EWM24682.1, cds5990 (CDS) Nannochloropsis gaditana

Overview
NameEWM24682.1
Unique Namecds5990
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:336055..336654 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24682.1
Productmitochondrial inner membrane protease subunit 1
Orig transcript idgnl|cribi|Naga_100123g14.6339.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:336055..336654 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008233peptidase activity
GO:0008236serine-type peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0019538protein metabolic process
GO:0006627protein processing involved in protein targeting to mitochondrion
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015927Peptidase_S24_S26A/B/C
IPR019757Pept_S26A_signal_pept_1_Lys-AS
IPR026730Mitochondrial_IMP1
IPR019759Peptidase_S24_S26
IPR028360Peptidase_S24/S26_b-rbn
IPR000223Pept_S26A_signal_pept_1
Homology
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|553182131|ref|XP_005853683.1| (mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >gi|422295378|gb|EKU22677.1| mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >gi|585106206|gb|EWM24682.1| mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 412.92 bits (1060), Expect = 4.702e-146
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199
            MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK
Sbjct:    1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|971513741|dbj|GAQ84474.1| (Peptidase S24/S26A/S26B/S26C family protein [Klebsormidium nitens])

HSP 1 Score: 149.443 bits (376), Expect = 1.482e-42
Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 0
Query:   36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFG 175
            +V+F   +YC   YV DVT   GPSMLP+FN  G+I+ V+ +  +LGR L+ GD+V A+SP NP+  +CKR+LGL GDRI + P       +++ VP G +WL+GDN F S DSR YGPVP ALVKG V FK++P  +FG
Sbjct:   19 VVQFGSFIYCFGTYVMDVTTCVGPSMLPSFNAEGNIIFVEHISPRLGR-LKAGDVVTAQSPRNPNAVICKRILGLEGDRIRVPPTMPRDSIRLVTVPKGHVWLQGDNQFVSRDSREYGPVPAALVKGKVVFKIWPPSQFG 157          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|909127705|gb|KNE55016.1| (hypothetical protein AMAG_00953 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 142.51 bits (358), Expect = 1.573e-39
Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   28 ETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIR 198
            +  ++ +  VK    ++  + YVA+VT   GPSMLPTFN  GD V++D +  +LGR ++ GD+V+A S SNP   VCKR+ G+PGD I + P +     + L+VP G +WL GDN  NSTDSR YGPVP ALVKG V  +++      P P+  R  G    KL+R   I 
Sbjct:   12 QIAHHALFFVKLGAFIHVFNSYVAEVTMCMGPSMLPTFNMLGDFVLIDKISPRLGR-IELGDVVVATSLSNPDRVVCKRITGMPGDVICVDPSHDAASREYLKVPRGHVWLSGDNFSNSTDSRNYGPVPFALVKGKVLARIW------PDPKGIRN-GFEQAKLERAAAIH 174          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|255081352|ref|XP_002507898.1| (predicted protein [Micromonas commoda] >gi|226523174|gb|ACO69156.1| predicted protein [Micromonas commoda])

HSP 1 Score: 141.354 bits (355), Expect = 1.782e-39
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 0
Query:   39 FSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPR 179
              C +  +H Y   VT   GPSMLPTFN +GD V+V+ L V +   +++GDIVIA+SP+NP +TVCKRVLG  GD I +     +   Q ++VPPG +WL+GDN  NSTDSR YGPVP  +++G V  K++PL E G + R
Sbjct:    1 MGCLVNVIHNYGVHVTMCLGPSMLPTFNRSGDFVLVEQLSV-MTDNIRRGDIVIAKSPTNPRHTVCKRVLGRGGDVIAVPKAGSFGGTQRVEVPPGHIWLQGDNKDNSTDSRDYGPVPFGMLRGKVFLKVWPLSELGYVAR 140          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|909129660|gb|KNE56681.1| (hypothetical protein AMAG_02464 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 139.428 bits (350), Expect = 2.637e-38
Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 0
Query:   31 YNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170
            ++ +  VK    ++  + YVA+VT   GPSMLPTFN  GD V++D +  + GR ++ GD+V+A S SNP   VCKR+ G+PGD I + P       + L+VP G +WL GDN  NSTDSR YGPVP+ALVKG V  +++P
Sbjct:   15 HHALFFVKLGAFIHVFNSYVAEVTMCMGPSMLPTFNMLGDFVLIDKISPRFGR-IELGDVVVATSLSNPDRVVCKRITGMPGDVICVDPSLDATSREYLKVPRGHVWLSGDNFSNSTDSRNYGPVPLALVKGKVLARIWP 153          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|595443157|gb|EXX54857.1| (Imp1p [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-38
Identity = 69/134 (51.49%), Postives = 94/134 (70.15%), Query Frame = 0
Query:   37 VKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170
            +KF+C ++ + E+V +VT   GPSMLPTFN  GDIVV++    KL R L+ GD+V+  SP+NP   VCKR+LG+PGDRI I P       + + VP G +WL+GDN  NSTDSR+YGPVP AL++G V  +++P
Sbjct:   19 IKFACFVHLIGEHVTEVTMCIGPSMLPTFNMIGDIVVLEHFSPKLKR-LEIGDVVVCISPTNPWRAVCKRILGMPGDRICIDPTV--INRKYIIVPRGHVWLQGDNMSNSTDSRSYGPVPYALIRGRVFARIWP 149          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|551650228|ref|XP_005827897.1| (hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712] >gi|428172005|gb|EKX40917.1| hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712])

HSP 1 Score: 137.117 bits (344), Expect = 1.067e-37
Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 0
Query:   36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGD---RILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFG 175
            L++F C L+C HE++ DVT   GPSM+PTFN  GD+V+V+    +  + L  GD+V+A+SP+NP  TVCKR+ G+  +   R  I P        V+QVP G +WL+GDN  NSTDSR YGPVP+AL++G V +K++PL E G
Sbjct:   11 LLQFGCLLHCFHEHILDVTICIGPSMIPTFNLEGDVVLVEFWTTRRQK-LVNGDVVVAKSPTNPKQTVCKRICGMRREGEKRPDINPH------GVVQVPDGHVWLQGDNLPNSTDSRHYGPVPLALIRGKVFYKIWPLGEAG 146          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|857970303|emb|CEP03326.1| (hypothetical protein PBRA_003086 [Plasmodiophora brassicae])

HSP 1 Score: 136.732 bits (343), Expect = 2.366e-37
Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   38 KFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILI--QPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPG 185
            K     Y  + +VA ++A +GPSMLPT N  GD+V+ D L  K GR L+KGDIV+  SP +    + KR++G+PG+ +    +  +W      + VPPG ++L+GDNP +S DSR YGPVP+ALVKG V FKL+P +E GP  RT    G
Sbjct:   17 KAGVAFYAFNNHVAFLSASSGPSMLPTLNLRGDVVLCDALSPKFGR-LRKGDIVVCGSPRSMDKIIVKRIVGMPGETVSYTRRGGFWEGAPVTVHVPPGHIFLQGDNPADSVDSRDYGPVPLALVKGRVMFKLWPFYEMGPFRRTLDATG 165          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|299117054|emb|CBN73825.1| (Imp1 homolog, Inner Membrane Peptidase complex subunit 1 [Ectocarpus siliculosus])

HSP 1 Score: 136.732 bits (343), Expect = 2.780e-37
Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 0
Query:   57 AGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRET 195
            +GPSM+P FN++GD++  +    K GR L +GD+VIA  P NP   VCKR++GLPG+ ++++ + W+       VP G +WLEGDNP NS+DSRTYGP+P+A+V+G V FK +P  E G + R  R P A    L RET
Sbjct:   13 SGPSMIPAFNQSGDVIFAEMFSAKTGR-LDRGDVVIAIPPQNPKLRVCKRIIGLPGETVIVRSRSWFDDRPEF-VPEGHVWLEGDNPSNSSDSRTYGPIPLAMVRGRVFFKAWPPSEIGRVAR--RVPEAASAVLPRET 147          
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|676396947|ref|XP_009041751.1| (hypothetical protein AURANDRAFT_16372, partial [Aureococcus anophagefferens] >gi|323447622|gb|EGB03536.1| hypothetical protein AURANDRAFT_16372, partial [Aureococcus anophagefferens])

HSP 1 Score: 134.806 bits (338), Expect = 3.328e-37
Identity = 71/135 (52.59%), Postives = 88/135 (65.19%), Query Frame = 0
Query:   36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170
            LVKF   L+CLHEYV +V+   GPSMLPTFN  GDIV++D L  +LGR +  GD+VI +SP++P  TVCKRV  L G R+   P           VP G  WL GDN  NSTDSR YGPVP A++KG V  +++P
Sbjct:    1 LVKFGAFLHCLHEYVVEVSMCCGPSMLPTFNATGDIVLMDRLSPRLGR-VGVGDVVICKSPTHPHQTVCKRVAALGGGRVPSFPSA--------TVPEGHAWLLGDNAENSTDSRVYGPVPTAMIKGRVVCRIFP 126          
The following BLAST results are available for this feature:
BLAST of EWM24682.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182131|ref|XP_005853683.1|4.702e-146100.00mitochondrial inner membrane protease subunit 1 [N... [more]
gi|971513741|dbj|GAQ84474.1|1.482e-4251.43Peptidase S24/S26A/S26B/S26C family protein [Klebs... [more]
gi|909127705|gb|KNE55016.1|1.573e-3943.86hypothetical protein AMAG_00953 [Allomyces macrogy... [more]
gi|255081352|ref|XP_002507898.1|1.782e-3949.65predicted protein [Micromonas commoda] >gi|2265231... [more]
gi|909129660|gb|KNE56681.1|2.637e-3847.86hypothetical protein AMAG_02464 [Allomyces macrogy... [more]
gi|595443157|gb|EXX54857.1|5.194e-3851.49Imp1p [Rhizophagus irregularis DAOM 197198w][more]
gi|551650228|ref|XP_005827897.1|1.067e-3748.95hypothetical protein GUITHDRAFT_88558 [Guillardia ... [more]
gi|857970303|emb|CEP03326.1|2.366e-3746.00hypothetical protein PBRA_003086 [Plasmodiophora b... [more]
gi|299117054|emb|CBN73825.1|2.780e-3748.20Imp1 homolog, Inner Membrane Peptidase complex sub... [more]
gi|676396947|ref|XP_009041751.1|3.328e-3752.59hypothetical protein AURANDRAFT_16372, partial [Au... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6005rna6005Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications