EWM24682.1, cds5990 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|553182131|ref|XP_005853683.1| (mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >gi|422295378|gb|EKU22677.1| mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >gi|585106206|gb|EWM24682.1| mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana]) HSP 1 Score: 412.92 bits (1060), Expect = 4.702e-146 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 Query: 1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK Sbjct: 1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|971513741|dbj|GAQ84474.1| (Peptidase S24/S26A/S26B/S26C family protein [Klebsormidium nitens]) HSP 1 Score: 149.443 bits (376), Expect = 1.482e-42 Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 0 Query: 36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFG 175 +V+F +YC YV DVT GPSMLP+FN G+I+ V+ + +LGR L+ GD+V A+SP NP+ +CKR+LGL GDRI + P +++ VP G +WL+GDN F S DSR YGPVP ALVKG V FK++P +FG Sbjct: 19 VVQFGSFIYCFGTYVMDVTTCVGPSMLPSFNAEGNIIFVEHISPRLGR-LKAGDVVTAQSPRNPNAVICKRILGLEGDRIRVPPTMPRDSIRLVTVPKGHVWLQGDNQFVSRDSREYGPVPAALVKGKVVFKIWPPSQFG 157
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|909127705|gb|KNE55016.1| (hypothetical protein AMAG_00953 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 142.51 bits (358), Expect = 1.573e-39 Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 0 Query: 28 ETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIR 198 + ++ + VK ++ + YVA+VT GPSMLPTFN GD V++D + +LGR ++ GD+V+A S SNP VCKR+ G+PGD I + P + + L+VP G +WL GDN NSTDSR YGPVP ALVKG V +++ P P+ R G KL+R I Sbjct: 12 QIAHHALFFVKLGAFIHVFNSYVAEVTMCMGPSMLPTFNMLGDFVLIDKISPRLGR-IELGDVVVATSLSNPDRVVCKRITGMPGDVICVDPSHDAASREYLKVPRGHVWLSGDNFSNSTDSRNYGPVPFALVKGKVLARIW------PDPKGIRN-GFEQAKLERAAAIH 174
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|255081352|ref|XP_002507898.1| (predicted protein [Micromonas commoda] >gi|226523174|gb|ACO69156.1| predicted protein [Micromonas commoda]) HSP 1 Score: 141.354 bits (355), Expect = 1.782e-39 Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 0 Query: 39 FSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPR 179 C + +H Y VT GPSMLPTFN +GD V+V+ L V + +++GDIVIA+SP+NP +TVCKRVLG GD I + + Q ++VPPG +WL+GDN NSTDSR YGPVP +++G V K++PL E G + R Sbjct: 1 MGCLVNVIHNYGVHVTMCLGPSMLPTFNRSGDFVLVEQLSV-MTDNIRRGDIVIAKSPTNPRHTVCKRVLGRGGDVIAVPKAGSFGGTQRVEVPPGHIWLQGDNKDNSTDSRDYGPVPFGMLRGKVFLKVWPLSELGYVAR 140
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|909129660|gb|KNE56681.1| (hypothetical protein AMAG_02464 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 139.428 bits (350), Expect = 2.637e-38 Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 0 Query: 31 YNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170 ++ + VK ++ + YVA+VT GPSMLPTFN GD V++D + + GR ++ GD+V+A S SNP VCKR+ G+PGD I + P + L+VP G +WL GDN NSTDSR YGPVP+ALVKG V +++P Sbjct: 15 HHALFFVKLGAFIHVFNSYVAEVTMCMGPSMLPTFNMLGDFVLIDKISPRFGR-IELGDVVVATSLSNPDRVVCKRITGMPGDVICVDPSLDATSREYLKVPRGHVWLSGDNFSNSTDSRNYGPVPLALVKGKVLARIWP 153
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|595443157|gb|EXX54857.1| (Imp1p [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 137.887 bits (346), Expect = 5.194e-38 Identity = 69/134 (51.49%), Postives = 94/134 (70.15%), Query Frame = 0 Query: 37 VKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170 +KF+C ++ + E+V +VT GPSMLPTFN GDIVV++ KL R L+ GD+V+ SP+NP VCKR+LG+PGDRI I P + + VP G +WL+GDN NSTDSR+YGPVP AL++G V +++P Sbjct: 19 IKFACFVHLIGEHVTEVTMCIGPSMLPTFNMIGDIVVLEHFSPKLKR-LEIGDVVVCISPTNPWRAVCKRILGMPGDRICIDPTV--INRKYIIVPRGHVWLQGDNMSNSTDSRSYGPVPYALIRGRVFARIWP 149
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|551650228|ref|XP_005827897.1| (hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712] >gi|428172005|gb|EKX40917.1| hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712]) HSP 1 Score: 137.117 bits (344), Expect = 1.067e-37 Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 0 Query: 36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGD---RILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFG 175 L++F C L+C HE++ DVT GPSM+PTFN GD+V+V+ + + L GD+V+A+SP+NP TVCKR+ G+ + R I P V+QVP G +WL+GDN NSTDSR YGPVP+AL++G V +K++PL E G Sbjct: 11 LLQFGCLLHCFHEHILDVTICIGPSMIPTFNLEGDVVLVEFWTTRRQK-LVNGDVVVAKSPTNPKQTVCKRICGMRREGEKRPDINPH------GVVQVPDGHVWLQGDNLPNSTDSRHYGPVPLALIRGKVFYKIWPLGEAG 146
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|857970303|emb|CEP03326.1| (hypothetical protein PBRA_003086 [Plasmodiophora brassicae]) HSP 1 Score: 136.732 bits (343), Expect = 2.366e-37 Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 0 Query: 38 KFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILI--QPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPG 185 K Y + +VA ++A +GPSMLPT N GD+V+ D L K GR L+KGDIV+ SP + + KR++G+PG+ + + +W + VPPG ++L+GDNP +S DSR YGPVP+ALVKG V FKL+P +E GP RT G Sbjct: 17 KAGVAFYAFNNHVAFLSASSGPSMLPTLNLRGDVVLCDALSPKFGR-LRKGDIVVCGSPRSMDKIIVKRIVGMPGETVSYTRRGGFWEGAPVTVHVPPGHIFLQGDNPADSVDSRDYGPVPLALVKGRVMFKLWPFYEMGPFRRTLDATG 165
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|299117054|emb|CBN73825.1| (Imp1 homolog, Inner Membrane Peptidase complex subunit 1 [Ectocarpus siliculosus]) HSP 1 Score: 136.732 bits (343), Expect = 2.780e-37 Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 0 Query: 57 AGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRET 195 +GPSM+P FN++GD++ + K GR L +GD+VIA P NP VCKR++GLPG+ ++++ + W+ VP G +WLEGDNP NS+DSRTYGP+P+A+V+G V FK +P E G + R R P A L RET Sbjct: 13 SGPSMIPAFNQSGDVIFAEMFSAKTGR-LDRGDVVIAIPPQNPKLRVCKRIIGLPGETVIVRSRSWFDDRPEF-VPEGHVWLEGDNPSNSSDSRTYGPIPLAMVRGRVFFKAWPPSEIGRVAR--RVPEAASAVLPRET 147
BLAST of EWM24682.1 vs. NCBI_GenBank
Match: gi|676396947|ref|XP_009041751.1| (hypothetical protein AURANDRAFT_16372, partial [Aureococcus anophagefferens] >gi|323447622|gb|EGB03536.1| hypothetical protein AURANDRAFT_16372, partial [Aureococcus anophagefferens]) HSP 1 Score: 134.806 bits (338), Expect = 3.328e-37 Identity = 71/135 (52.59%), Postives = 88/135 (65.19%), Query Frame = 0 Query: 36 LVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYP 170 LVKF L+CLHEYV +V+ GPSMLPTFN GDIV++D L +LGR + GD+VI +SP++P TVCKRV L G R+ P VP G WL GDN NSTDSR YGPVP A++KG V +++P Sbjct: 1 LVKFGAFLHCLHEYVVEVSMCCGPSMLPTFNATGDIVLMDRLSPRLGR-VGVGDVVICKSPTHPHQTVCKRVAALGGGRVPSFPSA--------TVPEGHAWLLGDNAENSTDSRVYGPVPTAMIKGRVVCRIFP 126 The following BLAST results are available for this feature:
BLAST of EWM24682.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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