rna601, rna601 (mRNA) Nannochloropsis gaditana

Overview
Namerna601
Unique Namerna601
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1448
Alignment locationCM002455.1:1501071..1501719 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100173g8.4675.mrna
Orig protein idgnl|cribi|Naga_100173g8.4675
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1501071..1501719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100173g8gene578Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna601rna601-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30069.1cds601Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna601 ID=rna601|Name=rna601|organism=Nannochloropsis gaditana|type=mRNA|length=1448bp
GAATCACAACTCTTTGTCATTTTCGGGCCACTTTTGACGCACACTGTACA
TTCATAGGCTCTTACACATACACAGCCATGAAAACCACGTTTGCCGTATG
ACAAGGCTCGTACATGTCCATTTGTTTTCCGAGGGACGACAGGCTACTTA
TGTCCTGTGTTCCTCGATGCCCTACTACCGTAGCCTCCTTCCCCCTCTTC
GACTTGATTATGTCACCTCCAGTACTCATATGGCAAGCGCTGGCACCGCT
CAACTCAGTTTCAGTGCTTTCTTGAGTGCTGCTGTCAGGACAACATTTTG
GTTGGACATCACACTTTCATTTTTGCCCCCCAGCTCTTGGCTGATCCTGG
AGTGTGCCTGCAAACTTATATTTAGTCACATTAAACATGCCAACGCGTGG
AGATGCGTCGACCTCGGTCCCATTTATCTCCACTCTTTACCCTCGTGCCT
AACGCCGGCAGACATCGTGCAAAACATACGATTTGAGTTCATTGAGCGGA
AAGCAAGTCTCTGGCGTTTGCGGAGGGCATGGGCCACTATTGAGCAATTC
GCCCCAGCAGGATTCTCCTGGACACTGAACAAAGGAATAGAGGAAGACGC
GTTGGGACGTTGGGAGTACGCTTTGGGGTGCAGTCTTCCTCCCGATCTGC
GGGCTTCGTTCCTCATACATGATGGACAGAGCTACATGGCGCAGCCTGGT
ATGATGCTTGGAGGGGGAAGGCTCCTCTCGTTGGAAGATGTTGTCATCCA
AGCGTGTCGCATGGAGCAATCTCAAAGCGACCAAGACAGGCGCTGCATGA
TAGAAGTGGCCGAAGGAGCTGATGTCCAGTCGGCAAAGACTGGAAAGGGC
GGGGAAGATGAAGGAGATAGGAATGAAGGGGAAGAGGGCTGGCGGATGGT
ACCCCTGTCGGAGGGGGCCCGCGGCCGTTCAGTGTGCATTGCTTTGCCAA
AGCGGTGGAAGAAGAAAAGAGTGAGAGGGAGACGTAAGGAAAGAGAGACT
GCTGAAGATGAAGGATTATTAGGAGGTGTGTACATTGTAACCGCGTTATC
GTGTCGAAAGCTTGCTGATAGCTGGGGCCAGTATTTGGGGACGTTGCGCT
GAGTCGATGTAAGATAGCGTGAAATATTGTGCAGAGGGATTCGTAAATCG
GAAAAATCACATATTGATAGAACAGCCGCGCTCGAGAACGAACACTTTTT
CCTGTTCGCAGGCTCTGGCTTGGATCAATATATATTCAGTAGACTGATTT
AAATATTCCACGACTTCTTGATGCGTATAGCCCATTTTTAATAGCTTGAG
GATAAAATCATTTCCTCATAGGTTCTTTCGTTGCAGACGGTTTTAGACAT
GGATTAATCTTATTCGGTCAGGTCATTGCTCTATGGACAATACCATTTTT
CTACTTTAAAGCTCTTATTTGAGAAGAAGGAAATAATCTGCGTGAAAT
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protein sequence of rna601

