity = 114/380 (30.00%), Postives = 170/380 (44.74%), Query Frame = 0 Query: 79 HDGCVNTACWSEDGRILFTAGDDRDIKIW-------LATYDFSAQGVVASGHSANIFGVQVPPNRPDELV-TCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------CSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSK----PVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATAC---YEERRIAQEDRASMEAWSLG-GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFV 435 H GCVNT +S G I+ + DD+DI W + TYD SGH+ N+F QV P D +V T AADG +R ++ ++ VGT +H + G I + DGLV +DLR Q CS+ A + + + ++ P + GG A +D+R P SK PV + PRHL NV ++GLA+S + E+L SY + IY F + I E +++ + GH N T +K V++FGP +EY+ G D GH ++W++++G LV + D + N HPF P+LA G D VK+ R P N ++ + Sbjct: 45 HKGCVNTVHFSPSGDIVVSGSDDKDICFWNWSTKRKILTYD--------SGHNENVFQAQVMPYTDDRIVVTSAADGQVRLGEV-MEDDQVSTRRVGTHQG--RVHKLAIEPGSP-------HIFYSCGEDGLVQQFDLRNQTPIKLLTCSSFSAN-KNSLGLNSISIDPRNPN-------YFSTGGLDAYARVYDIRNYPWDVSKGLDQPVNTF----CPRHLIS--STNVHITGLAYSN-KSELLVSYSDELIYLFQKEMGIGTQPNTIQAEALQNLDQPQVYIGHRNSHT-VKGVSFFGPCDEYVTSGSDCGHVYIWNKKSGKLVRMMVGDKQIVNSVEPHPFFPLLATSGFDKNVKLWTPMSRSTAPLPKNAEEIM 390
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1174567021|gb|OQU92205.1| (hypothetical protein SORBI_3001G310100 [Sorghum bicolor]) HSP 1 Score: 135.961 bits (341), Expect = 2.545e-30 Identity = 111/376 (29.52%), Postives = 164/376 (43.62%), Query Frame = 0 Query: 78 KHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGV---VASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGV---SAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFAT------------------ACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQP 426 +H GCVNT +SE G IL + DD+ + +W D+ V SGH N+F + P D+ +VTCAADG +R +I G V T H H + G I+ + DGLV +DLR +A + R +K+V + +H A + + + +GG A +D+R+ GS P HL +D ++V ++GLAFS + E+L SY + IY F C + D + GH NC+T +K V++ GP +EY+A G D G F+W +R G + A+ D + N HP +A GID+ VKV R P Sbjct: 21 RHTGCVNTVSFSEVGDILVSGSDDQRVMLW----DWDTGTVKLEFHSGHGGNVFQARFMPCSDDQTIVTCAADGEVRLAKIQ-----DGGDVSTTLLGEHGGRAHNLAIEPGSP-------YILYSCGEDGLVQQFDLRTN-TASKLFLCRSSFIKSVSSTRIHLNAIAIDPRNPNLFAVGGSNAYARVYDIRKCKWDGSSDFGHTSNCYCPPHLVDD--KSVGITGLAFSHL-SELLVSYNEENIYLFPKNGGLGSDPKKSVKIGANEGCKSTTLASGHDVSQPAPQVYVGHRNCET-VKRVSFIGPNDEYVASGSDCGRMFIWRKRDGKFLRAMEGDECIVNCIEPHPHAMTIASCGIDNDVKVWTPSAIERAP 375
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1205928986|ref|XP_021307501.1| (DDB1- and CUL4-associated factor 8-like [Sorghum bicolor] >gi|992280912|gb|KXG38988.1| hypothetical protein SORBI_3001G310100 [Sorghum bicolor]) HSP 1 Score: 135.961 bits (341), Expect = 3.489e-30 Identity = 111/376 (29.52%), Postives = 164/376 (43.62%), Query Frame = 0 Query: 78 KHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGV---VASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGV---SAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFAT------------------ACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQP 426 +H GCVNT +SE G IL + DD+ + +W D+ V SGH N+F + P D+ +VTCAADG +R +I G V T H H + G I+ + DGLV +DLR +A + R +K+V + +H A + + + +GG A +D+R+ GS P HL +D ++V ++GLAFS + E+L SY + IY F C + D + GH NC+T +K V++ GP +EY+A G D G F+W +R G + A+ D + N HP +A GID+ VKV R P Sbjct: 58 RHTGCVNTVSFSEVGDILVSGSDDQRVMLW----DWDTGTVKLEFHSGHGGNVFQARFMPCSDDQTIVTCAADGEVRLAKIQ-----DGGDVSTTLLGEHGGRAHNLAIEPGSP-------YILYSCGEDGLVQQFDLRTN-TASKLFLCRSSFIKSVSSTRIHLNAIAIDPRNPNLFAVGGSNAYARVYDIRKCKWDGSSDFGHTSNCYCPPHLVDD--KSVGITGLAFSHL-SELLVSYNEENIYLFPKNGGLGSDPKKSVKIGANEGCKSTTLASGHDVSQPAPQVYVGHRNCET-VKRVSFIGPNDEYVASGSDCGRMFIWRKRDGKFLRAMEGDECIVNCIEPHPHAMTIASCGIDNDVKVWTPSAIERAP 412
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|168017708|ref|XP_001761389.1| (predicted protein [Physcomitrella patens] >gi|162687395|gb|EDQ73778.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 134.806 bits (338), Expect = 7.719e-30 Identity = 115/373 (30.83%), Postives = 176/373 (47.18%), Query Frame = 0 Query: 79 HDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDEL-VTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------C-----SAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGS----KPVQIYRPQGL--PRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGF------ATACYEERRIAQEDRASMEAWSLG--------GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416 H GCVNT ++ G +L + DD+DI +W + SGH N+F +V P D + V+CAADG +R I N G VV A H H + G S +I + DG+V +DLRE+ C ++G+ R V + +VT P++ ++ F +GG +D+RRL GS +PV+ Y P+ L P H DE ++ +A+S E+L SY + IY F ++ ++ +++ EA + G GH N QT +K V +FGP EY+ G D G F+W ++ G LV ++ D +V N HP+ +LA GI+DT+K+ Sbjct: 51 HSGCVNTVSFNPTGELLVSGSDDQDIIVWNWANKTQVLSYI-SGHENNVFQARVMPYCDDRIIVSCAADGQVRSATILEN-----GMVVTKKLAKHRGRAHKMAIEPGSS-------RIFYSCGEDGVVQHFDLREEKATKLLTCHQFGKNSGKPSRSRVVRLNVIVTHPIN-----LNYFT--VGGSDQYARVYDIRRLTANGSEMEDQPVETYAPKHLLGPGH-DE------HITCVAYSHQE-ELLVSYNDELIYLFDKSMSLGSSPHKNVEENEKEGDGGEASNQGNTQPQVYEGHRNHQT-VKGVNFFGPNTEYVVSGSDCGRIFIWKKKGGKLVALMKGDDTVVNCLEPHPYATILATSGIEDTIKI 394
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|156380939|ref|XP_001632024.1| (predicted protein [Nematostella vectensis] >gi|156219074|gb|EDO39961.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 133.65 bits (335), Expect = 1.168e-29 Identity = 124/412 (30.10%), Postives = 187/412 (45.39%), Query Frame = 0 Query: 22 NRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLK-HDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVV---ASGHSANIFGVQ-VPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTS-CAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAG----RAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLP---RTGSKPVQIYRPQGLPRHLD-EDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVS-HPFLPMLACYGIDDTVKV 416 N +A+ KR+ + + A SP + F + G G +R L+S LK HDGCVNT +S G +L + DD DI IW D++ + V SGH++N+F + +P + LV+CA DG +R + G GT + H H S G T DG+V DLRE + RA ++VP+ + P S ++ F +GG +D R+LP + ++PV+ Y P HLD DF N++ L +S E+L SY + IY F + ++ + GH N T +K V ++GP E++ G D GH FLWD++T +VN + D + C+ HP P+LA G+D VK+ Sbjct: 35 NMAATAGSKRKDWPVIPSLFARQQGLLSPGY--FTKKASGSTGLV--QRLKLHSNLKYHDGCVNTLHYSPTGELLASGSDDLDIVIW----DWAKKKKVLHYESGHASNVFQAKFMPFSSESTLVSCARDGQVRVGFLSS-----TGTSKGTKKLSQHRGAAHKLSIEPGSP-------WTFFTCGEDGVVFQVDLREDKAQKLFCCRASEHKKVPLYTIYVNP-----SNINEFA--VGGRDQFARIYDRRKLPEDSKVNAEPVKQY----CPHHLDGNDFFANITC--LVYSHDGSELLVSYNDEDIYLFDSYSSSGAEFVKQYK---------GHRNNAT-VKGVNFYGPESEFVVSGSDCGHVFLWDKQTEEIVNFLDADATGVVNCLEPHPSAPVLATSGLDHDVKI 403
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|659094165|ref|XP_008447917.1| (PREDICTED: DDB1- and CUL4-associated factor 8 [Cucumis melo]) HSP 1 Score: 134.035 bits (336), Expect = 1.392e-29 Identity = 111/369 (30.08%), Postives = 159/369 (43.09%), Query Frame = 0 Query: 78 KHDGCVNTACWSEDGRILFTAGDDRDIKIW---LATYDFSAQGVVASGHSANIFGVQVPPNRPD-ELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLRE---------QCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFA--TACYEERRIAQEDRASMEAWSLG-------------GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416 +H GCVNT ++ G IL + DDR + +W S Q SGH+ N+F ++ P D +VTCAADG +R QI + +GHV + H+ H + G + T DGLV +DLR Q RA Y + + A+V P + + + G +D+R+ GS P HL D E V ++GLAFS++ E+L SY + IY F A S +A +G GH NC+T +K V +FGP EY+ G D G F+W ++ G L+ + D V N HP + MLA GI+ VK+ Sbjct: 52 RHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGRVKLSFQ----SGHNNNVFQAKIMPYTDDRSIVTCAADGQVRHAQI-----LNSGHVETSLLGSHLGRAHKLAIEPGSP-------YMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNRAGYMSSIQLNAIVIDPRNPN-------LFVVAGSDEYARLYDIRKSGEDGSTDFGQLADCYCPPHLIGD--EQVGITGLAFSEL-SELLVSYNDESIYLFNRDMGLGPNPNPAPPLSLSSDASEMGAEKVDNGIPQVYKGHRNCET-VKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGELIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKI 393
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1028984384|ref|XP_016737499.1| (PREDICTED: DDB1- and CUL4-associated factor 8-like isoform X3 [Gossypium hirsutum]) HSP 1 Score: 133.65 bits (335), Expect = 2.191e-29 Identity = 128/441 (29.02%), Postives = 181/441 (41.04%), Query Frame = 0 Query: 73 LNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPD-ELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ--------CSAGRA-MYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFA---------------TACYEERRIAQEDRASMEAWSL-----------GGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGW-------QDTHRMPYEAQRREMGRGSDGTAPE 468 L + KH GCVNT ++ DG IL + DD+ I +W A+ SGH +N+F ++ P D L+TCAADG +R QI + G V A H H + G I T DGLV DLR CS + Y + + A+ P + + + G +D+R+ GS P HL D Q V ++GLAFS + E+L SY + IY F +AC E + D ++M A ++ GH NC+T +K VT+FGP EY+ G D G F+W ++ G LV + D V N SHP +LA GI+ +K+ + N + F + GW QD + QRR GT+PE Sbjct: 47 LRKLDKHRGCVNTVSFNADGNILVSGSDDKRIILWDWETGV-AKLTFQSGHLSNVFQAKIMPYTDDRSLITCAADGQVRHAQI------LEGGVETRLVAKHQGRAHKLAVEPGSP-------HIFYTCGEDGLVQHIDLRTAAATELFTCCSIDESRAYMPVIALNAIAIDPRNPN-------LFAVAGSDEYTRLYDVRKYKWDGSTDFGQPTDYFCPSHLIGDDQ--VGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPVPSSPLSACNEASEMGL-DHSAMSASAMEADEKAIPQVYKGHRNCET-VKGVTFFGPKSEYVVSGSDCGRIFIWKKKDGQLVRVMEADKHVVNCIESHPHTMVLASSGIERDIKIWTPKAINKATLPTNIEQF--KPKPRGWMYRITTPQDLMLQLFSLQRR-------GTSPE 452 The following BLAST results are available for this feature:
BLAST of EWM24660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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