EWM24660.1, cds6007 (CDS) Nannochloropsis gaditana

Overview
NameEWM24660.1
Unique Namecds6007
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:389865..392222 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24660.1
ProductTetratricopeptide-like helical protein
Orig transcript idgnl|cribi|Naga_100055g32.7344.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:389865..392222 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR011990TPR-like_helical_dom
IPR001680WD40_repeat
IPR019734TPR_repeat
Homology
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|585106182|gb|EWM24660.1| (Tetratricopeptide-like helical protein [Nannochloropsis gaditana])

HSP 1 Score: 1636.7 bits (4237), Expect = 0.000e+0
Identity = 785/785 (100.00%), Postives = 785/785 (100.00%), Query Frame = 0
Query:    1 MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP 785
            MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP
Sbjct:    1 MSIKPTWEAFADCPSTLFSPQNRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGWQDTHRMPYEAQRREMGRGSDGTAPEYRNLRGSRRPRSRSNLHRTELPPNQYFAQLLEKNLNKVIAIDAPKPLRVVYDFNRFCHHVRRIRKFLINPNECLPDYPSDLWDRQLSLEELKGLLMALKEKGNLSFKKMEYRIAAASYGKILNWLFSSAELEPHIRMTREENFKLWNGDDYEDAPVVFFGTLLPPHARQRERINAILAGNFTEDGANIAVEAVERKSDANAASISSQAVKEELMDLLVSSLLNLAMAVLKQNEYKRAIKLCTLAIRHRPFDAKAYYRRGSAALELGDDYEAGTKDLIKACKLAPNDVLIRRKLETCRQIVKARKARESRAYASFFSP 785          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|397628298|gb|EJK68838.1| (hypothetical protein THAOC_09949 [Thalassiosira oceanica])

HSP 1 Score: 145.591 bits (366), Expect = 5.307e-32
Identity = 110/348 (31.61%), Postives = 166/348 (47.70%), Query Frame = 0
Query:  118 VVASGHSANIFGVQVPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTS-----------CAPHVMHGFSFWEGGSDSGGGR-----------GQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACY----------EERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDD 433
             ++SGH  N+F     PN P ++ TCAADG LR   ++  H +++ +  G S            +  VM   SF    SDS G             G + L     GL + +DLR   SA        VP  +      +   +G  +  ++ GG  +T+  +DLR L  T S+ VQ YRP+ L         +  ++SG+  SK + E++ SY+ D IY F   C+          E+     +D+   E  + GGH+N  TFLK+  + GP +E+I  G DSGH +++++R+G + + I++D S ANG + HP LP    YGID T K+     R  QP   N DD
Sbjct:  553 TISSGHRGNVFHCTPVPNSPGKVATCAADGQLRLADVE-RHSMLSSNGRGRSDSIASALSHPEASTIVMDLDSF---ESDSSGFSRTMCFSHCFFDGNVGLVCSERGL-LHFDLR--LSARNQRRASLVPELSRTCKACYPWQTGGESAYVFAGGTTSTVGLYDLRMLGDTRSQVVQTYRPRAL-------RSKQAAVSGIDLSKDKREIIVSYEADHIYRFP--CFPEAPAFGPSLEDINECSKDKPLSELAAYGGHLNRLTFLKSAKFAGPRDEFICTGSDSGHCWIYEKRSGAVASFIKSDNSTANGILPHPELPFFLTYGIDSTAKLW----RATQPVDLNVDD 880          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1208531282|gb|OWM84157.1| (hypothetical protein CDL15_Pgr028149 [Punica granatum])

