EWM24638.1, cds6006 (CDS) Nannochloropsis gaditana

Overview
NameEWM24638.1
Unique Namecds6006
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:388661..389641 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24638.1
ProductUncharacterized protein family UPF0001
Orig transcript idgnl|cribi|Naga_100055g33.7322.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:388661..389641 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR029066PLP-binding_barrel
IPR011078UPF0001
IPR001608Ala_racemase_N
Homology
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|585106160|gb|EWM24638.1| (Uncharacterized protein family UPF0001 [Nannochloropsis gaditana])

HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK 326
            MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK
Sbjct:    1 MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK 326          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|299472696|emb|CBN79867.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 268.855 bits (686), Expect = 2.934e-86
Identity = 135/238 (56.72%), Postives = 178/238 (74.79%), Query Frame = 0
Query:   79 VGENLARVRHRVKEV---AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTED---AAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSK 310
            + +NL  VR RV+EV    +  +P PRLVAVSKTKP+  L++AYDAGQR FGENY+ E+++K+P++PDDV WHFIGHLQSNKAKALV  VPNL ++E +D++KLA++LQ+A    + + RK   L + +QIDTSGE +K+G    D      +A+H+   CPAL+  G+MTIGA GDM CFD+L   R+A+A   G++A +LELSMGMS D+EEAI RGSTN+RVGSTIFGAR Y +K
Sbjct:   18 IADNLEAVRKRVEEVTGEGEAGKPVPRLVAVSKTKPLENLQDAYDAGQRIFGENYAQELIDKSPQMPDDVVWHFIGHLQSNKAKALVAGVPNLAVLETLDTVKLANKLQSA---CVSSERK-RPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTIGAPGDMECFDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGARFYPNK 251          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|1173931646|gb|OQR83979.1| (proline synthetase co-transcribed bacterial protein [Achlya hypogyna])

HSP 1 Score: 255.758 bits (652), Expect = 2.348e-81
Identity = 133/237 (56.12%), Postives = 166/237 (70.04%), Query Frame = 0
Query:   78 TVGENLARVRHRVKEVAKGLEPPP-----RLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
            +V  NL  VR +V   A+ L   P      LVAVSKTKPVA ++EAY   QRHFGENY  E++EKAP  P D++WHFIGHLQSNK KALV  VPNL+MVE+VDS+KLA++L +A       +  G RL +LVQ++TSGE  KSG   ED   +AQH+ + C  L+F+G+MTIG   D T  CF KLV  R+A+  A G+D  +LELSMGMS+DF+ AIA GST++RVGSTIFGAR Y
Sbjct:    2 SVARNLQHVRAKV---AEALATSPWKQQCTLVAVSKTKPVADIEEAYSQDQRHFGENYIQELVEKAPLCPTDIQWHFIGHLQSNKVKALVTGVPNLYMVESVDSVKLANKLDSAWG----QQGSGRRLPVLVQVNTSGEVQKSGVAPEDCVALAQHIASSCTHLKFSGLMTIGRFDDETDDCFVKLVACRKAVGAALGVDEKTLELSMGMSDDFQSAIAHGSTHVRVGSTIFGARNY 231          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|971516136|dbj|GAQ82060.1| (hypothetical protein KFL_000990090 [Klebsormidium nitens])

HSP 1 Score: 254.218 bits (648), Expect = 1.046e-80
Identity = 134/238 (56.30%), Postives = 164/238 (68.91%), Query Frame = 0
Query:   79 VGENLARVRHRVKEVAK--GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTC----FDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSK 310
            VG+ L  V  +V++ A+  G   PPRLVAVSKTKPV+ L EAY+AGQRHFGENY  E+LEKAPE+P DV WHFIGHLQSNKAKALV+ VPNL+ VE VDS K+A+ L  A  G     ++ E+LK++VQ++TSGE TK G    +   +A+HV  QCP L+ AG+MTIG   D T     F  L+D R+ + R   L    LELSMGMS DFE A   GSTN+RVGS+IFGAR Y  K
Sbjct:   10 VGKALRDVLAKVQKAAEKAGRSQPPRLVAVSKTKPVSMLMEAYNAGQRHFGENYVQELLEKAPEMPRDVHWHFIGHLQSNKAKALVQAVPNLYSVETVDSEKIANHLNRACEGA----QRDEKLKVMVQVNTSGEETKYGVEPNECVDLAKHVHNQCPNLRLAGLMTIGML-DYTSKPENFQMLLDCRQRVCRELDLPEDDLELSMGMSQDFEAATEMGSTNVRVGSSIFGARDYSQK 242          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|813143260|ref|XP_012199575.1| (YggS family pyridoxal phosphate enzyme [Saprolegnia parasitica CBS 223.65] >gi|641535606|gb|KDO29509.1| YggS family pyridoxal phosphate enzyme [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 250.366 bits (638), Expect = 2.612e-79
Identity = 132/234 (56.41%), Postives = 163/234 (69.66%), Query Frame = 0
Query:   78 TVGENLARVRHRVKEV--AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
            +V  NL  VR +V E   A   +    LVAVSKTKPVA ++EAY+ GQRHFGENY  E++EKAP  P D++WHFIGHLQSNK KALV  VP+L+MVE+VDS+KLA++L +A A    T+  G+ L +LVQ++TSGE  KSG   ED   +A H+ A C  L F G+MTIG   D T  CF KLV  R+ +  A G+D A+L LSMGMS+DFE AIA GST +RVGSTIFG R Y
Sbjct:    2 SVTRNLQHVRAKVAEALAASPWKQQCTLVAVSKTKPVADVEEAYNQGQRHFGENYIQELVEKAPLCPADIQWHFIGHLQSNKVKALVTGVPSLYMVESVDSVKLANKLDSAWA----TKGTGKPLAVLVQVNTSGEEQKSGVAPEDCVALASHIQASCANLAFQGLMTIGRFDDETDDCFVKLVACRKEVGAALGIDEAALALSMGMSDDFESAIAHGSTYVRVGSTIFGRRNY 231          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|922862666|gb|KOO30230.1| (hypothetical protein Ctob_004351 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 250.751 bits (639), Expect = 3.671e-79
Identity = 123/234 (52.56%), Postives = 166/234 (70.94%), Query Frame = 0
Query:   78 TVGENLARVRHRVKEVAKGLE-PPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSG-EATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRS 309
            ++   L  VR ++ E A   + P PRLVAVSKTKPV  L+EAYDAG R FGENY  E++ KAPE+PDDV W FIG LQSNKAK LV  VP+L  +E +DS+KLADRLQ A   +  + R+   L +++Q++TS  E +K+G   E+A  +A HV  +CP+L+  G+MTIG  G++ CFD L   R+A+A   G++A SLELSMGMS DFE A+A+GS ++RVGS+IFGAR+ ++
Sbjct:   18 SIASALGNVRQKLAEAASAAKRPAPRLVAVSKTKPVELLREAYDAGVRDFGENYVQELVSKAPEMPDDVAWRFIGSLQSNKAKTLVHGVPSLACIETLDSVKLADRLQKAMDDL--SPRRATPLGVMIQVNTSPWEGSKNGVLAEEAQALAMHVVVKCPSLRLCGLMTIGEPGNLACFDTLRSCRDAVAAQLGVEAGSLELSMGMSGDFEAAVAKGSDSVRVGSSIFGAREKKA 249          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|669143994|ref|XP_008607559.1| (YggS family pyridoxal phosphate enzyme [Saprolegnia diclina VS20] >gi|530740493|gb|EQC38735.1| YggS family pyridoxal phosphate enzyme [Saprolegnia diclina VS20])

HSP 1 Score: 247.669 bits (631), Expect = 2.738e-78
Identity = 130/234 (55.56%), Postives = 161/234 (68.80%), Query Frame = 0
Query:   78 TVGENLARVRHRVKEV--AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
            +V  NL  VR +V E   A   +    LVAVSKTKPVA ++EAY+ GQRHFGENY  E++EKAP  P D++WHFIGHLQSNK K L+  VPNL+MVE+VDS+KLA++L +A A     +  G+ L +LVQ++TSGE  KSG   ED   +A H+   C  L F G+MTIG   D T  CF KLV  R+ I+ A G+D A+L LSMGMS+DFE AIA GST +RVGSTIFG R Y
Sbjct:    2 SVSRNLQHVRAKVAEALAASPWKQQCTLVAVSKTKPVADVEEAYNQGQRHFGENYIQELVEKAPLCPADIQWHFIGHLQSNKVKTLITGVPNLFMVESVDSVKLANKLDSAWA----MKGTGKPLPVLVQVNTSGEEQKSGVAPEDCVALASHIKTSCANLAFQGLMTIGRFDDETDDCFLKLVACRQEISVALGIDEAALALSMGMSDDFESAIAHGSTYVRVGSTIFGRRNY 231          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|566027793|gb|ETI50704.1| (YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P1569] >gi|567965052|gb|ETK90525.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|567993765|gb|ETL43935.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|568023071|gb|ETL97135.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|568053463|gb|ETM50291.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|570955293|gb|ETP20479.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica CJ01A1])

