rna6017, rna6017 (mRNA) Nannochloropsis gaditana

Overview
Namerna6017
Unique Namerna6017
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length899
Alignment locationCM002467.1:374573..375865 -

Link to JBrowse

Properties
Property NameValue
ProductPlastid lipid-associated protein/fibrillin conserved domain protein
Orig transcript idgnl|cribi|Naga_100055g38.7354.mrna
Orig protein idgnl|cribi|Naga_100055g38.7354
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:374573..375865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g38gene5813Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24670.1cds6002Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6017rna6017-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6017 ID=rna6017|Name=rna6017|organism=Nannochloropsis gaditana|type=mRNA|length=899bp
ATGGAGGCCGCGGAGGCGCTTTTGGCGAGTGTCCGGGGCCCGGGGCCGCC
GCCGACAGCTAAGGCCGAGCCGGAAGATGACTTTGGTGGGGAGGAGCAGT
CGCTGAGGAGCGCGTCTCAGGACGAGGGGGACGGCGGGGCGGGCACAGAG
GGGGGCTCCATGCGAGGGGCCAGGGCGCGGGGGGGACTCTCCTCCAGGCC
CCTTCTGGACAACGGCGTGCCGGGCGCGAGGGCAAGAAAAGGGTCGGCAG
CTGGCGCCCGCGGGGAGGGAGGTGCGCCCCTAGGAGGGGGTCGGAAGCGG
ACGTTGGGCCGCGCGGGGGCGGGAGAGGGGGAGAGCGATGAGGGTTCGTC
GCTAACCCCTGAGCTTTGTGCTCAAGGAAGTAAGCGGGCCGCCGAGGGCG
TGTCCTCGGTGCCTGCTGCGGCGGCGGAGGAGGGCAGTGGGGCCTCGGCT
CAGGACGGAGAGAACAGGCACAAGGGTGGCGCGGGGAAGGCTAAGAGAAG
AAAGCGCTAGGATGGAGGGGGTAGGGAAAAGGAGGGGCGTGGGAAGGACG
GGCTTTGGGCTCGAGGGGCCTCGAGGGCCATCAGGGACATGAGGGAGGGG
GTTCTTCTGACCTTGGATAGCGGTGGTTTAGACAGGAGAGGAACTAGACC
AGTCATATAAAAAGTTAGCGATGCGACTCTCATGCGAGAGGGAGATAAGT
GTTGCCACAGGCGACGCATACACTTTTCTGTGTGGAGACAAAGCATTAGT
AAATTCAGACGAGCGAATTGTAAGTTTTGCGGAGGCTGCGGGCAAGGTGT
CTTCTCTGGTGAGGGTGGGCGAGGGGTGGTACGAGACGAGCGTTGATGCT
TCACGAACGAAAAGCGAGGAAAGGAAGAGCTCACTGACGGCATGGGATA
back to top

protein sequence of rna6017

>rna6017-protein ID=rna6017-protein|Name=rna6017|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVD
SRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIG
NGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEA
LNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGE
TVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASM
GNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSN
TGVPSATDDDTSPGAG
back to top

mRNA from alignment at CM002467.1:374573..375865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6017 ID=rna6017|Name=rna6017|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp|location=Sequence derived from alignment at CM002467.1:374573..375865- (Nannochloropsis gaditana)
ATGTTCCACTCAATCTCACAGACCCATCATAACCGTGTATAAAGATAGGT
GATTACACCCGTGTCACTTAACCAACAGTCGCCCGCTGGGTAGCTTCAAC
TATTCGCGTGGGGAACGTAATATGGAAGCTAGATGTTTCGGGCTTTGGCT
TCTCGTTGCCTGCTGCTTTATACCTGTCCAAAGTTTCATGCCACGGCCTA
GCAAGCAAGTCAACTGCTGCCCTCATACAGCTCAAAATATGAAGGATGTT
GGCTGTAGCAGCTGGGTGGACAGTCGAGTTGGAACGTCGTCGTCCAACGG
TCGCTGCAGCCGCGGCTCCACCTCCCTGTCCTCCACAATATCCACGGCCG
ACGGGACGTCGGACGTTGAGTCGACCGCGGTAAGCAAGAGGACTGGCATC
AAGGAATCTGATATGATAGGAAATGGTGTAAATGTCGGTGCTGCTGCCAT
GGAAGACGTCGGTCGTGGCGCCAAAGATGAGCTGATAAGCCTTGTTTCGG
AAGGCATGCTGGATTTTTCCTCTCCCATGAAACGAGCATCTGTCAACGAG
CTTTTGTTGCGACTCGAGGCTTTAAATCCTACACCCATGCCTGCTTATTC
ATCCCTTTTGAATGGGGCTTGGGAATTTCTGTGGACTGGTGGAATCTCTC
CCGGCATCCTGGGATTGCAATTGGCGTCGCGACTCTCAACCTACGCCAGC
GGAGCAGTGGAGGTTGGAGAGACAGTCCTCACAATAAGCCGTGCTCAACC
TCGTGTCGAGGTCCAGACCTCCCTCAAAGTTTTTGGAAGGGAAAATCGAA
TAAATATCCGCACTCGACTAGAGCCGGCCTCGGGATTGCGATTGGAGGAG
ACCTACACGGAGGCAAGCATGGGCAATCTTCGCGTCCCATTTCCTGATCA
AGAACAGATCTTCAAGCGGCCACTGTTTGTTTCCTACCTTGATGACGATT
TGCTCGTCGTTCGGGACAGTTTCGGAGCCCCCGATATTCTAATTCGCAAA
GACAAAGCATTTCTGAGCAATACCGGAGTTCCTTCCGCAACGGACGATGA
CACAAGTCCTGGCGCTGGCTAATTTAAAAGCAATGAAATGTGAATAGGAA
CTATGGAAATTCAAAAAGTCAGAGGGAAGAAGAAGAGTCCTCCTGAGAAA
TTCTGATGAGGGGGTAAGGATGGAAGAGGATCAGATCGGTATTTTTTTAA
AGGGGATTGGAAAAGTTCTGGAAGAAATGCACAGTACGAAGTATTATTTG
ACACTTGTATCAAAGAAAGGATGACAACGCACTTCTTACTTTT
back to top

Coding sequence (CDS) from alignment at CM002467.1:374573..375865-

>rna6017 ID=rna6017|Name=rna6017|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002467.1:374573..375865- (Nannochloropsis gaditana)
ATGGAAGCTAGATGTTTCGGGCTTTGGCTTCTCGTTGCCTGCTGCTTTAT
ACCTGTCCAAAGTTTCATGCCACGGCCTAGCAAGCAAGTCAACTGCTGCC
CTCATACAGCTCAAAATATGAAGGATGTTGGCTGTAGCAGCTGGGTGGAC
AGTCGAGTTGGAACGTCGTCGTCCAACGGTCGCTGCAGCCGCGGCTCCAC
CTCCCTGTCCTCCACAATATCCACGGCCGACGGGACGTCGGACGTTGAGT
CGACCGCGGTAAGCAAGAGGACTGGCATCAAGGAATCTGATATGATAGGA
AATGGTGTAAATGTCGGTGCTGCTGCCATGGAAGACGTCGGTCGTGGCGC
CAAAGATGAGCTGATAAGCCTTGTTTCGGAAGGCATGCTGGATTTTTCCT
CTCCCATGAAACGAGCATCTGTCAACGAGCTTTTGTTGCGACTCGAGGCT
TTAAATCCTACACCCATGCCTGCTTATTCATCCCTTTTGAATGGGGCTTG
GGAATTTCTGTGGACTGGTGGAATCTCTCCCGGCATCCTGGGATTGCAAT
TGGCGTCGCGACTCTCAACCTACGCCAGCGGAGCAGTGGAGGTTGGAGAG
ACAGTCCTCACAATAAGCCGTGCTCAACCTCGTGTCGAGGTCCAGACCTC
CCTCAAAGTTTTTGGAAGGGAAAATCGAATAAATATCCGCACTCGACTAG
AGCCGGCCTCGGGATTGCGATTGGAGGAGACCTACACGGAGGCAAGCATG
GGCAATCTTCGCGTCCCATTTCCTGATCAAGAACAGATCTTCAAGCGGCC
ACTGTTTGTTTCCTACCTTGATGACGATTTGCTCGTCGTTCGGGACAGTT
TCGGAGCCCCCGATATTCTAATTCGCAAAGACAAAGCATTTCTGAGCAAT
ACCGGAGTTCCTTCCGCAACGGACGATGACACAAGTCCTGGCGCTGGCTA
A
back to top
Synonyms
Publications