EWM24670.1, cds6002 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|585106192|gb|EWM24670.1| (Plastid lipid-associated protein/fibrillin conserved domain protein [Nannochloropsis gaditana]) HSP 1 Score: 644.04 bits (1660), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 Query: 1 MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG 316 MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG Sbjct: 1 MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG 316
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|299117370|emb|CBN75326.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 177.563 bits (449), Expect = 7.018e-51 Identity = 92/212 (43.40%), Postives = 128/212 (60.38%), Query Frame = 0 Query: 133 SSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKA---------------------------FLSNTGVPSAT-DDDTSPGAG 316 SS R VNEL+L+LE +NPT PA S++LNG WEFL+TGG+SPG L +Q+ SR++ S V++ LTI+R QPRVE VFG E ++ +RTRLE S +RL+E Y EA + + +P P + Q +R L+++YLDDD+++ RD GAPD+L+RK K F NTG PS + +DD+SPG+G Sbjct: 31 SSKQMRTEVNELMLKLEPMNPTDKPAASAILNGVWEFLYTGGLSPGTLAVQVLSRVAKTFSAVVDLKGITLTINRDQPRVEAAVKASVFGTEAQVKVRTRLEQKSDMRLQEVYEEAEVAGVTIPIPARIQP-RRTLYITYLDDDIMIARDDTGAPDLLVRKQKYDVRISWRWPRSAAAATLGVLKGEAEQDFRFNTGTPSTSEEDDSSPGSG 241
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|397643599|gb|EJK75970.1| (hypothetical protein THAOC_02292 [Thalassiosira oceanica]) HSP 1 Score: 150.984 bits (380), Expect = 2.944e-40 Identity = 82/178 (46.07%), Postives = 109/178 (61.24%), Query Frame = 0 Query: 138 RASVNELLLRLEALNPTPMPAYSSLLNGAWE---------------------FLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRK 293 RA++NE +LRLEALNPT PAYS L+NG W FL++GG SPG+ L LA L S VE+G+ ++ISRAQPR+E + +K+F G E + ++ RLE SGLR ETY AS+ + P+Q Q + R L+VSY+DDD+LVVRD G P+IL+RK Sbjct: 97 RAAINEAVLRLEALNPTEDPAYSPLINGVWALKYAGGYSDSKIPSPTRQLALFLYSGGYSPGLFALSLAQNL---PSQLVELGDLEISISRAQPRIEAKIDVKLFGGSEEAVEVKARLEEESGLRFTETYESASVLGQTIDIPEQLQ-YSRELYVSYVDDDILVVRDGAGVPEILVRK 270
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1210526526|dbj|GAX14707.1| (hypothetical protein FisN_11Hh248 [Fistulifera solaris]) HSP 1 Score: 147.902 bits (372), Expect = 7.409e-39 Identity = 89/220 (40.45%), Postives = 128/220 (58.18%), Query Frame = 0 Query: 119 DELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEV-GETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPG 314 +++I+L+ + S RA++NE LLRLE+LNPTP PA S L+NG WE FL++GG SPGI L LA +L + VE+ G + ISR+QPRVE +K+ G +++ + LE SG+RL ETY +A + + V P Q Q ++R LFV+++DDDLLVVRD G P++L+RK+KAF + V + +D PG Sbjct: 68 NKVINLLPSTLTGTVSTETRAAINEALLRLESLNPTPDPAVSPLINGIWELKYVGGYAPEWALPSPTRDLALFLYSGGYSPGIFALTLAQKLP---AALVEMSGNLEIAISRSQPRVEASIDVKLLGGAASKVRVSAALEAQSGVRLRETYEKAYVLDREVAIPAQLQ-YQRQLFVTFVDDDLLVVRDGSGVPEVLVRKNKAFRGFSAVTESEEDLAPPG 283
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1210531423|dbj|GAX09779.1| (hypothetical protein FisN_11Lh248 [Fistulifera solaris]) HSP 1 Score: 146.362 bits (368), Expect = 2.371e-38 Identity = 89/220 (40.45%), Postives = 127/220 (57.73%), Query Frame = 0 Query: 119 DELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEV-GETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPG 314 +++I+L+ + S RA++NE LLRLE LNPTP PA S L+NG WE FL++GG SPGI L LA +L + VE+ G + ISR+QPRVE +K+ G +++ + LE SG+RL ETY +A + + V P Q Q ++R LFV+++DDDLLVVRD G P++L+RK+KAF + V + +D PG Sbjct: 67 NKVINLLPSTLSGTVSTETRAAINEALLRLETLNPTPDPAVSPLINGIWELKYVGGYAPEWALPSPTRDLALFLYSGGYSPGIFALTLAQKLP---AALVEMTGNLEIAISRSQPRVEASIDVKLLGGAASKVRVSAALEAESGVRLRETYEKAYVLDREVAIPAQLQ-YQRQLFVTFVDDDLLVVRDGSGVPEVLVRKNKAFRGFSAVTESEEDLAPPG 282
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1072232418|gb|OEU17149.1| (hypothetical protein FRACYDRAFT_184583 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 144.05 bits (362), Expect = 1.388e-37 Identity = 87/202 (43.07%), Postives = 120/202 (59.41%), Query Frame = 0 Query: 138 RASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVE-VGETVLTISRAQPRVEVQTSLK-VFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGV-PSATDDDTSPG 314 RA +NE+LL+LEALNPT PA S LLNG WE FL++GG SPG+ LQLA +L S V+ VG +TISRA PRVE +K + G E+ + +++ LE S +RL ETY A++ V P Q + R ++V+Y+D+DLLV+RD G P++LIRK+K+F N G P++ DD +PG Sbjct: 57 RAEINEVLLKLEALNPTTEPAQSPLLNGIWELRYAGGYTSTGSLLSPTRQLALFLYSGGYSPGLFALQLAKQL---PSNLVDIVGSLDITISRAAPRVESSVKVKTLLGGESSVKVKSNLEVLSEIRLRETYESATVLEKVVDLPKFLQ-YTRDIYVTYVDEDLLVIRDGSGVPELLIRKEKSFTRNWGTEPTSVDDKLAPG 254