HSP 1 Score: 247.669 bits (631), Expect = 3.921e-78
Identity = 133/238 (55.88%), Postives = 167/238 (70.17%), Query Frame = 0
Query:   78 TVGENLARVRHRVKE-VAK-GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
            TV +NL  VR +V E VAK   +    LVAVSKTKPV  L+EAYDA QRHFGENY  E+++KAP LP D+KWH+IGH+QSNKAK LV  VPNL++VE VDSIK+A+ L  A+ G   T    E+L ++VQ++TS E  KSG  T+ +  +A+H+ A C  L   G+MTIG  GD+T  CFD+LV  R+ +A A G     L+LSMGMS DFE AI+ GST++RVGSTIFGAR Y  KE
Sbjct:    2 TVAKNLLAVRAKVAEAVAKSAWKQQCTLVAVSKTKPVEDLQEAYDADQRHFGENYIQELVQKAPLLPADIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKAS-GEFRT----EKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDITSKCFDRLVACRKKVAEAIGKAETDLDLSMGMSGDFELAISCGSTHVRVGSTIFGARNYAKKE 234          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|675188957|ref|XP_008903363.1| (YggS family pyridoxal phosphate enzyme [Phytophthora parasitica INRA-310] >gi|568096834|gb|ETN11581.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica INRA-310] >gi|570331433|gb|ETO79381.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P1976] >gi|570990414|gb|ETP48370.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P10297] >gi|970631423|gb|KUF78032.1| Proline synthase co-transcribed bacterial protein [Phytophthora nicotianae] >gi|970660735|gb|KUF98260.1| COP9 signalosome complex subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 246.514 bits (628), Expect = 8.767e-78
Identity = 133/238 (55.88%), Postives = 166/238 (69.75%), Query Frame = 0
Query:   78 TVGENLARVRHRVKE-VAK-GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
            TV +NL  VR +V E VAK   +    LVAVSKTKPV  L+EAYDA QRHFGENY  E+++KAP LP D+KWH+IGH+QSNKAK LV  VPNL++VE VDSIK+A+ L  A+ G   T    E+L ++VQ++TS E  KSG  T+ +  +A+H+ A C  L   G+MTIG  GD T  CFD+LV  R+ +A A G     L+LSMGMS DFE AI+ GST++RVGSTIFGAR Y  KE
Sbjct:    2 TVAKNLLAVRAKVAEAVAKSAWKQQCTLVAVSKTKPVEDLQEAYDADQRHFGENYIQELVQKAPLLPADIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKAS-GEFRT----EKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDTTSKCFDRLVACRKKVAEAIGKAETDLDLSMGMSGDFELAISCGSTHVRVGSTIFGARNYAKKE 234          
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|926787787|ref|XP_013902367.1| (hypothetical protein MNEG_4609 [Monoraphidium neglectum] >gi|761973033|gb|KIZ03348.1| hypothetical protein MNEG_4609 [Monoraphidium neglectum])

HSP 1 Score: 246.514 bits (628), Expect = 1.479e-77
Identity = 133/239 (55.65%), Postives = 158/239 (66.11%), Query Frame = 0
Query:   78 TVGENLARVRHRVKEVAK--GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGA---SGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
            +V + L  V  RV+      G   PPRLVAVSKTKP  A++EAYDAG R FGENY  E+L+KAP LP D++WHFIGHLQSNK KALVE VPNL M+E VDS KLADR+    AG     RK E L + VQ++TSGE +K G    D   +A HV   CP L+ AG+MTIG    S     F+ L   R+ +A A G+    LELSMGMS DFE AIA GSTN+RVGSTIFGAR Y +K+
Sbjct:   11 SVADALQDVAQRVEAAGSKAGRAKPPRLVAVSKTKPAEAVREAYDAGHRTFGENYVQELLDKAPLLPSDIQWHFIGHLQSNKVKALVEGVPNLSMIETVDSAKLADRIDRCVAG---AGRK-EPLAVAVQVNTSGEESKYGVEPADVVALATHVAKACPHLRLAGLMTIGMPDYSSRPENFECLAKCRDEVAAALGMSPDDLELSMGMSGDFEAAIAMGSTNVRVGSTIFGARDYSAKK 245          
The following BLAST results are available for this feature:
BLAST of EWM24638.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106160|gb|EWM24638.1|0.000e+0100.00Uncharacterized protein family UPF0001 [Nannochlor... [more]
gi|299472696|emb|CBN79867.1|2.934e-8656.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173931646|gb|OQR83979.1|2.348e-8156.12proline synthetase co-transcribed bacterial protei... [more]
gi|971516136|dbj|GAQ82060.1|1.046e-8056.30hypothetical protein KFL_000990090 [Klebsormidium ... [more]
gi|813143260|ref|XP_012199575.1|2.612e-7956.41YggS family pyridoxal phosphate enzyme [Saprolegni... [more]
gi|922862666|gb|KOO30230.1|3.671e-7952.56hypothetical protein Ctob_004351 [Chrysochromulina... [more]
gi|669143994|ref|XP_008607559.1|2.738e-7855.56YggS family pyridoxal phosphate enzyme [Saprolegni... [more]
gi|566027793|gb|ETI50704.1|3.921e-7855.88YggS family pyridoxal phosphate enzyme [Phytophtho... [more]
gi|675188957|ref|XP_008903363.1|8.767e-7855.88YggS family pyridoxal phosphate enzyme [Phytophtho... [more]
gi|926787787|ref|XP_013902367.1|1.479e-7755.65hypothetical protein MNEG_4609 [Monoraphidium negl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6021rna6021Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications