EWM24637.1, cds6003 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|585106159|gb|EWM24637.1| (Transport protein particle (TRAPP) component [Nannochloropsis gaditana]) HSP 1 Score: 422.165 bits (1084), Expect = 1.631e-149 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query: 1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG 207
MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG
Sbjct: 1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG 207
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|298708583|emb|CBJ30667.1| (Transport protein particle component (TRAPP)/ SPP30-like [Ectocarpus siliculosus]) HSP 1 Score: 274.248 bits (700), Expect = 4.347e-91 Identity = 132/187 (70.59%), Postives = 157/187 (83.96%), Query Frame = 0
Query: 19 NILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAAL 205
+ILDR + G+G +EVSLSAFSFLFSEMVQY+Q+RV SIADLERKLEEAGYG+G RVLEL FRE+ +R ++L+ +LQ+VSS VWKALF K ADSLERSTENEDEYMIHEREP+TN FVS PAD+ QLNCAA +AG+I+GVL+GAS+PA V+AH+V + GQREKTVFLIKF +VL REA L
Sbjct: 13 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQREKTVFLIKFDPEVLAREARL 199
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|1214684078|gb|OWZ01682.1| (Trafficking protein particle complex subunit [Phytophthora megakarya]) HSP 1 Score: 249.21 bits (635), Expect = 3.731e-81 Identity = 121/189 (64.02%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQFV ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 16 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDNAGFGVGVRVVELLCHREKSGRRETRLLAMLQFVVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFTAEVTAHSVEVPGGQRDKTVFLVKFDESVIRREHVLT 199
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|301099841|ref|XP_002899011.1| (trafficking protein particle complex subunit, putative [Phytophthora infestans T30-4] >gi|262104323|gb|EEY62375.1| trafficking protein particle complex subunit, putative [Phytophthora infestans T30-4]) HSP 1 Score: 248.825 bits (634), Expect = 5.412e-81 Identity = 127/206 (61.65%), Postives = 154/206 (74.76%), Query Frame = 0
Query: 1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
M ES R S G L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGII G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 1 MMESGRR--STGVAATNLHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIIRGILCSSGFLADVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|953488766|emb|CEG47632.1| (trafficking protein particle complex subunit 5-like [Plasmopara halstedii]) HSP 1 Score: 247.669 bits (631), Expect = 1.371e-80 Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG R++ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + VLRRE L+
Sbjct: 15 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRIVELLCHREKSGRRETRLLSMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFVAAVTAHTVEVPGGQRDKTVFLVKFDESVLRRERILT 198
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|566032982|gb|ETI55893.1| (hypothetical protein F443_01484 [Phytophthora parasitica P1569] >gi|570960691|gb|ETP25670.1| hypothetical protein F441_01472 [Phytophthora parasitica CJ01A1] >gi|570997258|gb|ETP53684.1| hypothetical protein F442_01436 [Phytophthora parasitica P10297] >gi|970659231|gb|KUF96890.1| hypothetical protein AM588_10006345 [Phytophthora nicotianae]) HSP 1 Score: 246.514 bits (628), Expect = 4.421e-80 Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 16 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|970630842|gb|KUF77657.1| (Trafficking protein particle complex subunit 5 [Phytophthora nicotianae]) HSP 1 Score: 246.128 bits (627), Expect = 5.439e-80 Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 15 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 198
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|695435411|ref|XP_009531695.1| (hypothetical protein PHYSODRAFT_303479 [Phytophthora sojae] >gi|348674447|gb|EGZ14266.1| hypothetical protein PHYSODRAFT_303479 [Phytophthora sojae]) HSP 1 Score: 246.128 bits (627), Expect = 6.005e-80 Identity = 125/206 (60.68%), Postives = 156/206 (75.73%), Query Frame = 0
Query: 1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
M E+ R S G L++LDRPL ++G+G EVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 1 MMEAGRR--STGMSATNLHVLDRPL-SRGKG----EVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLAMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|675180097|ref|XP_008898933.1| (hypothetical protein PPTG_06641 [Phytophthora parasitica INRA-310] >gi|567970653|gb|ETK95678.1| hypothetical protein L915_01416 [Phytophthora parasitica] >gi|568058752|gb|ETM55360.1| hypothetical protein L914_01402 [Phytophthora parasitica] >gi|568100676|gb|ETN15366.1| hypothetical protein PPTG_06641 [Phytophthora parasitica INRA-310] >gi|570336668|gb|ETO84616.1| hypothetical protein F444_01490 [Phytophthora parasitica P1976]) HSP 1 Score: 246.514 bits (628), Expect = 7.276e-80 Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 28 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 211
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|567999009|gb|ETL49062.1| (hypothetical protein L916_01391 [Phytophthora parasitica]) HSP 1 Score: 246.128 bits (627), Expect = 8.747e-80 Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
L++LDRPL+ G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL REK RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L + + A VTAH V + GQR+KTVFL+KF + V+RRE L+
Sbjct: 24 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 207 The following BLAST results are available for this feature:
BLAST of EWM24637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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