rna6005, rna6005 (mRNA) Nannochloropsis gaditana

Overview
Namerna6005
Unique Namerna6005
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length651
Alignment locationCM002467.1:335735..337012 -

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Properties
Property NameValue
Productmitochondrial inner membrane protease subunit 1
Orig transcript idgnl|cribi|Naga_100123g14.6339.mrna
Orig protein idgnl|cribi|Naga_100123g14.6339
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:335735..337012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100123g14gene5801Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24682.1cds5990Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6005rna6005-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6005 ID=rna6005|Name=rna6005|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
ATGAATGAGGACACGTCTGGTACAGGGGAGGCCTATGACCCTTTTGCCCA
ACCCTACCTCCCCGCCCTTCCCCCCGCCCACGACGCGCCGGACTCCCAAG
CACCCCCCGAGGCCCCCGTCTCCCTTGATCCCACCCGAGGAGATTCGTCG
AGCCCTCCACGAGCCAGTGGGGTGAGTGGCGCCACCATGGACCACAAAGG
GAAGCGTCTCTACGTGGGACAGTTGTCTTTTGACACGACGGACCGCGAGA
TTCGAGATATTTTTTCCAAGATCGGCTCTCTCCGCTACTGCAGGATCATG
ACAGACAAAGGAACGAACAAATCACGAGGCTTTGCCTTTGTGGGATTTTC
CACGCGCGCAGCGGCGCAGAAGGCCATGCAGATGTGGGACAATAGAGAGC
TGAATGGACGGCGGCTGAAAATCCGGCTTGCCGAGCCCCGCGCCGGAGAA
GGCGAGGGCGGCGCCGATGAAGGGGGGGTTGGACGGGAGGATCGAGCGGA
GGGAGGTGTGAGAGGAGCTAATGGTGACTCGCATCATAAGCAATTGCCTT
GCTCGTTGAGGATGGACCAGATAAATGATTTCGCGACAGCCCCTGCCTTG
CACTTCAATGTGATGCGGGCCGGCTGGGCGCCTTCGAACGTCAACAGATA
G
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protein sequence of rna6005

>rna6005-protein ID=rna6005-protein|Name=rna6005|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYV
ADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPS
NTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSR
TYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK
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mRNA from alignment at CM002467.1:335735..337012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6005 ID=rna6005|Name=rna6005|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at CM002467.1:335735..337012- (Nannochloropsis gaditana)
CCTGATTTCAAACAAATGAACGTGAAGCTGATGCTAAACCCAGAGACGCG
GGCAGGTCGGGGCCGAAGCACTCCACTCGACGCTAGCGAAGGCGGCGCCT
CACCGACACTGCAGACCGATGTATAACGCACTTTCTCGACTGCAATGGCA
TGTAGCTCGATGTCAGCCAAATCTGACTTCCGCTTTCTATTGCAGGCGAA
GCACTTTTCCCTTGGTAGCAAGCGCATGCACCATCTCTTCGCTCTGTCAA
CCTCCCTCCTGCTTCCCCCCGCGGCCCCTCACCAATCTCTACGTCTCCCG
CGCCTCTGAACGCCCAAGCTAGCTGAAGCCTGGCCGTGCTATCTAGTTTT
AGGGCGACATGGCCTGGCGAGGCGCTTTTCGGTCCTTCTTTAGCCGTGCC
CGGGCTCGATATATGCGAAGCTCAGCTGAGCTATTGGACGAGACGCGCTA
CAACGTCGTGGACCTCGTCAAGTTCAGCTGCACGCTCTACTGCTTGCACG
AGTATGTGGCCGACGTGACAGCCCTGGCTGGGCCGTCCATGCTCCCCACC
TTCAATGAGGCGGGGGACATCGTCGTGGTCGACTGCCTGCACGTAAAGCT
CGGAAGACCCCTCCAAAAAGGCGACATCGTCATCGCCCGCTCGCCCTCGA
ACCCGTCGAACACGGTCTGCAAGCGCGTCCTCGGCCTCCCTGGCGACCGT
ATCCTGATACAGCCACAGTATTGGTACCAGCAAGAACAGGTCTTGCAAGT
CCCGCCGGGGATGCTCTGGCTCGAGGGCGACAACCCCTTCAACTCCACCG
ACTCCCGCACCTACGGTCCCGTGCCCATGGCCCTGGTCAAAGGCCTCGTC
GCCTTCAAGCTGTACCCGCTCCATGAGTTCGGGCCTCTCCCACGGACATT
CCGGAGGCCGGGGGCGCGCTATCCTAAGCTTGATAGGGAGACGGGGATCC
GAAAATAGCTAGCTTCGAGGCGCACAAAAAGGGGGGGGGGGCTGTAGGTA
AAGGCGCACGTAATTCATATTAAATAACCATTTATGCATCGCTTTCAATG
CGTGTTTTTACGCGCCTCCCTCCATTTATTCCACATTGGGGCGCTGACCT
TACTGAAGCGGATCTCGCTCCCACCCTATCTGTTGACGTTCGAAGGCGCC
CAGCCGGCCCGCATCACATTGAAGTGCAAGGCAGGGGCTGTCGCGAAATC
ATTTATCTGGTCCATCCTCAACGAGCAAGGCAATTGCTTATGATGCGAGT
CTACTTTTGGGCCCTCCCGGCCGTGCTT
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Coding sequence (CDS) from alignment at CM002467.1:335735..337012-

>rna6005 ID=rna6005|Name=rna6005|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002467.1:335735..337012- (Nannochloropsis gaditana)
ATGGCCTGGCGAGGCGCTTTTCGGTCCTTCTTTAGCCGTGCCCGGGCTCG
ATATATGCGAAGCTCAGCTGAGCTATTGGACGAGACGCGCTACAACGTCG
TGGACCTCGTCAAGTTCAGCTGCACGCTCTACTGCTTGCACGAGTATGTG
GCCGACGTGACAGCCCTGGCTGGGCCGTCCATGCTCCCCACCTTCAATGA
GGCGGGGGACATCGTCGTGGTCGACTGCCTGCACGTAAAGCTCGGAAGAC
CCCTCCAAAAAGGCGACATCGTCATCGCCCGCTCGCCCTCGAACCCGTCG
AACACGGTCTGCAAGCGCGTCCTCGGCCTCCCTGGCGACCGTATCCTGAT
ACAGCCACAGTATTGGTACCAGCAAGAACAGGTCTTGCAAGTCCCGCCGG
GGATGCTCTGGCTCGAGGGCGACAACCCCTTCAACTCCACCGACTCCCGC
ACCTACGGTCCCGTGCCCATGGCCCTGGTCAAAGGCCTCGTCGCCTTCAA
GCTGTACCCGCTCCATGAGTTCGGGCCTCTCCCACGGACATTCCGGAGGC
CGGGGGCGCGCTATCCTAAGCTTGATAGGGAGACGGGGATCCGAAAATAG
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Synonyms
Publications