rna6021, rna6021 (mRNA) Nannochloropsis gaditana

Overview
Namerna6021
Unique Namerna6021
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1182
Alignment locationCM002467.1:388497..389697 -

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Properties
Property NameValue
ProductUncharacterized protein family UPF0001
Orig transcript idgnl|cribi|Naga_100055g33.7322.mrna
Orig protein idgnl|cribi|Naga_100055g33.7322
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:388497..389697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g33gene5817Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24638.1cds6006Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6021rna6021-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6021 ID=rna6021|Name=rna6021|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp
AGAGAACATTCTGAAATCAACTGAGTGGGCTTTCTTAAAACATCTCTGCG
AGATACATAATACATAATCATTCTACTTGCATAAAATTGACCTTGAACGT
TACAGCGATATGGTGTAAAGATGATTGCCAAATATACGTTTTAAAAGCGT
AAATGTATTCCTTTTGCTTTACTTTATATCATGAGCAAGCACAGTGAATC
TGATGACAACGTCGTTCTGCCGCGACTTCTTGTGACATATGCTACTTTTG
ATGTATCTGTCTTGATAACTCTTTATAATGCTCCTACGCCGTAAGGGAAG
CTACTCCACGTTTCCTTTGGCTACATGCGCGTCAAATCAAAATCTCCTAC
GCTCATTTCAACTTGAGTAAGGGATTTCGGACTGTGGTTTCAGGCATTCT
CATGGTTTAATGCAACAACAGATGCAGCATTCCTTAGAGTGTAAACATGA
TCCTAAGCGACGAGGTCTAAAGCGCAGTTTGCGAAGAGGTTTCCCGTTGT
GTAGCGTTTAAGAACAAAAGGTGTCCTGAAGTCATTTTCACAAGTAAAGC
ACAATGTTGTGCATATGATGAAATTGGAATGCGTGAGTTTCGTGCATTGC
CATGACAACGGTGACAATTTGGACACAATTTATCCTGTCAAGGCGAAGAA
GTCGTCACCACCTATTTTACTTCTGAGATATGTCGCCGTAATAATAAATG
CGCGATATTCATGGTCACTGAAGATCGTTGACTCAGCGATTCCCCTACAG
CACTTCCGGTCCCCATCCGAAACTAACATCTTAATGCGTAAGGCTGTGCG
AAAAGCTACGCCTTTTTCTACCGCGGGGCGTCTTCAACCACACAAAACTA
AAGGGACCTATGACAGCAAGAGTTGGTGACTTTTTTCTTACGATGATGTG
GCAAAGATAAGGCACGGATATTATTGAACTATGATGGGAGTTAAGGTCAC
ATGTAGCACCTTCGTGCGGGGACGGAAGAATAGCTGAAGATCCCAAAAGA
CCGTGAAGTGCCCTTGTTGGTAAAACAAGCACGATGTGAACTCTAAGTCA
GCACACAATCTTAAACGCTACACCTCTGGCAGCACGGAGTTTTCCTGCAC
CATTAGCTCTGATTCTTTATTCTTTCAAGTATTCTGTTGCACACAATCAT
TTCGATTTTGACTCTCCTTCATTATATTCTGC
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protein sequence of rna6021

>rna6021-protein ID=rna6021-protein|Name=rna6021|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPA
VLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPP
PRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFI
GHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERL
KILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDM
TCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGST
IFGARQYRSKEEPPVAEYNEGESKSK
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mRNA from alignment at CM002467.1:388497..389697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6021 ID=rna6021|Name=rna6021|organism=Nannochloropsis gaditana|type=mRNA|length=1201bp|location=Sequence derived from alignment at CM002467.1:388497..389697- (Nannochloropsis gaditana)
CCTACCAACGTCACTCTTTCACCACCCTGTGCCACAAACAGGTCGTCAGT
CCTCACATGACAAGGCGGCGCTTTTCCGTCAACAAATCTTCCATCACCTA
TTTCACGTGGTGCTTCCTCTTCCTTTCCAATTCATTGGCACGTGCCGTTC
TCTGTGGCATGCTTCAATCCCCAACTACAGCTTTCTTCTTCCCTCTCCGA
CCTGCGGTGTTGCGCGGCCGGACCGTTGTCGTCAGCTCCCTCACTCGACA
CCAACGTTTGCATAGCTTTGCCACCATGAATTGTGGTACAGTAGGAGAGA
ATCTAGCGAGGGTTCGACACCGTGTCAAGGAGGTGGCCAAGGGCCTAGAA
CCTCCCCCTCGTTTGGTGGCAGTTAGCAAGACCAAGCCTGTTGCTGCTTT
GAAAGAAGCTTACGATGCTGGACAGCGACATTTTGGAGAAAATTATTCCC
ATGAGGTATTAGAGAAGGCGCCTGAGCTCCCAGATGACGTGAAGTGGCAC
TTCATCGGGCATTTGCAATCCAATAAGGCCAAGGCGTTGGTGGAGCAGGT
TCCAAACCTGTGGATGGTGGAGGCAGTCGACTCGATCAAGCTTGCTGACC
GCCTTCAAGCCGCAACAGCTGGTGTACTTGAAACAAGACGCAAGGGAGAG
CGTCTTAAGATCCTGGTGCAAATTGACACGAGTGGGGAAGCTACCAAGTC
GGGAAAGAGGACAGAGGACGCCGCAGTTATAGCCCAGCATGTGACGGCGC
AATGCCCCGCCCTCCAGTTTGCGGGTGTCATGACTATCGGCGCTTCCGGT
GACATGACTTGTTTCGATAAGCTGGTCGATGCACGAGAAGCGATTGCGCG
TGCCACAGGACTTGACGCCGCGTCCCTCGAGCTGAGTATGGGCATGTCTA
ATGACTTCGAAGAGGCCATCGCGCGCGGAAGCACCAATATTCGTGTGGGC
AGTACAATATTTGGAGCAAGGCAGTATAGGTCGAAGGAAGAACCGCCTGT
TGCAGAATATAATGAAGGAGAGTCAAAATCGAAATGATTGTGTGCAACAG
AATACTTGAAAGAATAAAGAATCAGAGCTAATGGTGCAGGAAAACTCCGT
GCTGCCAGAGGTGTAGCGTTTAAGATTGTGTGCTGACTTAGAGTTCACAT
CGTGCTTGTTTTACCAACAAGGGCACTTCACGGTCTTTTGGGATCTTCAG
C
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Coding sequence (CDS) from alignment at CM002467.1:388497..389697-

>rna6021 ID=rna6021|Name=rna6021|organism=Nannochloropsis gaditana|type=CDS|length=981bp|location=Sequence derived from alignment at CM002467.1:388497..389697- (Nannochloropsis gaditana)
ATGACAAGGCGGCGCTTTTCCGTCAACAAATCTTCCATCACCTATTTCAC
GTGGTGCTTCCTCTTCCTTTCCAATTCATTGGCACGTGCCGTTCTCTGTG
GCATGCTTCAATCCCCAACTACAGCTTTCTTCTTCCCTCTCCGACCTGCG
GTGTTGCGCGGCCGGACCGTTGTCGTCAGCTCCCTCACTCGACACCAACG
TTTGCATAGCTTTGCCACCATGAATTGTGGTACAGTAGGAGAGAATCTAG
CGAGGGTTCGACACCGTGTCAAGGAGGTGGCCAAGGGCCTAGAACCTCCC
CCTCGTTTGGTGGCAGTTAGCAAGACCAAGCCTGTTGCTGCTTTGAAAGA
AGCTTACGATGCTGGACAGCGACATTTTGGAGAAAATTATTCCCATGAGG
TATTAGAGAAGGCGCCTGAGCTCCCAGATGACGTGAAGTGGCACTTCATC
GGGCATTTGCAATCCAATAAGGCCAAGGCGTTGGTGGAGCAGGTTCCAAA
CCTGTGGATGGTGGAGGCAGTCGACTCGATCAAGCTTGCTGACCGCCTTC
AAGCCGCAACAGCTGGTGTACTTGAAACAAGACGCAAGGGAGAGCGTCTT
AAGATCCTGGTGCAAATTGACACGAGTGGGGAAGCTACCAAGTCGGGAAA
GAGGACAGAGGACGCCGCAGTTATAGCCCAGCATGTGACGGCGCAATGCC
CCGCCCTCCAGTTTGCGGGTGTCATGACTATCGGCGCTTCCGGTGACATG
ACTTGTTTCGATAAGCTGGTCGATGCACGAGAAGCGATTGCGCGTGCCAC
AGGACTTGACGCCGCGTCCCTCGAGCTGAGTATGGGCATGTCTAATGACT
TCGAAGAGGCCATCGCGCGCGGAAGCACCAATATTCGTGTGGGCAGTACA
ATATTTGGAGCAAGGCAGTATAGGTCGAAGGAAGAACCGCCTGTTGCAGA
ATATAATGAAGGAGAGTCAAAATCGAAATGA
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Synonyms
Publications