>rna601-protein ID=rna601-protein|Name=rna601|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MTGLSQQVSFDHETPRSWRKMEAIVSQASDAARTTYCSILHNLLSVSVHH
KLCGGGGFQPLHKSIHALYLDAYARGKSQSDVDKSILAHLTCHTCREKLM
IEFTYLHEITDTWTNSSN
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mRNA from alignment at CM002455.1:1501071..1501719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna601 ID=rna601|Name=rna601|organism=Nannochloropsis gaditana|type=mRNA|length=649bp|location=Sequence derived from alignment at CM002455.1:1501071..1501719+ (Nannochloropsis gaditana)
ATGACTGGCCTATCTCAGCAAGTGAGTTTCGACCACGAGACGCCCCGGTc
ttggaggaagatggaagcAATCGTATCGCAAGCCTCTGACGCTGCGTTCT
GAGCGTCTTCAGTCCTAAGCTTTAAGCAATGGACCAGGCGAACGACATAC
TGCTCCATTCTCCATAATCTTTTGAGCGTGAGTGTGCATCATAAACtatg
cggggggggggggtttcAACCGCTGCATAAAAGCATACATGCGCTGTATG
TCATGGAACACCGTCCATTCCCACTGCGTCCTCCTGAAGCAAGGCGAGGC
TATTACCGCACGATAATTCGAAGAATATTTCATGGATAAAGCTACCTCGA
CGCGTATGCGAGGGGGAAGTCACAGTCTGATGTTGATAAAAGCATCCTCG
CACATTTGACGTGCCATACGTGCCGGGAAGTTAGAGAGACGTCGGCCGGT
ACGGCGGACTGAATTAGGTAAGTTGACAATAGTTTTGGTCAGGATGGCGC
TTCTCTGAGATTGTATGCCGTTTTGTGGGCGCTTAAATGCATTATTCTTT
AAAAAAAGATATGTGGTATTGATAGATATATAGAAGTTGATGATTGAATT
TACCTATCTACATGAGATTACTGACACTTGGACGAATAGTTCTAATTAG
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Coding sequence (CDS) from alignment at CM002455.1:1501071..1501719+

>rna601 ID=rna601|Name=rna601|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002455.1:1501071..1501719+ (Nannochloropsis gaditana)
ATGACTGGCCTATCTCAGCAAGTGAGTTTCGACCACGAGACGCCCCGGTc
ttggaggaagatggaagcAATCGTATCGCAAGCCTCTGACGCTGCGCGAA
CGACATACTGCTCCATTCTCCATAATCTTTTGAGCGTGAGTGTGCATCAT
AAACtatgcggggggggggggtttcAACCGCTGCATAAAAGCATACATGC
GCTCTACCTCGACGCGTATGCGAGGGGGAAGTCACAGTCTGATGTTGATA
AAAGCATCCTCGCACATTTGACGTGCCATACGTGCCGGGAAAAGTTGATG
ATTGAATTTACCTATCTACATGAGATTACTGACACTTGGACGAATAGTTC
TAATTAGATGACTGGCCTATCTCAGCAAGTGAGTTTCGACCACGAGACGC
CCCGGTcttggaggaagatggaagcAATCGTATCGCAAGCCTCTGACGCT
GCGCGAACGACATACTGCTCCATTCTCCATAATCTTTTGAGCGTGAGTGT
GCATCATAAACtatgcggggggggggggtttcAACCGCTGCATAAAAGCA
TACATGCGCTCTACCTCGACGCGTATGCGAGGGGGAAGTCACAGTCTGAT
GTTGATAAAAGCATCCTCGCACATTTGACGTGCCATACGTGCCGGGAAAA
GTTGATGATTGAATTTACCTATCTACATGAGATTACTGACACTTGGACGA
ATAGTTCTAATTAGATGACTGGCCTATCTCAGCAAGTGAGTTTCGACCAC
GAGACGCCCCGGTcttggaggaagatggaagcAATCGTATCGCAAGCCTC
TGACGCTGCGCGAACGACATACTGCTCCATTCTCCATAATCTTTTGAGCG
TGAGTGTGCATCATAAACtatgcggggggggggggtttcAACCGCTGCAT
AAAAGCATACATGCGCTCTACCTCGACGCGTATGCGAGGGGGAAGTCACA
GTCTGATGTTGATAAAAGCATCCTCGCACATTTGACGTGCCATACGTGCC
GGGAAAAGTTGATGATTGAATTTACCTATCTACATGAGATTACTGACACT
TGGACGAATAGTTCTAATTAGATGACTGGCCTATCTCAGCAAGTGAGTTT
CGACCACGAGACGCCCCGGTcttggaggaagatggaagcAATCGTATCGC
AAGCCTCTGACGCTGCGCGAACGACATACTGCTCCATTCTCCATAATCTT
TTGAGCGTGAGTGTGCATCATAAACtatgcggggggggggggtttcAACC
GCTGCATAAAAGCATACATGCGCTCTACCTCGACGCGTATGCGAGGGGGA
AGTCACAGTCTGATGTTGATAAAAGCATCCTCGCACATTTGACGTGCCAT
ACGTGCCGGGAAAAGTTGATGATTGAATTTACCTATCTACATGAGATTAC
TGACACTTGGACGAATAGTTCTAATTAG
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Synonyms
Publications