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|219118506|ref|XP_002180024.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408281|gb|EEC48215.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 142.895 bits (359), Expect = 1.233e-36 Identity = 101/270 (37.41%), Postives = 138/270 (51.11%), Query Frame = 0 Query: 66 STSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGR-ENRINIRTRLEPASGLRLEETYTEASM-GNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGV-PSATDDD 310 ST +S I +DG SDV T S T M+ N +++ + GA D S R+++NE L +LEALNPT P S LLNG WE FL++GG SPG L LA +L S V+VG+ + ISR QPRVE +K+ G E++I ++ RLE S LR+ ETY A + GN + P Q + R L+V+Y+D+DLL+VRD+ G P++L+RK+K F GV P D D Sbjct: 57 STDDTSFIYASDGDSDVVDTESSNYTPTAGEAMVSNIMDMMPRQL-----GA-------------DNVSDEARSAINEALYKLEALNPTTSPTVSPLLNGVWELRYVGGYSSDWALPSPTRQLALFLYSGGYSPGTFALALAQKL---PSSVVDVGDLEIAISRQQPRVEATVPVKILGGGESKIVVQARLETKSDLRMRETYESAQLVGNNVIELPQPLQ-YARDLYVTYVDEDLLIVRDASGVPEVLVRKEKTFSKVWGVEPGQADLD 304
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|922857252|gb|KOO25518.1| (hypothetical protein Ctob_005700 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 137.502 bits (345), Expect = 8.472e-35 Identity = 89/222 (40.09%), Postives = 127/222 (57.21%), Query Frame = 0 Query: 78 GTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYA----SGA--VEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQI-FKRPLFVSYLDDDLLVVRDSFGAPDILIR 292 +D S V E ++G G + A E+ G AK+ L S +++G L + P RA V E+LL LEA NPT PA S LLNG W+FL+ G SPG+ L L + + A SGA V+VG+T LTI QPR + ++V EN + + ++LE S +RL E YTEA + + P Q + +KR + +SYLDD+++VVRD+ G PD+L+R Sbjct: 51 AAADASSMDVKAEPAAVEQALVG-GDDYDDALFEE-GSIAKEALKSEIADG-LKGAKP-DRAVVGEILLALEAQNPTQSPATSPLLNGKWKFLYASGASPGLKALTLLMKGAKSAPKSPSGADLVDVGDTYLTIRPEQPRATAEVKVRVLSFENTVKLASKLEAESAVRLVEMYTEAQSEYMSLKLPFQAPVEYKRSVLISYLDDEMMVVRDAAGRPDVLMR 268
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|224004214|ref|XP_002295758.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585790|gb|ACI64475.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 141.354 bits (355), Expect = 1.729e-34 Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 0 Query: 138 RASVNELLLRLEALNPTPMPAYSSLLNGAW---------------------EFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRK 293 RAS+NE +L+LEALNPT P YS LLNG W FL++GG SPG+ L LA +L S VE+G+ ++ISRAQPR+E + +K+F G ++ + ++ RL+ SGLR ETY AS+ V P+ Q + R L+VSY+D+D+LVVRD G P+IL+RK Sbjct: 108 RASINEAILKLEALNPTEDPVYSPLLNGVWILRYAGGYSDPKIPSPTRDLALFLYSGGYSPGLFALSLAQKL---PSQLVELGDLEISISRAQPRIEAKIDVKLFGGSQDEVVVKARLDEDSGLRFTETYESASVLGQVVDIPEALQ-YSRDLYVSYVDEDILVVRDGSGVPEILVRK 281
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|551550872|ref|XP_005762930.1| (hypothetical protein EMIHUDRAFT_452690 [Emiliania huxleyi CCMP1516] >gi|485612111|gb|EOD10501.1| hypothetical protein EMIHUDRAFT_452690 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 128.257 bits (321), Expect = 1.724e-31 Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 0 Query: 112 DVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQL---ASRLSTYA-SGA--VEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETY--TEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTG----VPSATDDDTSPGA 315 D G AK+ L + V++G ++ +A + E+LL LE+ NPT PA S LLNG W+ L+ G +P + L L SRL+ + SGA +V + LTI QPR E ++ EN I + +RLE S +RL ETY E+ +L++PF Q +KR + VSYLDD+LLVVRDS G PDIL+R D+A S + V ++D +PGA Sbjct: 57 DEGSIAKEALKAEVADGF--TAAAPDKAVLGEILLALESANPTRSPATSPLLNGKWKVLYASGATPSLKALMLLLKGSRLAPKSPSGAELADVQDAYLTIREEQPRAEGSLRTRLLSFENTIKLSSRLEAESAVRLVETYEAAESEYMSLKLPFQRPVQ-YKRSVLVSYLDDELLVVRDSQGRPDILLRVDEASRSPSSLGGEVSDDDENDAAPGA 269 The following BLAST results are available for this feature:
BLAST of EWM24670.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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