EWM24638.1, cds6006 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|585106160|gb|EWM24638.1| (Uncharacterized protein family UPF0001 [Nannochloropsis gaditana]) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query: 1 MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK 326
MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK
Sbjct: 1 MTRRRFSVNKSSITYFTWCFLFLSNSLARAVLCGMLQSPTTAFFFPLRPAVLRGRTVVVSSLTRHQRLHSFATMNCGTVGENLARVRHRVKEVAKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKEEPPVAEYNEGESKSK 326
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|299472696|emb|CBN79867.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 268.855 bits (686), Expect = 2.934e-86 Identity = 135/238 (56.72%), Postives = 178/238 (74.79%), Query Frame = 0
Query: 79 VGENLARVRHRVKEV---AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTED---AAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSK 310
+ +NL VR RV+EV + +P PRLVAVSKTKP+ L++AYDAGQR FGENY+ E+++K+P++PDDV WHFIGHLQSNKAKALV VPNL ++E +D++KLA++LQ+A + + RK L + +QIDTSGE +K+G D +A+H+ CPAL+ G+MTIGA GDM CFD+L R+A+A G++A +LELSMGMS D+EEAI RGSTN+RVGSTIFGAR Y +K
Sbjct: 18 IADNLEAVRKRVEEVTGEGEAGKPVPRLVAVSKTKPLENLQDAYDAGQRIFGENYAQELIDKSPQMPDDVVWHFIGHLQSNKAKALVAGVPNLAVLETLDTVKLANKLQSA---CVSSERK-RPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTIGAPGDMECFDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGARFYPNK 251
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|1173931646|gb|OQR83979.1| (proline synthetase co-transcribed bacterial protein [Achlya hypogyna]) HSP 1 Score: 255.758 bits (652), Expect = 2.348e-81 Identity = 133/237 (56.12%), Postives = 166/237 (70.04%), Query Frame = 0
Query: 78 TVGENLARVRHRVKEVAKGLEPPP-----RLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
+V NL VR +V A+ L P LVAVSKTKPVA ++EAY QRHFGENY E++EKAP P D++WHFIGHLQSNK KALV VPNL+MVE+VDS+KLA++L +A + G RL +LVQ++TSGE KSG ED +AQH+ + C L+F+G+MTIG D T CF KLV R+A+ A G+D +LELSMGMS+DF+ AIA GST++RVGSTIFGAR Y
Sbjct: 2 SVARNLQHVRAKV---AEALATSPWKQQCTLVAVSKTKPVADIEEAYSQDQRHFGENYIQELVEKAPLCPTDIQWHFIGHLQSNKVKALVTGVPNLYMVESVDSVKLANKLDSAWG----QQGSGRRLPVLVQVNTSGEVQKSGVAPEDCVALAQHIASSCTHLKFSGLMTIGRFDDETDDCFVKLVACRKAVGAALGVDEKTLELSMGMSDDFQSAIAHGSTHVRVGSTIFGARNY 231
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|971516136|dbj|GAQ82060.1| (hypothetical protein KFL_000990090 [Klebsormidium nitens]) HSP 1 Score: 254.218 bits (648), Expect = 1.046e-80 Identity = 134/238 (56.30%), Postives = 164/238 (68.91%), Query Frame = 0
Query: 79 VGENLARVRHRVKEVAK--GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTC----FDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSK 310
VG+ L V +V++ A+ G PPRLVAVSKTKPV+ L EAY+AGQRHFGENY E+LEKAPE+P DV WHFIGHLQSNKAKALV+ VPNL+ VE VDS K+A+ L A G ++ E+LK++VQ++TSGE TK G + +A+HV QCP L+ AG+MTIG D T F L+D R+ + R L LELSMGMS DFE A GSTN+RVGS+IFGAR Y K
Sbjct: 10 VGKALRDVLAKVQKAAEKAGRSQPPRLVAVSKTKPVSMLMEAYNAGQRHFGENYVQELLEKAPEMPRDVHWHFIGHLQSNKAKALVQAVPNLYSVETVDSEKIANHLNRACEGA----QRDEKLKVMVQVNTSGEETKYGVEPNECVDLAKHVHNQCPNLRLAGLMTIGML-DYTSKPENFQMLLDCRQRVCRELDLPEDDLELSMGMSQDFEAATEMGSTNVRVGSSIFGARDYSQK 242
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|813143260|ref|XP_012199575.1| (YggS family pyridoxal phosphate enzyme [Saprolegnia parasitica CBS 223.65] >gi|641535606|gb|KDO29509.1| YggS family pyridoxal phosphate enzyme [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 250.366 bits (638), Expect = 2.612e-79 Identity = 132/234 (56.41%), Postives = 163/234 (69.66%), Query Frame = 0
Query: 78 TVGENLARVRHRVKEV--AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
+V NL VR +V E A + LVAVSKTKPVA ++EAY+ GQRHFGENY E++EKAP P D++WHFIGHLQSNK KALV VP+L+MVE+VDS+KLA++L +A A T+ G+ L +LVQ++TSGE KSG ED +A H+ A C L F G+MTIG D T CF KLV R+ + A G+D A+L LSMGMS+DFE AIA GST +RVGSTIFG R Y
Sbjct: 2 SVTRNLQHVRAKVAEALAASPWKQQCTLVAVSKTKPVADVEEAYNQGQRHFGENYIQELVEKAPLCPADIQWHFIGHLQSNKVKALVTGVPSLYMVESVDSVKLANKLDSAWA----TKGTGKPLAVLVQVNTSGEEQKSGVAPEDCVALASHIQASCANLAFQGLMTIGRFDDETDDCFVKLVACRKEVGAALGIDEAALALSMGMSDDFESAIAHGSTYVRVGSTIFGRRNY 231
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|922862666|gb|KOO30230.1| (hypothetical protein Ctob_004351 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 250.751 bits (639), Expect = 3.671e-79 Identity = 123/234 (52.56%), Postives = 166/234 (70.94%), Query Frame = 0
Query: 78 TVGENLARVRHRVKEVAKGLE-PPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSG-EATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRS 309
++ L VR ++ E A + P PRLVAVSKTKPV L+EAYDAG R FGENY E++ KAPE+PDDV W FIG LQSNKAK LV VP+L +E +DS+KLADRLQ A + + R+ L +++Q++TS E +K+G E+A +A HV +CP+L+ G+MTIG G++ CFD L R+A+A G++A SLELSMGMS DFE A+A+GS ++RVGS+IFGAR+ ++
Sbjct: 18 SIASALGNVRQKLAEAASAAKRPAPRLVAVSKTKPVELLREAYDAGVRDFGENYVQELVSKAPEMPDDVAWRFIGSLQSNKAKTLVHGVPSLACIETLDSVKLADRLQKAMDDL--SPRRATPLGVMIQVNTSPWEGSKNGVLAEEAQALAMHVVVKCPSLRLCGLMTIGEPGNLACFDTLRSCRDAVAAQLGVEAGSLELSMGMSGDFEAAVAKGSDSVRVGSSIFGAREKKA 249
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|669143994|ref|XP_008607559.1| (YggS family pyridoxal phosphate enzyme [Saprolegnia diclina VS20] >gi|530740493|gb|EQC38735.1| YggS family pyridoxal phosphate enzyme [Saprolegnia diclina VS20]) HSP 1 Score: 247.669 bits (631), Expect = 2.738e-78 Identity = 130/234 (55.56%), Postives = 161/234 (68.80%), Query Frame = 0
Query: 78 TVGENLARVRHRVKEV--AKGLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
+V NL VR +V E A + LVAVSKTKPVA ++EAY+ GQRHFGENY E++EKAP P D++WHFIGHLQSNK K L+ VPNL+MVE+VDS+KLA++L +A A + G+ L +LVQ++TSGE KSG ED +A H+ C L F G+MTIG D T CF KLV R+ I+ A G+D A+L LSMGMS+DFE AIA GST +RVGSTIFG R Y
Sbjct: 2 SVSRNLQHVRAKVAEALAASPWKQQCTLVAVSKTKPVADVEEAYNQGQRHFGENYIQELVEKAPLCPADIQWHFIGHLQSNKVKTLITGVPNLFMVESVDSVKLANKLDSAWA----MKGTGKPLPVLVQVNTSGEEQKSGVAPEDCVALASHIKTSCANLAFQGLMTIGRFDDETDDCFLKLVACRQEISVALGIDEAALALSMGMSDDFESAIAHGSTYVRVGSTIFGRRNY 231
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|566027793|gb|ETI50704.1| (YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P1569] >gi|567965052|gb|ETK90525.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|567993765|gb|ETL43935.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|568023071|gb|ETL97135.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|568053463|gb|ETM50291.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica] >gi|570955293|gb|ETP20479.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica CJ01A1]) HSP 1 Score: 247.669 bits (631), Expect = 3.921e-78 Identity = 133/238 (55.88%), Postives = 167/238 (70.17%), Query Frame = 0
Query: 78 TVGENLARVRHRVKE-VAK-GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
TV +NL VR +V E VAK + LVAVSKTKPV L+EAYDA QRHFGENY E+++KAP LP D+KWH+IGH+QSNKAK LV VPNL++VE VDSIK+A+ L A+ G T E+L ++VQ++TS E KSG T+ + +A+H+ A C L G+MTIG GD+T CFD+LV R+ +A A G L+LSMGMS DFE AI+ GST++RVGSTIFGAR Y KE
Sbjct: 2 TVAKNLLAVRAKVAEAVAKSAWKQQCTLVAVSKTKPVEDLQEAYDADQRHFGENYIQELVQKAPLLPADIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKAS-GEFRT----EKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDITSKCFDRLVACRKKVAEAIGKAETDLDLSMGMSGDFELAISCGSTHVRVGSTIFGARNYAKKE 234
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|675188957|ref|XP_008903363.1| (YggS family pyridoxal phosphate enzyme [Phytophthora parasitica INRA-310] >gi|568096834|gb|ETN11581.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica INRA-310] >gi|570331433|gb|ETO79381.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P1976] >gi|570990414|gb|ETP48370.1| YggS family pyridoxal phosphate enzyme [Phytophthora parasitica P10297] >gi|970631423|gb|KUF78032.1| Proline synthase co-transcribed bacterial protein [Phytophthora nicotianae] >gi|970660735|gb|KUF98260.1| COP9 signalosome complex subunit 2 [Phytophthora nicotianae]) HSP 1 Score: 246.514 bits (628), Expect = 8.767e-78 Identity = 133/238 (55.88%), Postives = 166/238 (69.75%), Query Frame = 0
Query: 78 TVGENLARVRHRVKE-VAK-GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMT--CFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
TV +NL VR +V E VAK + LVAVSKTKPV L+EAYDA QRHFGENY E+++KAP LP D+KWH+IGH+QSNKAK LV VPNL++VE VDSIK+A+ L A+ G T E+L ++VQ++TS E KSG T+ + +A+H+ A C L G+MTIG GD T CFD+LV R+ +A A G L+LSMGMS DFE AI+ GST++RVGSTIFGAR Y KE
Sbjct: 2 TVAKNLLAVRAKVAEAVAKSAWKQQCTLVAVSKTKPVEDLQEAYDADQRHFGENYIQELVQKAPLLPADIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKAS-GEFRT----EKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDTTSKCFDRLVACRKKVAEAIGKAETDLDLSMGMSGDFELAISCGSTHVRVGSTIFGARNYAKKE 234
BLAST of EWM24638.1 vs. NCBI_GenBank
Match: gi|926787787|ref|XP_013902367.1| (hypothetical protein MNEG_4609 [Monoraphidium neglectum] >gi|761973033|gb|KIZ03348.1| hypothetical protein MNEG_4609 [Monoraphidium neglectum]) HSP 1 Score: 246.514 bits (628), Expect = 1.479e-77 Identity = 133/239 (55.65%), Postives = 158/239 (66.11%), Query Frame = 0
Query: 78 TVGENLARVRHRVKEVAK--GLEPPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGA---SGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQYRSKE 311
+V + L V RV+ G PPRLVAVSKTKP A++EAYDAG R FGENY E+L+KAP LP D++WHFIGHLQSNK KALVE VPNL M+E VDS KLADR+ AG RK E L + VQ++TSGE +K G D +A HV CP L+ AG+MTIG S F+ L R+ +A A G+ LELSMGMS DFE AIA GSTN+RVGSTIFGAR Y +K+
Sbjct: 11 SVADALQDVAQRVEAAGSKAGRAKPPRLVAVSKTKPAEAVREAYDAGHRTFGENYVQELLDKAPLLPSDIQWHFIGHLQSNKVKALVEGVPNLSMIETVDSAKLADRIDRCVAG---AGRK-EPLAVAVQVNTSGEESKYGVEPADVVALATHVAKACPHLRLAGLMTIGMPDYSSRPENFECLAKCRDEVAAALGMSPDDLELSMGMSGDFEAAIAMGSTNVRVGSTIFGARDYSAKK 245 The following BLAST results are available for this feature:
BLAST of EWM24638.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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