rna6018, rna6018 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6018
Unique Name	rna6018
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1293
Alignment location	CM002467.1:378534..381459 -

Link to JBrowse

Properties


Property Name	Value
Product	Transport protein particle (TRAPP) component
Orig transcript id	gnl\|cribi\|Naga_100055g36.7321.mrna
Orig protein id	gnl\|cribi\|Naga_100055g36.7321
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:378534..381459 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g36	gene5814	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6018	rna6018-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24637.1	cds6003	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:378534..381459-
coding sequence from alignment at CM002467.1:378534..381459-

mRNA sequence

>rna6018 ID=rna6018|Name=rna6018|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp
ATGTTCCACTCAATCTCACAGACCCATCATAACCGTGTATAAAGATAGGT
GATTACACCCGTGTCACTTAACCAACAGTCGCCCGCTGGGTAGCTTCAAC
TATTCGCGTGGGGAACGTAATATGGAAGCTAGATGTTTCGGGCTTTGGCT
TCTCGTTGCCTGCTGCTTTATACCTGTCCAAAGTTTCATGCCACGGCCTA
GCAAGCAAGTCAACTGCTGCCCTCATACAGCTCAAAATATGAAGGATGTT
GGCTGTAGCAGCTGGGTGGACAGTCGAGTTGGAACGTCGTCGTCCAACGG
TCGCTGCAGCCGCGGCTCCACCTCCCTGTCCTCCACAATATCCACGGCCG
ACGGGACGTCGGACGTTGAGTCGACCGCGGTAAGCAAGAGGACTGGCATC
AAGGAATCTGATATGATAGGAAATGGTGTAAATGTCGGTGCTGCTGCCAT
GGAAGACGTCGGTCGTGGCGCCAAAGATGAGCTGATAAGCCTTGTTTCGG
AAGGCATGCTGGATTTTTCCTCTCCCATGAAACGAGCATCTGTCAACGAG
CTTTTGTTGCGACTCGAGGCTTTAAATCCTACACCCATGCCTGCTTATTC
ATCCCTTTTGAATGGGGCTTGGGAATTTCTGTGGACTGGTGGAATCTCTC
CCGGCATCCTGGGATTGCAATTGGCGTCGCGACTCTCAACCTACGCCAGC
GGAGCAGTGGAGGTTGGAGAGACAGTCCTCACAATAAGCCGTGCTCAACC
TCGTGTCGAGGTCCAGACCTCCCTCAAAGTTTTTGGAAGGGAAAATCGAA
TAAATATCCGCACTCGACTAGAGCCGGCCTCGGGATTGCGATTGGAGGAG
ACCTACACGGAGGCAAGCATGGGCAATCTTCGCGTCCCATTTCCTGATCA
AGAACAGATCTTCAAGCGGCCACTGTTTGTTTCCTACCTTGATGACGATT
TGCTCGTCGTTCGGGACAGTTTCGGAGCCCCCGATATTCTAATTCGCAAA
GACAAAGCATTTCTGAGCAATACCGGAGTTCCTTCCGCAACGGACGATGA
CACAAGTCCTGGCGCTGGCTAATTTAAAAGCAATGAAATGTGAATAGGAA
CTATGGAAATTCAAAAAGTCAGAGGGAAGAAGAAGAGTCCTCCTGAGAAA
TTCTGATGAGGGGGTAAGGATGGAAGAGGATCAGATCGGTATTTTTTTAA
AGGGGATTGGAAAAGTTCTGGAAGAAATGCACAGTACGAAGTATTATTTG
ACACTTGTATCAAAGAAAGGATGACAACGCACTTCTTACTTTT

protein sequence of rna6018

>rna6018-protein ID=rna6018-protein|Name=rna6018|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMV
QYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQ
FVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQL
NCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLR
REAALSG

mRNA from alignment at CM002467.1:378534..381459-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6018 ID=rna6018|Name=rna6018|organism=Nannochloropsis gaditana|type=mRNA|length=2926bp|location=Sequence derived from alignment at CM002467.1:378534..381459- (Nannochloropsis gaditana)
ATAGAAAGGTGTCTCCCAAAATTACAGGACATATGACGGAATCCAAGCGC
AATGCTGGCTCCGGAGGAGGGGGCATTCGCATGCTTAACATTCTGGACCG
CCCACTTGCCACGAAGGGCCGCGGAGTAGGAGGCTCCGAAGTAAGCCTAA
GCGCATTCAGCTTCCTATTTTCAGAGATGGTTCAATACTACCAAAATCGT
GTCTTGAGCATTGCGGACTTGGAGCGCAAGTACGTGGGGCTAGATGTTCT
TCCTATGTTTTCTTGAGAGGTTTCAGTGTTTCAGAGGTGAAGTAAAACCA
TCTTTTCTCACAAGCTTTGTGCCAAATCGCATGCAGACTGGAGGAAGCTG
GCTATGGTGTAGGCCATCGAGTGCTCGAGCTCTTAGCTTTCCGTGAGAAG
CAATACCGACGCGAGATAAAGCTGATCGGAGTATTACAGTTTGTATCGTC
AACGGTGTGGAAAGCTCTTTTCAATAAGGTGGCCGACTCCCTCGAGCGCT
CGACTGAAAATGAGGATGAATACATGATACACGAACGAGAGCCCATAACT
AATGTGTTCGTATCGGCTCCTGCGGATATCAGTCAGCTGAATTGCGCTGC
CTACATCGCGGGCATAATATCGGGTGTTCTGAATGGCGCTTCATATGTAA
GTATGCAGATCATATGGTCTTCCAAATGTGTGCTAGCATGAGGCTTGTGA
CTGATTTGTTTGTTAATCGTCGGGGTGTGTGAGTGTGCGACTGTTCAAGC
ACGAGCCACGTCATATTCTGAGATAGCTATTTGCATGTGAATGTTGGCCT
ATGATTCAGTTGCTTGTATAGATAGTGTTTGACAACTTGTACTTAAATTA
ACTTCAGAGGAGGTTTTTCTGCATGGTCATAGTTGAGTCATAACCCAATA
AATGAGACGATTCAATTTTATAAAGATAACTGCTGATTTCTCGTCAATCA
CGTCTACTTCGAACATGTCAATTAGCCCGCCGGTGTAACAGCACATCATG
TAGCTATTGGTGATGGGCAGCGGGAGAAGACTGTGTTCCTCATCAAGTTT
CGACAAGACGTCTTGCGCAGGGAGGCTGCCTTGTCCGGGTAACGTATTGT
CGCCCGATTGATAGTTTTAAAAAAGAATGACAACGAGCTTTTGCACGATA
GCTACGCATCAAGTAGGACCCTCGTCTGTATAATTATTATATGTGCGCTT
TCTATTTCATCTTCTGTGCAAATTATGTTTTTCCCTTCCTCCAGCAAGGA
CCATTTGGCGTTCGAGCATTGAGATATGAGATATCTAAACATTGATTCTT
TTTTGAAATCCGTTCCACCCCGACGAATAAATTCCTAGAGTTTCTCATCG
GCTCCTTTTCACATTGACCAAAATAACTCGCCCGAGTCATATTTTCTGAA
GTATTACACTGCATGGTGGTGATTCTTATCATGAGAATGAGCGTAGTCTT
TTTGCGCATCTGCCTCCTCTGCATCCCAGGCGTTGTAATATCCATTCCAA
CGGTCAAACGCTGTGGACTCCCCTTTTCGGTAGTAATCGTACACATACCC
ACTTTGTTTCCCCGCATTGTGTTTATTGAACATACCACCAAAAAGGCCAC
TCTCATCCTCATAGTACTTTTCTGATTTCTCGTCTGTGCCTTTTTTGACA
CGGCGTTTAGGAGTTACTTTTACGTTCGGAGCTGCCGTTGCAGGCTGCAC
ACAAGCGTGGCAGTAACCCTCCCCATTACCATCAATTTTTACGAAGTCTG
TGGAAGCCGTACATTTGAGGTGACCGTTGTTGAAGATGTCATAGCCCAGT
GGTGCCTGATTGTCCTGAAATCGAGAACAAAGAATCCACATGGCCTCTGA
GTTAAAAATGGCACCCCCCTTGGCCGATGCCTCATTAGCATAGAAAGTGG
AGTCGCGCACCAAGAAACGGCCTCGATGATTGTTGTAAATTGCGCCACCC
AAACGTGCATGATTCCGAGAAAAGTGGCTATCATCCACGTCCGTTCGCGA
GCCGGCATTGAAGATAGCACCTCCCGAATCGGCTTGGTTGCGGGTGAACA
AAACCTGATTGAAGTGGACTCGTGAGATACGACGTCCGCCCTTCTTGTGC
TTCTTATCCTCATTTTTTCCATGCATATTTTCCTCATTAAAGGTGTCCAG
ATCATCAACACCAGAGGCCGAAGCGCTGATATCCTTCCCATGCTCGTGAT
GAATTTTCTTCTTATTTCCCTCCCAACGATCCTCCTCGATCGCAACGGCC
CCACCCTTGCGGTCGGCTGTATTGTGGTCAAAACTTACGTAATTAAACTC
TAGCCATCGGGCATTCTCGGCATAAAGCGCTCCACCGACCCAAGCGATAT
TGTTTTTGAAATGTACGTCATCAAATTTGCCCGTGGCACGATTCACGAAG
AGCATAGAACCACCGTAAAATCCCTCAACTTCACAGCCACCGTCGACGAA
GGTCAGGTCACAGGCTTTGAGAATGGCGTAGTCATCAAAGATAAAGTGGC
GTCTTTTAGGGGCAGCGTGGATAACGACTTTTTGGTTATTAGGAATACCA
TTGTTACCATTTTGGTGCTCAAGATTACTGTAGTCTGTTTTATGATGCTT
GTCATTATTGGGCACGCCACTTATCTCCAATTTAAAGCCGTCCGAGAAAA
TGAAGTCGCGATCAAGGTGGTAGTCTCCAGGTTGTACGATATATATACGA
CCGAAGAAGGTTTCGCGCTCCTTGTCCTTGTTGTGCCTATTTTTCTTGTT
CCGTCTGCTTGCAGTAGCCTCAACCTTGGTGTGCTTGCTCTCTTGTCCCT
CGTCAACCCACCACCGATTCTCTTCGCTGCGATACCAGGTTTGGCTCTCG
TGCTCTAAAATAGCAAGAGCTCGATTGAGTTCTTTGGAATCTCGCACGTA
AAAAGGACTGTGGCGGGTCTCAATGA

Coding sequence (CDS) from alignment at CM002467.1:378534..381459-

>rna6018 ID=rna6018|Name=rna6018|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002467.1:378534..381459- (Nannochloropsis gaditana)
CCCGCCGGTGTAACAGCACATCATGTAGCTATTGGTGATGGGCAGCGGGA
GAAGACTGTGTTCCTCATCAAGTTTCGACAAGACGTCTTGCGCAGGGAGG
CTGCCTTGTCCGGGTAAACTGGAGGAAGCTGGCTATGGTGTAGGCCATCG
AGTGCTCGAGCTCTTAGCTTTCCGTGAGAAGCAATACCGACGCGAGATAA
AGCTGATCGGAGTATTACAGTTTGTATCGTCAACGGTGTGGAAAGCTCTT
TTCAATAAGGTGGCCGACTCCCTCGAGCGCTCGACTGAAAATGAGGATGA
ATACATGATACACGAACGAGAGCCCATAACTAATGTGTTCGTATCGGCTC
CTGCGGATATCAGTCAGCTGAATTGCGCTGCCTACATCGCGGGCATAATA
TCGGGTGTTCTGAATGGCGCTTCATATATGACGGAATCCAAGCGCAATGC
TGGCTCCGGAGGAGGGGGCATTCGCATGCTTAACATTCTGGACCGCCCAC
TTGCCACGAAGGGCCGCGGAGTAGGAGGCTCCGAAGTAAGCCTAAGCGCA
TTCAGCTTCCTATTTTCAGAGATGGTTCAATACTACCAAAATCGTGTCTT
GAGCATTGCGGACTTGGAGCGCAACCCGCCGGTGTAACAGCACATCATGT
AGCTATTGGTGATGGGCAGCGGGAGAAGACTGTGTTCCTCATCAAGTTTC
GACAAGACGTCTTGCGCAGGGAGGCTGCCTTGTCCGGGTAAACTGGAGGA
AGCTGGCTATGGTGTAGGCCATCGAGTGCTCGAGCTCTTAGCTTTCCGTG
AGAAGCAATACCGACGCGAGATAAAGCTGATCGGAGTATTACAGTTTGTA
TCGTCAACGGTGTGGAAAGCTCTTTTCAATAAGGTGGCCGACTCCCTCGA
GCGCTCGACTGAAAATGAGGATGAATACATGATACACGAACGAGAGCCCA
TAACTAATGTGTTCGTATCGGCTCCTGCGGATATCAGTCAGCTGAATTGC
GCTGCCTACATCGCGGGCATAATATCGGGTGTTCTGAATGGCGCTTCATA
TATGACGGAATCCAAGCGCAATGCTGGCTCCGGAGGAGGGGGCATTCGCA
TGCTTAACATTCTGGACCGCCCACTTGCCACGAAGGGCCGCGGAGTAGGA
GGCTCCGAAGTAAGCCTAAGCGCATTCAGCTTCCTATTTTCAGAGATGGT
TCAATACTACCAAAATCGTGTCTTGAGCATTGCGGACTTGGAGCGCAACC
CGCCGGTGTAACAGCACATCATGTAGCTATTGGTGATGGGCAGCGGGAGA
AGACTGTGTTCCTCATCAAGTTTCGACAAGACGTCTTGCGCAGGGAGGCT
GCCTTGTCCGGGTAAACTGGAGGAAGCTGGCTATGGTGTAGGCCATCGAG
TGCTCGAGCTCTTAGCTTTCCGTGAGAAGCAATACCGACGCGAGATAAAG
CTGATCGGAGTATTACAGTTTGTATCGTCAACGGTGTGGAAAGCTCTTTT
CAATAAGGTGGCCGACTCCCTCGAGCGCTCGACTGAAAATGAGGATGAAT
ACATGATACACGAACGAGAGCCCATAACTAATGTGTTCGTATCGGCTCCT
GCGGATATCAGTCAGCTGAATTGCGCTGCCTACATCGCGGGCATAATATC
GGGTGTTCTGAATGGCGCTTCATATATGACGGAATCCAAGCGCAATGCTG
GCTCCGGAGGAGGGGGCATTCGCATGCTTAACATTCTGGACCGCCCACTT
GCCACGAAGGGCCGCGGAGTAGGAGGCTCCGAAGTAAGCCTAAGCGCATT
CAGCTTCCTATTTTCAGAGATGGTTCAATACTACCAAAATCGTGTCTTGA
GCATTGCGGACTTGGAGCGCAA

Synonyms

Publications