HSP 1 Score: 140.584 bits (353), Expect = 9.264e-32
Identity = 140/435 (32.18%), Postives = 186/435 (42.76%), Query Frame = 0
Query:   35 GQLRRRDATDSAAYSPAFTPFDVRRLG--FVGRASHK---------RSWLNSVLK--------------------HDGCVNTACWSEDGRILFTAGDDRDIKIW--LATYD-FSAQGVVASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------CSA--GRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGS----KPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACY---EERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416
            G LRRR +TD      AFT    R  G    GR +H+         RS L+  L                     H+ CVNT  ++  G IL +  DD  I  W  LA    FS      SGH  N+F  ++ P   D  +VT +ADG +R  Q+     +  GHV       HV  +H         D   G   I  +   DG V  +DLR         CS+    A +R  V +   +     N       +   LGG       +D+RR  R+ S    KPV ++ P   P  +D D   N+ ++GLAFSK   E+L SY  + IY F            +  E     E     GH N +T +K V++FGP +EY+A G DSGH F+W +R G LV  +  D  V N    HP +P LA  GIDDTVKV
Sbjct:    2 GNLRRRGSTD------AFTEIYRRETGPSHPGRFAHRLSAAEVLYCRSSLSVFLMYLSYGQVLVERLALHARLNGHEECVNTIEFNSAGDILVSGSDDGKIVFWNWLAKMKKFSYN----SGHLENVFQAKIMPFSNDRAIVTSSADGEVRLGQV-----LEGGHVDTRCLGNHVGAVHKL-------DVEPGSPYIFYSCGEDGFVRRFDLRSNSATTLFSCSSLYENARHREDVVMLNAIVIDTRN------PYYFALGGSDEFARLYDIRRCKRSASTNVDKPVDLFCP---PHLVDID---NIQITGLAFSK-SSELLVSYNDELIYLFQKNMGLGPSPPSVPPEIEQQEEPQVYRGHRNSRT-IKGVSFFGPHDEYVASGSDSGHVFIWKKRGGKLVRLMVGDRHVVNQVEPHPHMPFLATCGIDDTVKV 400          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1175849376|ref|XP_020578249.1| (DDB1- and CUL4-associated factor 8 [Phalaenopsis equestris])

HSP 1 Score: 138.658 bits (348), Expect = 2.695e-31
Identity = 114/380 (30.00%), Postives = 170/380 (44.74%), Query Frame = 0
Query:   79 HDGCVNTACWSEDGRILFTAGDDRDIKIW-------LATYDFSAQGVVASGHSANIFGVQVPPNRPDELV-TCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHVMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------CSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSK----PVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATAC---YEERRIAQEDRASMEAWSLG-GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFV 435
            H GCVNT  +S  G I+ +  DD+DI  W       + TYD        SGH+ N+F  QV P   D +V T AADG +R  ++      ++   VGT      +H  +   G          I  +   DGLV  +DLR Q       CS+  A  +  + + ++   P +             GG  A    +D+R  P   SK    PV  +     PRHL      NV ++GLA+S  + E+L SY  + IY F        +   I  E   +++   +  GH N  T +K V++FGP +EY+  G D GH ++W++++G LV  +  D  + N    HPF P+LA  G D  VK+     R   P   N ++ +
Sbjct:   45 HKGCVNTVHFSPSGDIVVSGSDDKDICFWNWSTKRKILTYD--------SGHNENVFQAQVMPYTDDRIVVTSAADGQVRLGEV-MEDDQVSTRRVGTHQG--RVHKLAIEPGSP-------HIFYSCGEDGLVQQFDLRNQTPIKLLTCSSFSAN-KNSLGLNSISIDPRNPN-------YFSTGGLDAYARVYDIRNYPWDVSKGLDQPVNTF----CPRHLIS--STNVHITGLAYSN-KSELLVSYSDELIYLFQKEMGIGTQPNTIQAEALQNLDQPQVYIGHRNSHT-VKGVSFFGPCDEYVTSGSDCGHVYIWNKKSGKLVRMMVGDKQIVNSVEPHPFFPLLATSGFDKNVKLWTPMSRSTAPLPKNAEEIM 390          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1174567021|gb|OQU92205.1| (hypothetical protein SORBI_3001G310100 [Sorghum bicolor])

HSP 1 Score: 135.961 bits (341), Expect = 2.545e-30
Identity = 111/376 (29.52%), Postives = 164/376 (43.62%), Query Frame = 0
Query:   78 KHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGV---VASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGV---SAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFAT------------------ACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQP 426
            +H GCVNT  +SE G IL +  DD+ + +W    D+    V     SGH  N+F  +  P   D+ +VTCAADG +R  +I        G V  T    H    H  +   G          I+ +   DGLV  +DLR   +A +    R   +K+V +  +H  A  +   +  +  +GG  A    +D+R+    GS           P HL +D  ++V ++GLAFS +  E+L SY  + IY F                     C      +  D +        GH NC+T +K V++ GP +EY+A G D G  F+W +R G  + A+  D  + N    HP    +A  GID+ VKV       R P
Sbjct:   21 RHTGCVNTVSFSEVGDILVSGSDDQRVMLW----DWDTGTVKLEFHSGHGGNVFQARFMPCSDDQTIVTCAADGEVRLAKIQ-----DGGDVSTTLLGEHGGRAHNLAIEPGSP-------YILYSCGEDGLVQQFDLRTN-TASKLFLCRSSFIKSVSSTRIHLNAIAIDPRNPNLFAVGGSNAYARVYDIRKCKWDGSSDFGHTSNCYCPPHLVDD--KSVGITGLAFSHL-SELLVSYNEENIYLFPKNGGLGSDPKKSVKIGANEGCKSTTLASGHDVSQPAPQVYVGHRNCET-VKRVSFIGPNDEYVASGSDCGRMFIWRKRDGKFLRAMEGDECIVNCIEPHPHAMTIASCGIDNDVKVWTPSAIERAP 375          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1205928986|ref|XP_021307501.1| (DDB1- and CUL4-associated factor 8-like [Sorghum bicolor] >gi|992280912|gb|KXG38988.1| hypothetical protein SORBI_3001G310100 [Sorghum bicolor])

HSP 1 Score: 135.961 bits (341), Expect = 3.489e-30
Identity = 111/376 (29.52%), Postives = 164/376 (43.62%), Query Frame = 0
Query:   78 KHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGV---VASGHSANIFGVQVPPNRPDE-LVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAGRAMYRRQVPVKAVVTPPVHNTASGV---SAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFAT------------------ACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQP 426
            +H GCVNT  +SE G IL +  DD+ + +W    D+    V     SGH  N+F  +  P   D+ +VTCAADG +R  +I        G V  T    H    H  +   G          I+ +   DGLV  +DLR   +A +    R   +K+V +  +H  A  +   +  +  +GG  A    +D+R+    GS           P HL +D  ++V ++GLAFS +  E+L SY  + IY F                     C      +  D +        GH NC+T +K V++ GP +EY+A G D G  F+W +R G  + A+  D  + N    HP    +A  GID+ VKV       R P
Sbjct:   58 RHTGCVNTVSFSEVGDILVSGSDDQRVMLW----DWDTGTVKLEFHSGHGGNVFQARFMPCSDDQTIVTCAADGEVRLAKIQ-----DGGDVSTTLLGEHGGRAHNLAIEPGSP-------YILYSCGEDGLVQQFDLRTN-TASKLFLCRSSFIKSVSSTRIHLNAIAIDPRNPNLFAVGGSNAYARVYDIRKCKWDGSSDFGHTSNCYCPPHLVDD--KSVGITGLAFSHL-SELLVSYNEENIYLFPKNGGLGSDPKKSVKIGANEGCKSTTLASGHDVSQPAPQVYVGHRNCET-VKRVSFIGPNDEYVASGSDCGRMFIWRKRDGKFLRAMEGDECIVNCIEPHPHAMTIASCGIDNDVKVWTPSAIERAP 412          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|168017708|ref|XP_001761389.1| (predicted protein [Physcomitrella patens] >gi|162687395|gb|EDQ73778.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 134.806 bits (338), Expect = 7.719e-30
Identity = 115/373 (30.83%), Postives = 176/373 (47.18%), Query Frame = 0
Query:   79 HDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPDEL-VTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ-------C-----SAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGS----KPVQIYRPQGL--PRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGF------ATACYEERRIAQEDRASMEAWSLG--------GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416
            H GCVNT  ++  G +L +  DD+DI +W           + SGH  N+F  +V P   D + V+CAADG +R   I  N     G VV    A H    H  +   G S       +I  +   DG+V  +DLRE+       C     ++G+    R V +  +VT P++     ++ F   +GG       +D+RRL   GS    +PV+ Y P+ L  P H DE       ++ +A+S    E+L SY  + IY F       ++ ++     +++    EA + G        GH N QT +K V +FGP  EY+  G D G  F+W ++ G LV  ++ D +V N    HP+  +LA  GI+DT+K+
Sbjct:   51 HSGCVNTVSFNPTGELLVSGSDDQDIIVWNWANKTQVLSYI-SGHENNVFQARVMPYCDDRIIVSCAADGQVRSATILEN-----GMVVTKKLAKHRGRAHKMAIEPGSS-------RIFYSCGEDGVVQHFDLREEKATKLLTCHQFGKNSGKPSRSRVVRLNVIVTHPIN-----LNYFT--VGGSDQYARVYDIRRLTANGSEMEDQPVETYAPKHLLGPGH-DE------HITCVAYSHQE-ELLVSYNDELIYLFDKSMSLGSSPHKNVEENEKEGDGGEASNQGNTQPQVYEGHRNHQT-VKGVNFFGPNTEYVVSGSDCGRIFIWKKKGGKLVALMKGDDTVVNCLEPHPYATILATSGIEDTIKI 394          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|156380939|ref|XP_001632024.1| (predicted protein [Nematostella vectensis] >gi|156219074|gb|EDO39961.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 133.65 bits (335), Expect = 1.168e-29
Identity = 124/412 (30.10%), Postives = 187/412 (45.39%), Query Frame = 0
Query:   22 NRSASILRKREIYGQLRRRDATDSAAYSPAFTPFDVRRLGFVGRASHKRSWLNSVLK-HDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVV---ASGHSANIFGVQ-VPPNRPDELVTCAADGTLRRHQIDCNHPVIAGHVVGTS-CAPH--VMHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQCSAG----RAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLP---RTGSKPVQIYRPQGLPRHLD-EDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFATACYEERRIAQEDRASMEAWSLGGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVS-HPFLPMLACYGIDDTVKV 416
            N +A+   KR+ +  +    A      SP +  F  +  G  G    +R  L+S LK HDGCVNT  +S  G +L +  DD DI IW    D++ +  V    SGH++N+F  + +P +    LV+CA DG +R   +        G   GT   + H    H  S   G             T   DG+V   DLRE  +      RA   ++VP+  +   P     S ++ F   +GG       +D R+LP   +  ++PV+ Y     P HLD  DF  N++   L +S    E+L SY  + IY F +         ++ +         GH N  T +K V ++GP  E++  G D GH FLWD++T  +VN +  D +    C+  HP  P+LA  G+D  VK+
Sbjct:   35 NMAATAGSKRKDWPVIPSLFARQQGLLSPGY--FTKKASGSTGLV--QRLKLHSNLKYHDGCVNTLHYSPTGELLASGSDDLDIVIW----DWAKKKKVLHYESGHASNVFQAKFMPFSSESTLVSCARDGQVRVGFLSS-----TGTSKGTKKLSQHRGAAHKLSIEPGSP-------WTFFTCGEDGVVFQVDLREDKAQKLFCCRASEHKKVPLYTIYVNP-----SNINEFA--VGGRDQFARIYDRRKLPEDSKVNAEPVKQY----CPHHLDGNDFFANITC--LVYSHDGSELLVSYNDEDIYLFDSYSSSGAEFVKQYK---------GHRNNAT-VKGVNFYGPESEFVVSGSDCGHVFLWDKQTEEIVNFLDADATGVVNCLEPHPSAPVLATSGLDHDVKI 403          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|659094165|ref|XP_008447917.1| (PREDICTED: DDB1- and CUL4-associated factor 8 [Cucumis melo])

