rna6008, rna6008 (mRNA) Nannochloropsis gaditana

Overview
Namerna6008
Unique Namerna6008
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1089
Alignment locationCM002467.1:340647..341697 +

Link to JBrowse

Properties
Property NameValue
Producthistone h4
Orig transcript idgnl|cribi|Naga_100123g11.6333.mrna
Orig protein idgnl|cribi|Naga_100123g11.6333
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:340647..341697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100123g11gene5804Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6008rna6008-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24676.1cds5993Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6008 ID=rna6008|Name=rna6008|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp
TCGAAGACGGGCGTGTTGCCCGTCGTCAAGTGAACATTTATCAGTTGCCC
CGTGTGCTGTGGTGCATGTTACTCGGCAAACACATTTCTTCGAATCGAGC
TTTCTCGATTATTTCACGGAACACCACTTCCGTCAGGAAAGACATACGAC
TGCAATAGAGTTTGCGGGTATCATGACACTAATTGCATCTATTTACTACG
TCGTTCACTCCACAGCTCAAAACCCTCTTATAAAATGGCCCGCACCAAGC
AAACTGCCCGCAAGTCCACCGGCGGCAAGGCGCCCCGCAAGCAGCTCGCC
ACCAAGGCGGCACGCAAGTCCGCACCCGCCACCGGCGGTGTGAAGAAGCC
CCACCGTTACCGCCCTGGAACTGTGGCCCTCCGTGAGATCCGCCGCTACC
AGAAGAGCACTGAGCTCCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTC
CGTGAGATCGCTCAGGACTTCAAGACCGACCTGCGATTCCAGGGGTCTGC
CGTCCTTGCGCTGCAGGAGGCTACTGAGGCTTACCTCGTGGGCCTCTTCG
AGGACACCAACTTGGCTGCCATCCACGCCAAGCGTGTGACGATCATGCCC
AAGGACGTGCAGCTCGCCCGCCGCATCCGTGGAGAGCGCTCTTAAGTATG
CGCTCTCTCCGTGAGAAAGTGTGGTGTTTCGACCAGTAAAGAGACTTCAA
AAATCGAAAAATATCAGACGAAACCCACATCTCGACCACCAGCCCAGGGT
TCTCTTGAACCCCCCGTGTTCTTCTCAGCCCTCGCTTCGCTTTCTTTTGC
TGCACCTGCCGATGTGCATGTCGACGTTGTTACGTTGTTGCCCTGGATGC
CCGACAATACTCTGTGGTTCAATGCAGGGGCAGTGGCTCGTGGTATGCCT
TGTGCAGTCCAGCGGCCCACCGCTTCCCCCGGCGTGCGTGGAATCGCCTC
CGGCCAGTCCTTTAAGAGAGGATATAGGCGGGTTCCTCCTAGGCGAAGTA
CAGATAACAGAACGATGTGCGGACGCCCCAAAATTTGAAACATGTCGCAA
ACAGAACAGATTTTTCAATCCTATTCGAACAGAAGACGT
back to top

protein sequence of rna6008

>rna6008-protein ID=rna6008-protein|Name=rna6008|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG
back to top

mRNA from alignment at CM002467.1:340647..341697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6008 ID=rna6008|Name=rna6008|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp|location=Sequence derived from alignment at CM002467.1:340647..341697+ (Nannochloropsis gaditana)
AGCTTCTTTCTCGTACCATCGCGCGTCTCTCTACCTTTCCGACGATTTTT
TGTTTGCATCTCCCTGACGTGTCGTAGCATGCATAATGTCTATCCATTCC
ACATGAATAATCGCCTACGCAACATTTCGACGCTCGTAATTGTCAACTCT
GGAAAGTAATTGTTTGACGTGGCGCGTTGCTTGGGTACACTCAGGTGCGA
GCTGCGCGCATCCTAAAACGCGAGTGTTCTCCAAGATGGTACAGATTTAA
CCATGGCACAAGCTTACTTAGTATCTCACATCATTTCTACATTCTTTTTT
CATAGCTAAACACCTCACTCATAAATAATGTCTGGACgcggcaagggcgg
caagggGCTCGGCAAAGGCGGCGCTAAGCGCCACCGCAAGGTGTTGCGCG
ACAACATCCAGGGCATTACCAAGCCCGCCATCCGTCGTTTGGCCCGCCGA
GGTGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGTGT
GCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTATACTG
AGCATGCCCGTCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCTCTC
AAGCGACAAGGCCGCACCCTCTACGGCTTCGGCGGTTAAATGTGCAGCCT
TACGAATGGTATATCCGTTCAGGTCTGACGATAATTTCAAAACTCAGAAA
AAAACAATCCGGGTTCCTTAGAACCCCTCCTACATCCAAAGTCGCTTACC
CGTTTCACATTCATTTATTTTTTCTTTGATGGGATGCTGAATCTAAGCTA
AGACTTAAAGAATTGAGAGGATTTTGAGGGGCACTTCCAGGAGGCTCGGA
CATGCAAAGCAGGGCCCAGGTGCTTCTCGGGGACTTGGTCAGCGCTACAA
GTTGGCTTCTTAAAAATGTCCTACCAAATTGGTGGCGGACGTTTCCTGTC
CTTGTGTAGGGCATGCAGGGGTTGTCTTGATGTGCCGGGGTAGTAGATTG
AATTAAGACTCAACACGCGTGACAAAGCAAATTATTTACGGCCATGACAG
G
back to top

Coding sequence (CDS) from alignment at CM002467.1:340647..341697+

>rna6008 ID=rna6008|Name=rna6008|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at CM002467.1:340647..341697+ (Nannochloropsis gaditana)
ATGTCTGGACgcggcaagggcggcaagggGCTCGGCAAAGGCGGCGCTAA
GCGCCACCGCAAGGTGTTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGTCGTTTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCGGGCCTC
ATCTACGAGGAGACTCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTCACCTATACTGAGCATGCCCGTCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCTCTCAAGCGACAAGGCCGCACCCTCTACGGC
TTCGGCGGTTAA
back to top
Synonyms
Publications