EWM24678.1, cds5991 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|585106202|gb|EWM24678.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 1091.64 bits (2822), Expect = 0.000e+0 Identity = 545/545 (100.00%), Postives = 545/545 (100.00%), Query Frame = 0
Query: 1 MPSTIRSTSPPRSNENRNGTSLWRLSGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASTFLVSSSSPSSSPPAPHATALPSVRTLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSPQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQTEEGEEGKENVATEKKGGGDGGVEGTSSFVGPCSGGRGCGDAAVV 545
MPSTIRSTSPPRSNENRNGTSLWRLSGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASTFLVSSSSPSSSPPAPHATALPSVRTLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSPQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQTEEGEEGKENVATEKKGGGDGGVEGTSSFVGPCSGGRGCGDAAVV
Sbjct: 1 MPSTIRSTSPPRSNENRNGTSLWRLSGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASTFLVSSSSPSSSPPAPHATALPSVRTLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSPQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQTEEGEEGKENVATEKKGGGDGGVEGTSSFVGPCSGGRGCGDAAVV 545
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|553182127|ref|XP_005853682.1| (snare associated golgi protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295377|gb|EKU22676.1| snare associated golgi protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0 Identity = 474/477 (99.37%), Postives = 474/477 (99.37%), Query Frame = 0
Query: 26 SGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASTFLVSSSSPSSSPPAPHATALPSVRTLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSS-PQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQT 501
SGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRAS FLVSSSSPSSSPPAPHATALPSVR LLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSS PQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQT
Sbjct: 7 SGVLPAGSQHSPSDYARLETGHGCGADRNHRVLEARGGADEEEDEVEILFASPATPTDDQGRASAFLVSSSSPSSSPPAPHATALPSVRNLLRPLGAIFSLSSSSASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSSPQPPTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGEEEQGMEGREGVGGRQT 483
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|403342766|gb|EJY70706.1| (hypothetical protein OXYTRI_08432 (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 131.724 bits (330), Expect = 1.100e-29 Identity = 68/219 (31.05%), Postives = 116/219 (52.97%), Query Frame = 0
Query: 238 LYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRH-----RLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGS-TGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREE 450
L+ ++E F W E H G ++ V +V +P + L +GG IF K G G +L TFL++ V+G VI F++ R+ ++ W R+H +L RA+DL L NG KMV L+R++P +P Y++ TS+++ DFV GS GM P +Y+G L ++DV G G W L +G V + + + + +++ + ++++ +
Sbjct: 179 LFLMVEPFFFWFENHFYQGTALYVIIYVAMTVFFIPTTFLQLGGALIFTKFKGPTTGFILTTFLVIFSTVLGGVIGFVIGRFF----IRNWIRKHLTRRIKLFRAIDLGLKHNGFKMVVLMRMTPIMPHNLFPYIMSVTSLRIKDFVTGSCAGMFPNTCIYTYIGMQLDSISDVI-DGNYGLGPWQPVLLTVGIVMIVVLTSLMITFSKEELNKLIQSD 392
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|298705568|emb|CBJ28819.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 128.642 bits (322), Expect = 1.995e-29 Identity = 77/241 (31.95%), Postives = 130/241 (53.94%), Query Frame = 0
Query: 233 FTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVC-VPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGV-------ADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGR 465
F + L LE WVE++ LG L F + V VF+ VC +P S LT+G G +F +A G G GIL+ + ++AG VGS++AFL+ R++ + Q + ++L+A++ ++ G K+V LLRLSP +P +Y++G T V D+ +G G +P V ++G+ G+ + + G G + + +G + T+ V I IY +RA+ ++L E+ E E + + G
Sbjct: 69 FVADTLTSFLE----WVEDNPGLGALAF-ALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEEEESEDGNNGTVQLIVGI--VGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMGLESGN 302
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|1210528348|dbj|GAX13037.1| (hypothetical protein FisN_2Hh518 [Fistulifera solaris]) HSP 1 Score: 125.946 bits (315), Expect = 2.328e-28 Identity = 91/336 (27.08%), Postives = 163/336 (48.51%), Query Frame = 0
Query: 160 LRRMRTSSSHE---HAEGQGRTSSSSSSF----SSSSSPQPPTASGAFVSPRFHSHAPPW-VQVTYFLLLGCLFLAALVDSFT----SRHLY-HLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPE-SALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGS---ALRGVADVAGKGRRGQSKWAYALYALGAVGTM--GVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNA 476
+RR + S E + + ++ S+ +F +++ P+ T+ + R + P + +L LF+ L D+ R L E WV++H + G + F+ + V+ +P + LTVG GYI+ A+G G+ L TF+ + G +G+VI FL+ RYL + V++W R++ L A+D++ E+G +++ +L L+P LP P++Y+ GTTS+ L FVL LP ++ +++G+ AL + R+ + L +G M G+ I + +E + +P E E++ E D E + T M A
Sbjct: 1 MRRTKRDSDDEGPDYESDESQSIESARAFLPLETANGDPEEETSPIVEAATRLQNCLPNVSAKKVISTVLTSLFVIILWDAVMRDPEDRFLQPDFAERFLQWVQDHPLKGIVAFFVVIATAVVLMIPIGTPLTVGCGYIYKGAYGWKLGLTLATFVALGGSALGAVICFLLGRYLMREQVRKWVRKYPLFDAIDMAAAEHGLRIMAMLYLTPILPLGPVAYMCGTTSMALHHFVLAKVASLPLMLLYAFIGASTGALLSHGKSQEEFRKIEENQTLILSGIGLSFVMIAGITRNIKKELNKILERQKKHKPGEIEQQDEPRD---EETPIETGMTA 333
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|678324309|emb|CDW82257.1| (UNKNOWN [Stylonychia lemnae]) HSP 1 Score: 124.79 bits (312), Expect = 6.377e-28 Identity = 68/216 (31.48%), Postives = 112/216 (51.85%), Query Frame = 0
Query: 241 LLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRH-----RLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGS-TGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREE 450
++E F W E H G ++ V ++ +P + L +GG IF K G G LL FL++ VVG VI F++ R+ ++ W R+H +L RA+DL L NG KMV L+R++P +P Y++ TS+++ DFV GS GM P Y+G L VAD+ G G W L +G V + + + + +++ + ++++ +
Sbjct: 105 MIEPFFFWFEIHFYQGISLYVIIFVAMTIFFLPTTFLNLGGALIFTKFKGPTVGFLLTVFLIILSSVVGGVIGFVIGRFF----IRNWIRKHLTRRIKLFRAIDLGLKNNGFKMVLLMRMTPIMPHNLFPYIMSVTSLRIKDFVTGSIVGMFPNTCIYVYIGMQLDSVADII-DGNYGLGPWQPVLITVGIVMVVVLTSLMITFSKEELNKLIQTD 315
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|1210530404|dbj|GAX10988.1| (hypothetical protein FisN_2Lh518 [Fistulifera solaris]) HSP 1 Score: 124.02 bits (310), Expect = 1.066e-27 Identity = 70/226 (30.97%), Postives = 122/226 (53.98%), Query Frame = 0
Query: 243 EHLFAWVEEHQILGPLVFWSAVVVFSVVCVPE-SALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGS---ALRGVADVAGKGRRGQSKWAYALYALGAVGTM--GVVAAIGIYTRRAMEEILREEPSEGEERKEAED 462
E WV++H + G + F+ + V+ +P + LTVG GYI+ A+G G+ L TF+ + G +G+VI FL+ RYL + V++W R++ L A+D++ E+G +++ +L L+P LP P++Y+ GTTS+ L FVL LP ++ +++G+ AL + R+ + L +G M G+ I + +E + +P E E++ E D
Sbjct: 97 ERFLQWVQDHPLKGIVAFFLVIATAVVLMIPIGTPLTVGCGYIYKGAYGWKLGLTLATFVALGGSALGAVICFLLGRYLMREQVRKWVRKYPLFDAIDMAAAEHGLRIMAMLYLTPILPLGPVAYMCGTTSMALHHFVLAKVASLPLMLLYAFIGASTGALLSHGKSQEEFRKIEENQTLILSGIGLSFVMIAGITRNIKKELNKILERQKKHKPGEIEQQDEPRD 322
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|1049314294|gb|OCQ92533.1| (hypothetical protein BCR12_17405 [Limnothrix sp. P13C2]) HSP 1 Score: 118.242 bits (295), Expect = 7.680e-27 Identity = 83/221 (37.56%), Postives = 120/221 (54.30%), Query Frame = 0
Query: 242 LEHLFAWV-EEHQILGPLVFWSAV------VVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTV-QRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADV-AGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSE 453
++ WV E LGP WS V VV +V VP S LT+G G +F GVGWG + ++ +GS+ AFLV RY D V QRW +R +A+D ++ E+G K+V L+RLSP P L+Y+LG T V + D++L S GMLP V Y+G++ R +A + AG G R +S + L+ LG + T+ V + R A++ I P +
Sbjct: 4 VQAFLEWVLSEIMHLGP---WSGVAFMVVYVVATVALVPGSLLTLGAGVLF----GVGWG----SVIVFWAATLGSLAAFLVGRYGIRDWVEQRWIAGNRQFQAIDRAIAEDGLKIVLLMRLSPLFPFNALNYMLGLTQVSIRDYLLASIGMLPGTVAYVYIGASFRDLASLFAGYGERAKSPIEWLLFILGLIATLVVTGIVTKAARSALDRIAASTPPD 213
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|1124126525|gb|OKY71901.1| (hypothetical protein BJG00_08640 [Limnothrix sp. CACIAM 69d]) HSP 1 Score: 117.472 bits (293), Expect = 8.530e-27 Identity = 78/204 (38.24%), Postives = 114/204 (55.88%), Query Frame = 0
Query: 255 LGP---LVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTV-QRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADV-AGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSE 453
LGP + F VV +V VP S LT+G G +F GVGWG + ++ +GS+ AFLV RY D V QRW +R +A+D ++ E+G K+V L+RLSP P L+Y+LG T V + D++L S GMLP V Y+G++ R +A + +G G R +S + L+ LG V T+ V + R A++ I P +
Sbjct: 3 LGPWSGVAFMVVYVVATVALVPGSLLTLGAGVLF----GVGWG----SVIVFWAATLGSLAAFLVGRYGIRDWVEQRWIAGNRQFQAIDRAIAEDGLKIVLLMRLSPLFPFNALNYMLGLTQVSIRDYLLASIGMLPGTVAYVYIGASFRDLASLFSGYGERAKSPIEWLLFVLGLVATLVVTGIVTKAARSALDRIAASTPPD 198
BLAST of EWM24678.1 vs. NCBI_GenBank
Match: gi|219129885|ref|XP_002185108.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403287|gb|EEC43240.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 118.627 bits (296), Expect = 3.504e-26 Identity = 71/251 (28.29%), Postives = 135/251 (53.78%), Query Frame = 0
Query: 219 LLLGCLFLA----ALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGI---YTRRAMEEILREEPSEGEERKEAED 462
L++G L L ++DS T+R++ ++ W+EE+ + G +F +++ +P S LT+G G++FA + G+G G+++ F + G +G+ +F + RYL D + +++ + ALD++L ENG K++ LLRLSP +P ++Y+ G T+V + D++L +LP +LG++ ++ S + LG V +G + AI I Y R+ + +L + +E E+ +E +
Sbjct: 24 LVIGLLLLGFVAFVILDSLTNRYVRDGIDSFLDWIEENSVEGIFLFVLVYFAATILFIPGSILTLGAGFVFASSFGLGLGLVIGVFAVFLGASLGATASFFIGRYLLRDQATKLTKKYAVFEALDVALQENGLKILVLLRLSPIVPFNAINYICGVTAVSIRDYILALFAILPGTTLYVFLGASAGSLS--DSASSGDDSTVTITVVVLGIV--LGFI-AIWISARYARKELNRVLEQRRAESEQSEETAE 269 The following BLAST results are available for this feature:
BLAST of EWM24678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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