HSP 1 Score: 134.035 bits (336), Expect = 1.392e-29
Identity = 111/369 (30.08%), Postives = 159/369 (43.09%), Query Frame = 0
Query:   78 KHDGCVNTACWSEDGRILFTAGDDRDIKIW---LATYDFSAQGVVASGHSANIFGVQVPPNRPD-ELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLRE---------QCSAGRAMYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFA--TACYEERRIAQEDRASMEAWSLG-------------GHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKV 416
            +H GCVNT  ++  G IL +  DDR + +W         S Q    SGH+ N+F  ++ P   D  +VTCAADG +R  QI     + +GHV  +    H+   H  +   G          +  T   DGLV  +DLR          Q    RA Y   + + A+V  P +         +  + G       +D+R+    GS           P HL  D  E V ++GLAFS++  E+L SY  + IY F            A     S +A  +G             GH NC+T +K V +FGP  EY+  G D G  F+W ++ G L+  +  D  V N    HP + MLA  GI+  VK+
Sbjct:   52 RHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGRVKLSFQ----SGHNNNVFQAKIMPYTDDRSIVTCAADGQVRHAQI-----LNSGHVETSLLGSHLGRAHKLAIEPGSP-------YMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNRAGYMSSIQLNAIVIDPRNPN-------LFVVAGSDEYARLYDIRKSGEDGSTDFGQLADCYCPPHLIGD--EQVGITGLAFSEL-SELLVSYNDESIYLFNRDMGLGPNPNPAPPLSLSSDASEMGAEKVDNGIPQVYKGHRNCET-VKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGELIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKI 393          
BLAST of EWM24660.1 vs. NCBI_GenBank
Match: gi|1028984384|ref|XP_016737499.1| (PREDICTED: DDB1- and CUL4-associated factor 8-like isoform X3 [Gossypium hirsutum])

HSP 1 Score: 133.65 bits (335), Expect = 2.191e-29
Identity = 128/441 (29.02%), Postives = 181/441 (41.04%), Query Frame = 0
Query:   73 LNSVLKHDGCVNTACWSEDGRILFTAGDDRDIKIWLATYDFSAQGVVASGHSANIFGVQVPPNRPD-ELVTCAADGTLRRHQIDCNHPVIAGHVVGTSCAPHV--MHGFSFWEGGSDSGGGRGQIILTAQGDGLVMMYDLREQ--------CSAGRA-MYRRQVPVKAVVTPPVHNTASGVSAFMMYLGGHGATLEAHDLRRLPRTGSKPVQIYRPQGLPRHLDEDFQENVSLSGLAFSKMRGEVLASYQGDQIYGFA---------------TACYEERRIAQEDRASMEAWSL-----------GGHVNCQTFLKNVTYFGPAEEYIACGDDSGHSFLWDRRTGMLVNAIRTDLSVANGCVSHPFLPMLACYGIDDTVKVLAVGGRYRQPEGANGDDFVEEDSDNGW-------QDTHRMPYEAQRREMGRGSDGTAPE 468
            L  + KH GCVNT  ++ DG IL +  DD+ I +W       A+    SGH +N+F  ++ P   D  L+TCAADG +R  QI      + G V     A H    H  +   G          I  T   DGLV   DLR          CS   +  Y   + + A+   P +         +  + G       +D+R+    GS           P HL  D Q  V ++GLAFS  + E+L SY  + IY F                +AC E   +   D ++M A ++            GH NC+T +K VT+FGP  EY+  G D G  F+W ++ G LV  +  D  V N   SHP   +LA  GI+  +K+       +     N + F  +    GW       QD     +  QRR       GT+PE
Sbjct:   47 LRKLDKHRGCVNTVSFNADGNILVSGSDDKRIILWDWETGV-AKLTFQSGHLSNVFQAKIMPYTDDRSLITCAADGQVRHAQI------LEGGVETRLVAKHQGRAHKLAVEPGSP-------HIFYTCGEDGLVQHIDLRTAAATELFTCCSIDESRAYMPVIALNAIAIDPRNPN-------LFAVAGSDEYTRLYDVRKYKWDGSTDFGQPTDYFCPSHLIGDDQ--VGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPVPSSPLSACNEASEMGL-DHSAMSASAMEADEKAIPQVYKGHRNCET-VKGVTFFGPKSEYVVSGSDCGRIFIWKKKDGQLVRVMEADKHVVNCIESHPHTMVLASSGIERDIKIWTPKAINKATLPTNIEQF--KPKPRGWMYRITTPQDLMLQLFSLQRR-------GTSPE 452          
The following BLAST results are available for this feature:
BLAST of EWM24660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106182|gb|EWM24660.1|0.000e+0100.00Tetratricopeptide-like helical protein [Nannochlor... [more]
gi|397628298|gb|EJK68838.1|5.307e-3231.61hypothetical protein THAOC_09949 [Thalassiosira oc... [more]
gi|1208531282|gb|OWM84157.1|9.264e-3232.18hypothetical protein CDL15_Pgr028149 [Punica grana... [more]
gi|1175849376|ref|XP_020578249.1|2.695e-3130.00DDB1- and CUL4-associated factor 8 [Phalaenopsis e... [more]
gi|1174567021|gb|OQU92205.1|2.545e-3029.52hypothetical protein SORBI_3001G310100 [Sorghum bi... [more]
gi|1205928986|ref|XP_021307501.1|3.489e-3029.52DDB1- and CUL4-associated factor 8-like [Sorghum b... [more]
gi|168017708|ref|XP_001761389.1|7.719e-3030.83predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|156380939|ref|XP_001632024.1|1.168e-2930.10predicted protein [Nematostella vectensis] >gi|156... [more]
gi|659094165|ref|XP_008447917.1|1.392e-2930.08PREDICTED: DDB1- and CUL4-associated factor 8 [Cuc... [more]
gi|1028984384|ref|XP_016737499.1|2.191e-2929.02PREDICTED: DDB1- and CUL4-associated factor 8-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6022rna6022Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications