EWM24637.1, cds6003 (CDS) Nannochloropsis gaditana

Overview
NameEWM24637.1
Unique Namecds6003
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:381231..381427 -
Alignment locationCM002467.1:380814..381123 -
Alignment locationCM002467.1:380368..380484 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24637.1
ProductTransport protein particle (TRAPP) component
Orig transcript idgnl|cribi|Naga_100055g36.7321.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:381231..381427 -
CM002467.1supercontigCM002467.1:380814..381123 -
CM002467.1supercontigCM002467.1:380368..380484 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR007194TRAPP_component
IPR016696TRAPP-I_su5
Homology
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|585106159|gb|EWM24637.1| (Transport protein particle (TRAPP) component [Nannochloropsis gaditana])

HSP 1 Score: 422.165 bits (1084), Expect = 1.631e-149
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG 207
            MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG
Sbjct:    1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALSG 207          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|298708583|emb|CBJ30667.1| (Transport protein particle component (TRAPP)/ SPP30-like [Ectocarpus siliculosus])

HSP 1 Score: 274.248 bits (700), Expect = 4.347e-91
Identity = 132/187 (70.59%), Postives = 157/187 (83.96%), Query Frame = 0
Query:   19 NILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAAL 205
            +ILDR +   G+G   +EVSLSAFSFLFSEMVQY+Q+RV SIADLERKLEEAGYG+G RVLEL  FRE+  +R ++L+ +LQ+VSS VWKALF K ADSLERSTENEDEYMIHEREP+TN FVS PAD+ QLNCAA +AG+I+GVL+GAS+PA V+AH+V +  GQREKTVFLIKF  +VL REA L
Sbjct:   13 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQREKTVFLIKFDPEVLAREARL 199          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|1214684078|gb|OWZ01682.1| (Trafficking protein particle complex subunit [Phytophthora megakarya])

HSP 1 Score: 249.21 bits (635), Expect = 3.731e-81
Identity = 121/189 (64.02%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQFV ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:   16 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDNAGFGVGVRVVELLCHREKSGRRETRLLAMLQFVVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFTAEVTAHSVEVPGGQRDKTVFLVKFDESVIRREHVLT 199          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|301099841|ref|XP_002899011.1| (trafficking protein particle complex subunit, putative [Phytophthora infestans T30-4] >gi|262104323|gb|EEY62375.1| trafficking protein particle complex subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 248.825 bits (634), Expect = 5.412e-81
Identity = 127/206 (61.65%), Postives = 154/206 (74.76%), Query Frame = 0
Query:    1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            M ES R   S G     L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGII G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:    1 MMESGRR--STGVAATNLHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIIRGILCSSGFLADVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|953488766|emb|CEG47632.1| (trafficking protein particle complex subunit 5-like [Plasmopara halstedii])

HSP 1 Score: 247.669 bits (631), Expect = 1.371e-80
Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG R++ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + VLRRE  L+
Sbjct:   15 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRIVELLCHREKSGRRETRLLSMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFVAAVTAHTVEVPGGQRDKTVFLVKFDESVLRRERILT 198          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|566032982|gb|ETI55893.1| (hypothetical protein F443_01484 [Phytophthora parasitica P1569] >gi|570960691|gb|ETP25670.1| hypothetical protein F441_01472 [Phytophthora parasitica CJ01A1] >gi|570997258|gb|ETP53684.1| hypothetical protein F442_01436 [Phytophthora parasitica P10297] >gi|970659231|gb|KUF96890.1| hypothetical protein AM588_10006345 [Phytophthora nicotianae])

HSP 1 Score: 246.514 bits (628), Expect = 4.421e-80
Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:   16 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|970630842|gb|KUF77657.1| (Trafficking protein particle complex subunit 5 [Phytophthora nicotianae])

HSP 1 Score: 246.128 bits (627), Expect = 5.439e-80
Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:   15 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 198          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|695435411|ref|XP_009531695.1| (hypothetical protein PHYSODRAFT_303479 [Phytophthora sojae] >gi|348674447|gb|EGZ14266.1| hypothetical protein PHYSODRAFT_303479 [Phytophthora sojae])

HSP 1 Score: 246.128 bits (627), Expect = 6.005e-80
Identity = 125/206 (60.68%), Postives = 156/206 (75.73%), Query Frame = 0
Query:    1 MTESKRNAGSGGGGIRMLNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            M E+ R   S G     L++LDRPL ++G+G    EVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:    1 MMEAGRR--STGMSATNLHVLDRPL-SRGKG----EVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLAMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 199          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|675180097|ref|XP_008898933.1| (hypothetical protein PPTG_06641 [Phytophthora parasitica INRA-310] >gi|567970653|gb|ETK95678.1| hypothetical protein L915_01416 [Phytophthora parasitica] >gi|568058752|gb|ETM55360.1| hypothetical protein L914_01402 [Phytophthora parasitica] >gi|568100676|gb|ETN15366.1| hypothetical protein PPTG_06641 [Phytophthora parasitica INRA-310] >gi|570336668|gb|ETO84616.1| hypothetical protein F444_01490 [Phytophthora parasitica P1976])

HSP 1 Score: 246.514 bits (628), Expect = 7.276e-80
Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:   28 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 211          
BLAST of EWM24637.1 vs. NCBI_GenBank
Match: gi|567999009|gb|ETL49062.1| (hypothetical protein L916_01391 [Phytophthora parasitica])

HSP 1 Score: 246.128 bits (627), Expect = 8.747e-80
Identity = 120/189 (63.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query:   18 LNILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
            L++LDRPL+      G SEVSLSAFSFLFSEMVQY+Q RV +I+DLE +L+ AG+GVG RV+ELL  REK  RRE +L+ +LQF+ ST WKALF K AD+LERSTENEDEYMIHE EP+TN FVS P D+ QL+CAAYIAGI+ G+L  + + A VTAH V +  GQR+KTVFL+KF + V+RRE  L+
Sbjct:   24 LHVLDRPLSR-----GKSEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLNMLQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVLT 207          
The following BLAST results are available for this feature:
BLAST of EWM24637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106159|gb|EWM24637.1|1.631e-149100.00Transport protein particle (TRAPP) component [Nann... [more]
gi|298708583|emb|CBJ30667.1|4.347e-9170.59Transport protein particle component (TRAPP)/ SPP3... [more]
gi|1214684078|gb|OWZ01682.1|3.731e-8164.02Trafficking protein particle complex subunit [Phyt... [more]
gi|301099841|ref|XP_002899011.1|5.412e-8161.65trafficking protein particle complex subunit, puta... [more]
gi|953488766|emb|CEG47632.1|1.371e-8063.49trafficking protein particle complex subunit 5-lik... [more]
gi|566032982|gb|ETI55893.1|4.421e-8063.49hypothetical protein F443_01484 [Phytophthora para... [more]
gi|970630842|gb|KUF77657.1|5.439e-8063.49Trafficking protein particle complex subunit 5 [Ph... [more]
gi|695435411|ref|XP_009531695.1|6.005e-8060.68hypothetical protein PHYSODRAFT_303479 [Phytophtho... [more]
gi|675180097|ref|XP_008898933.1|7.276e-8063.49hypothetical protein PPTG_06641 [Phytophthora para... [more]
gi|567999009|gb|ETL49062.1|8.747e-8063.49hypothetical protein L916_01391 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6018rna6018Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications