EWM24670.1, cds6002 (CDS) Nannochloropsis gaditana

Overview
NameEWM24670.1
Unique Namecds6002
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:374794..375744 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24670.1
ProductPlastid lipid-associated protein/fibrillin conserved domain protein
Orig transcript idgnl|cribi|Naga_100055g38.7354.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:374794..375744 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|585106192|gb|EWM24670.1| (Plastid lipid-associated protein/fibrillin conserved domain protein [Nannochloropsis gaditana])

HSP 1 Score: 644.04 bits (1660), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG 316
            MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG
Sbjct:    1 MEARCFGLWLLVACCFIPVQSFMPRPSKQVNCCPHTAQNMKDVGCSSWVDSRVGTSSSNGRCSRGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG 316          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|299117370|emb|CBN75326.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.563 bits (449), Expect = 7.018e-51
Identity = 92/212 (43.40%), Postives = 128/212 (60.38%), Query Frame = 0
Query:  133 SSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKA---------------------------FLSNTGVPSAT-DDDTSPGAG 316
            SS   R  VNEL+L+LE +NPT  PA S++LNG WEFL+TGG+SPG L +Q+ SR++   S  V++    LTI+R QPRVE      VFG E ++ +RTRLE  S +RL+E Y EA +  + +P P + Q  +R L+++YLDDD+++ RD  GAPD+L+RK K                            F  NTG PS + +DD+SPG+G
Sbjct:   31 SSKQMRTEVNELMLKLEPMNPTDKPAASAILNGVWEFLYTGGLSPGTLAVQVLSRVAKTFSAVVDLKGITLTINRDQPRVEAAVKASVFGTEAQVKVRTRLEQKSDMRLQEVYEEAEVAGVTIPIPARIQP-RRTLYITYLDDDIMIARDDTGAPDLLVRKQKYDVRISWRWPRSAAAATLGVLKGEAEQDFRFNTGTPSTSEEDDSSPGSG 241          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|397643599|gb|EJK75970.1| (hypothetical protein THAOC_02292 [Thalassiosira oceanica])

HSP 1 Score: 150.984 bits (380), Expect = 2.944e-40
Identity = 82/178 (46.07%), Postives = 109/178 (61.24%), Query Frame = 0
Query:  138 RASVNELLLRLEALNPTPMPAYSSLLNGAWE---------------------FLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRK 293
            RA++NE +LRLEALNPT  PAYS L+NG W                      FL++GG SPG+  L LA  L    S  VE+G+  ++ISRAQPR+E +  +K+F G E  + ++ RLE  SGLR  ETY  AS+    +  P+Q Q + R L+VSY+DDD+LVVRD  G P+IL+RK
Sbjct:   97 RAAINEAVLRLEALNPTEDPAYSPLINGVWALKYAGGYSDSKIPSPTRQLALFLYSGGYSPGLFALSLAQNL---PSQLVELGDLEISISRAQPRIEAKIDVKLFGGSEEAVEVKARLEEESGLRFTETYESASVLGQTIDIPEQLQ-YSRELYVSYVDDDILVVRDGAGVPEILVRK 270          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1210526526|dbj|GAX14707.1| (hypothetical protein FisN_11Hh248 [Fistulifera solaris])

HSP 1 Score: 147.902 bits (372), Expect = 7.409e-39
Identity = 89/220 (40.45%), Postives = 128/220 (58.18%), Query Frame = 0
Query:  119 DELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEV-GETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPG 314
            +++I+L+   +    S   RA++NE LLRLE+LNPTP PA S L+NG WE                      FL++GG SPGI  L LA +L    +  VE+ G   + ISR+QPRVE    +K+  G  +++ +   LE  SG+RL ETY +A + +  V  P Q Q ++R LFV+++DDDLLVVRD  G P++L+RK+KAF   + V  + +D   PG
Sbjct:   68 NKVINLLPSTLTGTVSTETRAAINEALLRLESLNPTPDPAVSPLINGIWELKYVGGYAPEWALPSPTRDLALFLYSGGYSPGIFALTLAQKLP---AALVEMSGNLEIAISRSQPRVEASIDVKLLGGAASKVRVSAALEAQSGVRLRETYEKAYVLDREVAIPAQLQ-YQRQLFVTFVDDDLLVVRDGSGVPEVLVRKNKAFRGFSAVTESEEDLAPPG 283          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1210531423|dbj|GAX09779.1| (hypothetical protein FisN_11Lh248 [Fistulifera solaris])

HSP 1 Score: 146.362 bits (368), Expect = 2.371e-38
Identity = 89/220 (40.45%), Postives = 127/220 (57.73%), Query Frame = 0
Query:  119 DELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEV-GETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPG 314
            +++I+L+   +    S   RA++NE LLRLE LNPTP PA S L+NG WE                      FL++GG SPGI  L LA +L    +  VE+ G   + ISR+QPRVE    +K+  G  +++ +   LE  SG+RL ETY +A + +  V  P Q Q ++R LFV+++DDDLLVVRD  G P++L+RK+KAF   + V  + +D   PG
Sbjct:   67 NKVINLLPSTLSGTVSTETRAAINEALLRLETLNPTPDPAVSPLINGIWELKYVGGYAPEWALPSPTRDLALFLYSGGYSPGIFALTLAQKLP---AALVEMTGNLEIAISRSQPRVEASIDVKLLGGAASKVRVSAALEAESGVRLRETYEKAYVLDREVAIPAQLQ-YQRQLFVTFVDDDLLVVRDGSGVPEVLVRKNKAFRGFSAVTESEEDLAPPG 282          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|1072232418|gb|OEU17149.1| (hypothetical protein FRACYDRAFT_184583 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 144.05 bits (362), Expect = 1.388e-37
Identity = 87/202 (43.07%), Postives = 120/202 (59.41%), Query Frame = 0
Query:  138 RASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVE-VGETVLTISRAQPRVEVQTSLK-VFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGV-PSATDDDTSPG 314
            RA +NE+LL+LEALNPT  PA S LLNG WE                      FL++GG SPG+  LQLA +L    S  V+ VG   +TISRA PRVE    +K + G E+ + +++ LE  S +RL ETY  A++    V  P   Q + R ++V+Y+D+DLLV+RD  G P++LIRK+K+F  N G  P++ DD  +PG
Sbjct:   57 RAEINEVLLKLEALNPTTEPAQSPLLNGIWELRYAGGYTSTGSLLSPTRQLALFLYSGGYSPGLFALQLAKQL---PSNLVDIVGSLDITISRAAPRVESSVKVKTLLGGESSVKVKSNLEVLSEIRLRETYESATVLEKVVDLPKFLQ-YTRDIYVTYVDEDLLVIRDGSGVPELLIRKEKSFTRNWGTEPTSVDDKLAPG 254          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|219118506|ref|XP_002180024.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408281|gb|EEC48215.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 142.895 bits (359), Expect = 1.233e-36
Identity = 101/270 (37.41%), Postives = 138/270 (51.11%), Query Frame = 0
Query:   66 STSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWE----------------------FLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGR-ENRINIRTRLEPASGLRLEETYTEASM-GNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGV-PSATDDD 310
            ST  +S I  +DG SDV  T  S  T      M+ N +++    +     GA             D  S   R+++NE L +LEALNPT  P  S LLNG WE                      FL++GG SPG   L LA +L    S  V+VG+  + ISR QPRVE    +K+ G  E++I ++ RLE  S LR+ ETY  A + GN  +  P   Q + R L+V+Y+D+DLL+VRD+ G P++L+RK+K F    GV P   D D
Sbjct:   57 STDDTSFIYASDGDSDVVDTESSNYTPTAGEAMVSNIMDMMPRQL-----GA-------------DNVSDEARSAINEALYKLEALNPTTSPTVSPLLNGVWELRYVGGYSSDWALPSPTRQLALFLYSGGYSPGTFALALAQKL---PSSVVDVGDLEIAISRQQPRVEATVPVKILGGGESKIVVQARLETKSDLRMRETYESAQLVGNNVIELPQPLQ-YARDLYVTYVDEDLLIVRDASGVPEVLVRKEKTFSKVWGVEPGQADLD 304          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|922857252|gb|KOO25518.1| (hypothetical protein Ctob_005700 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 137.502 bits (345), Expect = 8.472e-35
Identity = 89/222 (40.09%), Postives = 127/222 (57.21%), Query Frame = 0
Query:   78 GTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYA----SGA--VEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQI-FKRPLFVSYLDDDLLVVRDSFGAPDILIR 292
              +D  S  V       E  ++G G +   A  E+ G  AK+ L S +++G L  + P  RA V E+LL LEA NPT  PA S LLNG W+FL+  G SPG+  L L  + +  A    SGA  V+VG+T LTI   QPR   +  ++V   EN + + ++LE  S +RL E YTEA    + +  P Q  + +KR + +SYLDD+++VVRD+ G PD+L+R
Sbjct:   51 AAADASSMDVKAEPAAVEQALVG-GDDYDDALFEE-GSIAKEALKSEIADG-LKGAKP-DRAVVGEILLALEAQNPTQSPATSPLLNGKWKFLYASGASPGLKALTLLMKGAKSAPKSPSGADLVDVGDTYLTIRPEQPRATAEVKVRVLSFENTVKLASKLEAESAVRLVEMYTEAQSEYMSLKLPFQAPVEYKRSVLISYLDDEMMVVRDAAGRPDVLMR 268          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|224004214|ref|XP_002295758.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585790|gb|ACI64475.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 141.354 bits (355), Expect = 1.729e-34
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 0
Query:  138 RASVNELLLRLEALNPTPMPAYSSLLNGAW---------------------EFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVF-GRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRK 293
            RAS+NE +L+LEALNPT  P YS LLNG W                      FL++GG SPG+  L LA +L    S  VE+G+  ++ISRAQPR+E +  +K+F G ++ + ++ RL+  SGLR  ETY  AS+    V  P+  Q + R L+VSY+D+D+LVVRD  G P+IL+RK
Sbjct:  108 RASINEAILKLEALNPTEDPVYSPLLNGVWILRYAGGYSDPKIPSPTRDLALFLYSGGYSPGLFALSLAQKL---PSQLVELGDLEISISRAQPRIEAKIDVKLFGGSQDEVVVKARLDEDSGLRFTETYESASVLGQVVDIPEALQ-YSRDLYVSYVDEDILVVRDGSGVPEILVRK 281          
BLAST of EWM24670.1 vs. NCBI_GenBank
Match: gi|551550872|ref|XP_005762930.1| (hypothetical protein EMIHUDRAFT_452690 [Emiliania huxleyi CCMP1516] >gi|485612111|gb|EOD10501.1| hypothetical protein EMIHUDRAFT_452690 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 128.257 bits (321), Expect = 1.724e-31
Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 0
Query:  112 DVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQL---ASRLSTYA-SGA--VEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETY--TEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTG----VPSATDDDTSPGA 315
            D G  AK+ L + V++G    ++   +A + E+LL LE+ NPT  PA S LLNG W+ L+  G +P +  L L    SRL+  + SGA   +V +  LTI   QPR E     ++   EN I + +RLE  S +RL ETY   E+   +L++PF    Q +KR + VSYLDD+LLVVRDS G PDIL+R D+A  S +     V    ++D +PGA
Sbjct:   57 DEGSIAKEALKAEVADGF--TAAAPDKAVLGEILLALESANPTRSPATSPLLNGKWKVLYASGATPSLKALMLLLKGSRLAPKSPSGAELADVQDAYLTIREEQPRAEGSLRTRLLSFENTIKLSSRLEAESAVRLVETYEAAESEYMSLKLPFQRPVQ-YKRSVLVSYLDDELLVVRDSQGRPDILLRVDEASRSPSSLGGEVSDDDENDAAPGA 269          
The following BLAST results are available for this feature:
BLAST of EWM24670.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106192|gb|EWM24670.1|0.000e+0100.00Plastid lipid-associated protein/fibrillin conserv... [more]
gi|299117370|emb|CBN75326.1|7.018e-5143.40conserved unknown protein [Ectocarpus siliculosus][more]
gi|397643599|gb|EJK75970.1|2.944e-4046.07hypothetical protein THAOC_02292 [Thalassiosira oc... [more]
gi|1210526526|dbj|GAX14707.1|7.409e-3940.45hypothetical protein FisN_11Hh248 [Fistulifera sol... [more]
gi|1210531423|dbj|GAX09779.1|2.371e-3840.45hypothetical protein FisN_11Lh248 [Fistulifera sol... [more]
gi|1072232418|gb|OEU17149.1|1.388e-3743.07hypothetical protein FRACYDRAFT_184583 [Fragilario... [more]
gi|219118506|ref|XP_002180024.1|1.233e-3637.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|922857252|gb|KOO25518.1|8.472e-3540.09hypothetical protein Ctob_005700 [Chrysochromulina... [more]
gi|224004214|ref|XP_002295758.1|1.729e-3444.38predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551550872|ref|XP_005762930.1|1.724e-3141.20hypothetical protein EMIHUDRAFT_452690 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6017rna6017Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications