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Properties
| Property Name | Value |
|---|
| Product | SNARE associated Golgi protein |
| Orig transcript id | gnl|cribi|Naga_100123g13.6335.mrna |
| Orig protein id | gnl|cribi|Naga_100123g13.6335 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:336952..339278 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6006 ID=rna6006|Name=rna6006|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp
CCTGATTTCAAACAAATGAACGTGAAGCTGATGCTAAACCCAGAGACGCG
GGCAGGTCGGGGCCGAAGCACTCCACTCGACGCTAGCGAAGGCGGCGCCT
CACCGACACTGCAGACCGATGTATAACGCACTTTCTCGACTGCAATGGCA
TGTAGCTCGATGTCAGCCAAATCTGACTTCCGCTTTCTATTGCAGGCGAA
GCACTTTTCCCTTGGTAGCAAGCGCATGCACCATCTCTTCGCTCTGTCAA
CCTCCCTCCTGCTTCCCCCCGCGGCCCCTCACCAATCTCTACGTCTCCCG
CGCCTCTGAACGCCCAAGCTAGCTGAAGCCTGGCCGTGCTATCTAGTTTT
AGGGCGACATGGCCTGGCGAGGCGCTTTTCGGTCCTTCTTTAGCCGTGCC
CGGGCTCGATATATGCGAAGCTCAGCTGAGCTATTGGACGAGACGCGCTA
CAACGTCGTGGACCTCGTCAAGTTCAGCTGCACGCTCTACTGCTTGCACG
AGTATGTGGCCGACGTGACAGCCCTGGCTGGGCCGTCCATGCTCCCCACC
TTCAATGAGGCGGGGGACATCGTCGTGGTCGACTGCCTGCACGTAAAGCT
CGGAAGACCCCTCCAAAAAGGCGACATCGTCATCGCCCGCTCGCCCTCGA
ACCCGTCGAACACGGTCTGCAAGCGCGTCCTCGGCCTCCCTGGCGACCGT
ATCCTGATACAGCCACAGTATTGGTACCAGCAAGAACAGGTCTTGCAAGT
CCCGCCGGGGATGCTCTGGCTCGAGGGCGACAACCCCTTCAACTCCACCG
ACTCCCGCACCTACGGTCCCGTGCCCATGGCCCTGGTCAAAGGCCTCGTC
GCCTTCAAGCTGTACCCGCTCCATGAGTTCGGGCCTCTCCCACGGACATT
CCGGAGGCCGGGGGCGCGCTATCCTAAGCTTGATAGGGAGACGGGGATCC
GAAAATAGCTAGCTTCGAGGCGCACAAAAAGGGGGGGGGGGCTGTAGGTA
AAGGCGCACGTAATTCATATTAAATAACCATTTATGCATCGCTTTCAATG
CGTGTTTTTACGCGCCTCCCTCCATTTATTCCACATTGGGGCGCTGACCT
TACTGAAGCGGATCTCGCTCCCACCCTATCTGTTGACGTTCGAAGGCGCC
CAGCCGGCCCGCATCACATTGAAGTGCAAGGCAGGGGCTGTCGCGAAATC
ATTTATCTGGTCCATCCTCAACGAGCAAGGCAATTGCTTATGATGCGAGT
CTACTTTTGGGCCCTCCCGGCCGTGCTT back to topprotein sequence of rna6006 >rna6006-protein ID=rna6006-protein|Name=rna6006|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MPSTIRSTSPPRSNENRNGTSLWRLSGVLPAGSQHSPSDYARLETGHGCG
ADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASTFLVSSSSPSS
SPPAPHATALPSVRTLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPP
SRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSPQPPTASGAF
VSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVE
EHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTF
LMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMV
FLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALR
GVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREE
PSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQ
TEEGEEGKENVATEKKGGGDGGVEGTSSFVGPCSGGRGCGDAAVV back to topmRNA from alignment at CM002467.1:336952..339278+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6006 ID=rna6006|Name=rna6006|organism=Nannochloropsis gaditana|type=mRNA|length=2327bp|location=Sequence derived from alignment at CM002467.1:336952..339278+ (Nannochloropsis gaditana)
CCCGACCTGCCCGCGTCTCTGGGTTTAGCATCAGCTTCACGTTCATTTGT
TTGAAATCAGGAAATTCATCGCGTCGCTCACTCAAACAGGAGACATGCCA
TCGACAATCCGAAGTACGTCGCCACCACGGAGCAATGAAAACAGGAATGG
AACCAGTTTATGGCGTCTGGTACGTGACACGTAACTATAACGGTCAGGGG
GGCACggccaggggaaggacaATGTGCATTGCGCATCCGCAGCGTCCGGT
GCGATAACATGCAGACGCACCGAATTGTGCCCGAAATGAGACGTCCGCTG
AAATGCCGCTCATCCGCAGACGTGCAGAGTCGTCGGGACGGTGAAAAGCA
GAGCAGCATGTGCTGGATTCCGAAATGCCTAGACGCCGCCACAATGCGTC
CTTTTATTCGTTGTGGGGATGCTTCGATGCAAGTCAACTTAATCTAGAGT
ACACAAAATCATACAGAGGCATTGTTTGACACGGGATGGGTAGTGAAAGC
TTACTTCGTGCTTGGGACCATATAGCGACAACGATGCCCTCTAGCACCCA
TGTCCTCACTCTTGGCATGATTATACCTACGAACGCCCGAATGCAACCTG
ATTGCCTCCATTTAAACACAGAGTGGCGTGCTTCCAGCCGGTTCCCAACA
TTCGCCCTCGGACTACGCACGCCTGGAGACAGGGCATGGCTGTGGCGCGG
ACCGAAACCACCGGGTGCTCGAGGcgcggggcggggcggacgaggaggaa
gacgaggtaGAGATCCTCTTTGCCTCGCCAGCGACCCCCACGGACGACCA
GGGTCGAGCCTCCACGTTCCtggtctcttcctcttccccctccagctcgc
cccccgccccccacgccacggccttgcccTCCGTGAGAACCCTCCTACGG
CCCCTGGGcgccatcttctccctctcctcgtcctctgcctccggaTGTAG
GCATGGAGGCGCcaggggcgcgggaggaagtctccatcttcccccttccc
gggGCTCTCCCCCGAGCCGATTTCTGCGGCGGATGCGGACGTCATCCAGC
CACGAGCACGCCGAAGGGCAGGgacgcacctcctcctcctcctcctcctt
ctcctcctcctcctcgccgcagCCCCCCACCGCCAGCGGGGCCTTCGTCT
CTCCGCGTTTCCACAGCCACGCCCCGCCCTGGGTGCAGGTCacctacttc
ctcctcctcggctgcctcttcctcgccgccCTGGTCGACAGCTTCACGAG
CCGGCACCTCTACCATCTGCTCGAGCATCTCTTCgcctgggtggaggagc
atCAGATCCTGGGCCCCCTGGTCTTCTGGTCGGCTGTCGTCGTCTTCTCG
GTCGTGTGCGTGCCGGAGAGCGCGCTCACCGTGGGCGGCGGCTACATCTT
CGCCAAGGCCCATGGGGTCGGCTggggcatcctcctctgcacctTCCTCA
TGATGGCGGGGGGCGTGGTCGGCTCCGTCATAGCCTTTTTGGTCGCGCGC
TACCTCGCATTCGACACGGTGCAGCGCTGGGCTCGCCGGCACCGACTCCT
CCGGGCACTGGACCTCTCTCTGgtggaaaatggcgcgaaaatggTCTTCT
tgctccgcctctcccccttcctccctgcgccaCCGCTCTCCTATTTGTTG
GGCACCACCAGCGTCAAGCTCTCGGATTTCGTGCTGGGCAGCACAGGCAT
GCTTCCCTGGATCGTGACTTGTTCGTATCTCGGGAGCGCCTTGAGGGGCG
TGGCGGACGtggccgggaaggggaggaggggccaaAGCAAGTGGGCGTAC
GCCCTGTACGCgctgggggcggtggggacgatgggggtggtggcggccat
CGGCATCTACACgcggagggcgatggaggagatttTGCGGGAGGAGCcca
gcgagggggaggagaggaaggaagctgaggaccgggggaggagggaggac
ggagtgCACACTGAGATGAATGCGGTGTTGCGGGTGGAAAACagtgggga
agaagaacaagggatggaagggcgggagggggttggggggcggcagacgg
aggagggagaggaggggaaggagaacgtGGCGACCGAAAaaaaaggcggg
ggagatgGTGGAGTGGAGGGAACCAGCTCCTTCGTGGGGCCATGctcagg
aggcagagggtgCGGCGACGCCGCTGTGGTctagggggaaggagaatcgg
acgggcgagggggcCGCTTCCTTGGGCTGGGCTGCGCTTTTGTGTAGGGA
CGAGGTTTTATAATGCGAAAAAGCGAGAATTGCCTCGTGTAGTGTTTAAA
GAAATATACATATAACGTCTTCTGTTC back to topCoding sequence (CDS) from alignment at CM002467.1:336952..339278+ >rna6006 ID=rna6006|Name=rna6006|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at CM002467.1:336952..339278+ (Nannochloropsis gaditana)
ATGCCATCGACAATCCGAAGTACGTCGCCACCACGGAGCAATGAAAACAG
GAATGGAACCAGTTTATGGCGTCTGAGTGGCGTGCTTCCAGCCGGTTCCC
AACATTCGCCCTCGGACTACGCACGCCTGGAGACAGGGCATGGCTGTGGC
GCGGACCGAAACCACCGGGTGCTCGAGGcgcggggcggggcggacgagga
ggaagacgaggtaGAGATCCTCTTTGCCTCGCCAGCGACCCCCACGGACG
ACCAGGGTCGAGCCTCCACGTTCCtggtctcttcctcttccccctccagc
tcgccccccgccccccacgccacggccttgcccTCCGTGAGAACCCTCCT
ACGGCCCCTGGGcgccatcttctccctctcctcgtcctctgcctccggaT
GTAGGCATGGAGGCGCcaggggcgcgggaggaagtctccatcttccccct
tcccgggGCTCTCCCCCGAGCCGATTTCTGCGGCGGATGCGGACGTCATC
CAGCCACGAGCACGCCGAAGGGCAGGgacgcacctcctcctcctcctcct
ccttctcctcctcctcctcgccgcagCCCCCCACCGCCAGCGGGGCCTTC
GTCTCTCCGCGTTTCCACAGCCACGCCCCGCCCTGGGTGCAGGTCaccta
cttcctcctcctcggctgcctcttcctcgccgccCTGGTCGACAGCTTCA
CGAGCCGGCACCTCTACCATCTGCTCGAGCATCTCTTCgcctgggtggag
gagcatCAGATCCTGGGCCCCCTGGTCTTCTGGTCGGCTGTCGTCGTCTT
CTCGGTCGTGTGCGTGCCGGAGAGCGCGCTCACCGTGGGCGGCGGCTACA
TCTTCGCCAAGGCCCATGGGGTCGGCTggggcatcctcctctgcacctTC
CTCATGATGGCGGGGGGCGTGGTCGGCTCCGTCATAGCCTTTTTGGTCGC
GCGCTACCTCGCATTCGACACGGTGCAGCGCTGGGCTCGCCGGCACCGAC
TCCTCCGGGCACTGGACCTCTCTCTGgtggaaaatggcgcgaaaatggTC
TTCTtgctccgcctctcccccttcctccctgcgccaCCGCTCTCCTATTT
GTTGGGCACCACCAGCGTCAAGCTCTCGGATTTCGTGCTGGGCAGCACAG
GCATGCTTCCCTGGATCGTGACTTGTTCGTATCTCGGGAGCGCCTTGAGG
GGCGTGGCGGACGtggccgggaaggggaggaggggccaaAGCAAGTGGGC
GTACGCCCTGTACGCgctgggggcggtggggacgatgggggtggtggcgg
ccatCGGCATCTACACgcggagggcgatggaggagatttTGCGGGAGGAG
Cccagcgagggggaggagaggaaggaagctgaggaccgggggaggaggga
ggacggagtgCACACTGAGATGAATGCGGTGTTGCGGGTGGAAAACagtg
gggaagaagaacaagggatggaagggcgggagggggttggggggcggcag
acggaggagggagaggaggggaaggagaacgtGGCGACCGAAAaaaaagg
cgggggagatgGTGGAGTGGAGGGAACCAGCTCCTTCGTGGGGCCATGct
caggaggcagagggtgCGGCGACGCCGCTGTGGTctagATGCCATCGACA
ATCCGAAGTACGTCGCCACCACGGAGCAATGAAAACAGGAATGGAACCAG
TTTATGGCGTCTGAGTGGCGTGCTTCCAGCCGGTTCCCAACATTCGCCCT
CGGACTACGCACGCCTGGAGACAGGGCATGGCTGTGGCGCGGACCGAAAC
CACCGGGTGCTCGAGGcgcggggcggggcggacgaggaggaagacgaggt
aGAGATCCTCTTTGCCTCGCCAGCGACCCCCACGGACGACCAGGGTCGAG
CCTCCACGTTCCtggtctcttcctcttccccctccagctcgccccccgcc
ccccacgccacggccttgcccTCCGTGAGAACCCTCCTACGGCCCCTGGG
cgccatcttctccctctcctcgtcctctgcctccggaTGTAGGCATGGAG
GCGCcaggggcgcgggaggaagtctccatcttcccccttcccgggGCTCT
CCCCCGAGCCGATTTCTGCGGCGGATGCGGACGTCATCCAGCCACGAGCA
CGCCGAAGGGCAGGgacgcacctcctcctcctcctcctccttctcctcct
cctcctcgccgcagCCCCCCACCGCCAGCGGGGCCTTCGTCTCTCCGCGT
TTCCACAGCCACGCCCCGCCCTGGGTGCAGGTCacctacttcctcctcct
cggctgcctcttcctcgccgccCTGGTCGACAGCTTCACGAGCCGGCACC
TCTACCATCTGCTCGAGCATCTCTTCgcctgggtggaggagcatCAGATC
CTGGGCCCCCTGGTCTTCTGGTCGGCTGTCGTCGTCTTCTCGGTCGTGTG
CGTGCCGGAGAGCGCGCTCACCGTGGGCGGCGGCTACATCTTCGCCAAGG
CCCATGGGGTCGGCTggggcatcctcctctgcacctTCCTCATGATGGCG
GGGGGCGTGGTCGGCTCCGTCATAGCCTTTTTGGTCGCGCGCTACCTCGC
ATTCGACACGGTGCAGCGCTGGGCTCGCCGGCACCGACTCCTCCGGGCAC
TGGACCTCTCTCTGgtggaaaatggcgcgaaaatggTCTTCTtgctccgc
ctctcccccttcctccctgcgccaCCGCTCTCCTATTTGTTGGGCACCAC
CAGCGTCAAGCTCTCGGATTTCGTGCTGGGCAGCACAGGCATGCTTCCCT
GGATCGTGACTTGTTCGTATCTCGGGAGCGCCTTGAGGGGCGTGGCGGAC
GtggccgggaaggggaggaggggccaaAGCAAGTGGGCGTACGCCCTGTA
CGCgctgggggcggtggggacgatgggggtggtggcggccatCGGCATCT
ACACgcggagggcgatggaggagatttTGCGGGAGGAGCccagcgagggg
gaggagaggaaggaagctgaggaccgggggaggagggaggacggagtgCA
CACTGAGATGAATGCGGTGTTGCGGGTGGAAAACagtggggaagaagaac
aagggatggaagggcgggagggggttggggggcggcagacggaggaggga
gaggaggggaaggagaacgtGGCGACCGAAAaaaaaggcgggggagatgG
TGGAGTGGAGGGAACCAGCTCCTTCGTGGGGCCATGctcaggaggcagag
ggtgCGGCGACGCCGCTGTGGTctag back to top
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