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Properties
| Property Name | Value |
|---|
| Product | Ribonuclease H2, subunit C |
| Orig transcript id | gnl|cribi|Naga_100123g16.6337.mrna |
| Orig protein id | gnl|cribi|Naga_100123g16.6337 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:332038..333411 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6003 ID=rna6003|Name=rna6003|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp
ATGCCTCACAAGGATCACCCATCTGGGTTTCGGGCGCGGAACCTGAAGCC
GCCCAGCAGGTTCTTCCTTCCAACCCTCCTCCCATCTCCATCTAAGTCCA
CGTTAATATGGGGAAACCAACCAAGGGTCCCAAGGGACCAGAAGTTGGCC
TCGTATTCCCTACGGATAAAAAGGGCGGCCGGCTCTACGTTCGGCAACAA
AGGCGCCTGGGCTGCGGCTGTCGGGGCAGTGGACAAAGCAGAAGGACTGA
AAATCGAGAAAGAGAAACAATGGCGACAGAAATACGCCAAGTACATCGTG
CGCCAAGTTCAAGTCGGGCTGAAGTCTCCCAAAAATGCTGTGAGCGTTGC
CCAGGGCGGCCTGGAGTACTGCTACCAGAACTTCGAGTTCATCCGTGATG
GCAAGACCTACAAGCTGGGCGAGGCCATGGAGAAATTCGGGGGCTCGCAC
TCCTACGAGACGGGTGTGATCAAGGGCGAGGGCAAGCTCCCCAAGTTCGG
GCCCGTCTGCCAGGTGCCCTACGGGAAGAAGGTGCTGGAGGGAGAGGCTC
TGCGCGCCCAGTTTGAGCAATGGGCGCGGTACGGGACCGTCGAGCCCTCG
GCCCGGGACGCCATCAGCTACCTGATCGACAATCCCAAGGTCCTAGACCT
CTCAGACAAGTACTTCGTCTTGCTGGGGGCGGGCTCGGCCATGGGGCCCT
TCCTGACCCTGCTGGCCCTGGGCGCGAACATCATCGCCATCGACCTCGAC
AGACAGGGCATCTGGGAGCGGCTCATCCGGGAGACGCGCAAATCGCCGGG
CACGCTGATCTTCCCCTTGAAGAAGAAACAGTCGACGCTCAAGACGGACC
CGGAGGTGGCGGCCCAGGCGGGCGGGAACCTCTTCACCGATACGCCCGAG
CTCCGCGCCTGGCTGATGGGGGTGGAGACGGGCAAGGACCTGGTAGTGGG
TGCCTACGCCTACCTGGACGGGGAGCTGCACGTGAAGGTCTCCCTGGCCA
TGGACGCCATCATCCGGGACCTGACGAGGCTCCGGAAGGCCACGCCCGCC
TATCTGTGCACGCCCACTGACGTCCACGTCATCTCCAAGGAGGCGCACGA
CGCCGCCGCGGCCCAGCACTGTGAGCTTTCCCTGGTGAACCTGGTCTGCA
AGCTCTCCCTCTTCAACCTTCCGGGCTCCGGGTACCTTGTCAAGAATGCC
CTGCCCCCCGTGCGAGCGGAGGACGGGGAGGAGATCTATTTCGTGGACGG
CATTGTGGGCAGACAGGGTCCCAATTACGCCCTGGCCAAGCGCATCCAGC
ACTGGCGGGCCGTGGTGGCGCGGGAAGTGGACAAAGTGAACGTGTCTTCC
AACATCGCGCCCTCAACGGCCACGGTTTCCGTAACGAGCAACAAGCTCTT
CGCTCTCGCCTACAAGGGCTTCCACTTCTTCAAACCCCTGGAGGTGTTCC
AACAGGAGACCTCCAACGCCGTCATGGCGGCCATGCTTATTCATGACATC
CGCAATCCGAACGTGCCCTCGAACCCTAAGAACAAAATCCGGAACCCCCT
CGAACTTTTCACCTACGGGTCTCTGCACGGGGGAATCTGGCGCATGGCGT
ACAAAATTGACTCCATCGGGGAGCCCGCGGCGTTTTTGTATTTGTTCACA
ACGCCGTTGGGCATGTTGGTCCTGGTAGCCTTCTACGCGGCGCGTTGTCA
TCTGTGCGAGGCTGTCGAGGTTGGGATAACGTCTTTCGCTCTGATTCCCA
TGCGGTTTACGCTCGATATTTACATTGGAGGATCATGTTTGGAGTATCAA
CCTTTACAATGA back to topprotein sequence of rna6003 >rna6003-protein ID=rna6003-protein|Name=rna6003|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MRDETNQYGDGSGVVGPQRRDPVLVASVRDPQPNARIHAMPCSISYDGPA
AVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLC
VEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALN
RYEMDSGGLAKLSPCDPQRLELILIFPLSLRSWKWEGMVRTYGALSTSVP
CTYPVRPMGVTNKEALGSGRRHDMCRDSDGLRWRERCFSLPFISDASTVV
LHIR back to topmRNA from alignment at CM002467.1:332038..333411- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6003 ID=rna6003|Name=rna6003|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp|location=Sequence derived from alignment at CM002467.1:332038..333411- (Nannochloropsis gaditana)
ATGAGGGACGAGACAAATCAGTACGGCGATGGCAGCGGCGTTGTTGGACC
TCAAAGGCGAGACCCAGTGCTGGTGGCCTCCGTCCGAGACCCCCAGCCAA
ATGCTCGGATCCACGCCATGCCATGCTCCATAAGCTACGACGGCCCAGCC
GCAGTCAATACCTACTTTATGCCTCGCGATACCACAGCGTGCGAAACAGG
CATGAGCGCTGCGAATAATAAGGCAATTTCGAGGAACGGAGAAGAGGGTG
CCGAAGGTGAGGAGGTCACTAGCTGTGACTGAAACTTCAGAGAAAAAGGA
ATATCTGAGATGTGCTTACCTTACCGATGTTACAAGTCATTCTTGACGAA
TCTTGGCATACGCTTTGTCTTTCGTTGTACCAGGGTTTAGCAAACGTGCC
AAGCTAGGTAAAGAAGAGCTGCTTTGTGTGGAAGGTCGTCTGTACGAAGC
CCAGTTCCGAGGTCGCTTTTTGAGAGGTAAGGAGGCCGCATGATTGGTAT
AATATACAAAATTCACGGAGAGGGTAGCTCAGAGGCATTTAGGAGAAGGC
TTGGCGGCAATATGGCGTCCTTCTGAGACACAAAACTTCGGGACTGAACC
CACTTCCTGGCCTACAGGCATTGGGGCGGCCTGTCCCCAGGGCATGCGAG
GTTTCGTAGTGCGCGAACGCGTCCTTCCCCTTGAGTTGAAGGAGGTCGCT
CCATCTGCAGCTTTGAATAGGTATGAAATGGACAGTCTAGATCCTTACGG
GAAGGGAGGAGGGAAGCGCCAGGGCCATTACGGTCAACAAGAGCGTTGTT
ACCAGATCAGGCGCTCTTCGCTGGTAAGCTCTTATCCTCATCTTGCTAAC
ATTTCAATGTACTCGCAAATATTAGGTACTGGTCGATCGAATCCGAATTT
CGAGAGCTGACGTTGTGGCGCCACGACTTCGCCCCCCCCCCGGACCACTG
CCTCCAGCAGGTGGAGGACTGGCGAAGCTTAGCCCATGCGGTGCGTGGAA
GAGGGGAACGACGGGGAGAGAGGATAGAAGGGGAGAGCGAATGTCGTAAG
CCCCTCAGGGGTCAGCATGGCTTCATAAACTTAAGTGAGTATAACACATG
CACAGATCCACAACGACTCGAATTGATCTTAATTTTTCCCCTCTCGCTGA
GGTCCTGGAAATGGGAAGGGATGGTACGAACATATGGAGCCTTATCAACG
AGTGTACCGTGTACATATCCCGTGCGTCCCATGGGAGTCACCAATAAGGA
GGCTCTCGGTTCCGGTCGAAGGCATGATATGTGTCGTGATTCTGACGGCC
TCCGGTGGCGAGAACGATGTTTCTCACTGCCCTTCATTTCCGACGCTTCA
ACTGTCGTGTTACACATTCGTTGA back to topCoding sequence (CDS) from alignment at CM002467.1:332038..333411- >rna6003 ID=rna6003|Name=rna6003|organism=Nannochloropsis gaditana|type=CDS|length=3825bp|location=Sequence derived from alignment at CM002467.1:332038..333411- (Nannochloropsis gaditana)
ATCCACAACGACTCGAATTGATCTTAATTTTTCCCCTCTCGCTGAGGTCC
TGGAAATGGGAAGGGATGGTACGAACATATGGAGCCTTATCAACGAGTGT
ACCGTGTACATATCCCGTGCGTCCCATGGGAGTCACCAATAAGGAGGCTC
TCGGTTCCGGTCGAAGGCATGATATGTGTCGTGATTCTGACGGCCTCCGG
TGGCGAGAACGATGTTTCTCACTGCCCTTCATTTCCGACGCTTCAACTGT
CGTGTTACACATTCGTTGAGTGGAGGACTGGCGAAGCTTAGCCCATGCGG
CATTGGGGCGGCCTGTCCCCAGGGCATGCGAGGTTTCGTAGTGCGCGAAC
GCGTCCTTCCCCTTGAGTTGAAGGAGGTCGCTCCATCTGCAGCTTTGAAT
AGGTATGAAATGGACAGGTTTAGCAAACGTGCCAAGCTAGGTAAAGAAGA
GCTGCTTTGTGTGGAAGGTCGTCTGTACGAAGCCCAGTTCCGAGGTCGCT
TTTTGAGAGATGAGGGACGAGACAAATCAGTACGGCGATGGCAGCGGCGT
TGTTGGACCTCAAAGGCGAGACCCAGTGCTGGTGGCCTCCGTCCGAGACC
CCCAGCCAAATGCTCGGATCCACGCCATGCCATGCTCCATAAGCTACGAC
GGCCCAGCCGCAGTCAATACCTACTTTATGCCTCGCGATACCACAGCGTG
CGAAACAGGCATGAGCGCTGCGAATAATAAGGCAATTTCGAGGAACGGAG
AAGAGGGTGCCGAAGATCCACAACGACTCGAATTGATCTTAATTTTTCCC
CTCTCGCTGAGGTCCTGGAAATGGGAAGGGATGGTACGAACATATGGAGC
CTTATCAACGAGTGTACCGTGTACATATCCCGTGCGTCCCATGGGAGTCA
CCAATAAGGAGGCTCTCGGTTCCGGTCGAAGGCATGATATGTGTCGTGAT
TCTGACGGCCTCCGGTGGCGAGAACGATGTTTCTCACTGCCCTTCATTTC
CGACGCTTCAACTGTCGTGTTACACATTCGTTGAGTGGAGGACTGGCGAA
GCTTAGCCCATGCGGCATTGGGGCGGCCTGTCCCCAGGGCATGCGAGGTT
TCGTAGTGCGCGAACGCGTCCTTCCCCTTGAGTTGAAGGAGGTCGCTCCA
TCTGCAGCTTTGAATAGGTATGAAATGGACAGGTTTAGCAAACGTGCCAA
GCTAGGTAAAGAAGAGCTGCTTTGTGTGGAAGGTCGTCTGTACGAAGCCC
AGTTCCGAGGTCGCTTTTTGAGAGATGAGGGACGAGACAAATCAGTACGG
CGATGGCAGCGGCGTTGTTGGACCTCAAAGGCGAGACCCAGTGCTGGTGG
CCTCCGTCCGAGACCCCCAGCCAAATGCTCGGATCCACGCCATGCCATGC
TCCATAAGCTACGACGGCCCAGCCGCAGTCAATACCTACTTTATGCCTCG
CGATACCACAGCGTGCGAAACAGGCATGAGCGCTGCGAATAATAAGGCAA
TTTCGAGGAACGGAGAAGAGGGTGCCGAAGATCCACAACGACTCGAATTG
ATCTTAATTTTTCCCCTCTCGCTGAGGTCCTGGAAATGGGAAGGGATGGT
ACGAACATATGGAGCCTTATCAACGAGTGTACCGTGTACATATCCCGTGC
GTCCCATGGGAGTCACCAATAAGGAGGCTCTCGGTTCCGGTCGAAGGCAT
GATATGTGTCGTGATTCTGACGGCCTCCGGTGGCGAGAACGATGTTTCTC
ACTGCCCTTCATTTCCGACGCTTCAACTGTCGTGTTACACATTCGTTGAG
TGGAGGACTGGCGAAGCTTAGCCCATGCGGCATTGGGGCGGCCTGTCCCC
AGGGCATGCGAGGTTTCGTAGTGCGCGAACGCGTCCTTCCCCTTGAGTTG
AAGGAGGTCGCTCCATCTGCAGCTTTGAATAGGTATGAAATGGACAGGTT
TAGCAAACGTGCCAAGCTAGGTAAAGAAGAGCTGCTTTGTGTGGAAGGTC
GTCTGTACGAAGCCCAGTTCCGAGGTCGCTTTTTGAGAGATGAGGGACGA
GACAAATCAGTACGGCGATGGCAGCGGCGTTGTTGGACCTCAAAGGCGAG
ACCCAGTGCTGGTGGCCTCCGTCCGAGACCCCCAGCCAAATGCTCGGATC
CACGCCATGCCATGCTCCATAAGCTACGACGGCCCAGCCGCAGTCAATAC
CTACTTTATGCCTCGCGATACCACAGCGTGCGAAACAGGCATGAGCGCTG
CGAATAATAAGGCAATTTCGAGGAACGGAGAAGAGGGTGCCGAAGATCCA
CAACGACTCGAATTGATCTTAATTTTTCCCCTCTCGCTGAGGTCCTGGAA
ATGGGAAGGGATGGTACGAACATATGGAGCCTTATCAACGAGTGTACCGT
GTACATATCCCGTGCGTCCCATGGGAGTCACCAATAAGGAGGCTCTCGGT
TCCGGTCGAAGGCATGATATGTGTCGTGATTCTGACGGCCTCCGGTGGCG
AGAACGATGTTTCTCACTGCCCTTCATTTCCGACGCTTCAACTGTCGTGT
TACACATTCGTTGAGTGGAGGACTGGCGAAGCTTAGCCCATGCGGCATTG
GGGCGGCCTGTCCCCAGGGCATGCGAGGTTTCGTAGTGCGCGAACGCGTC
CTTCCCCTTGAGTTGAAGGAGGTCGCTCCATCTGCAGCTTTGAATAGGTA
TGAAATGGACAGGTTTAGCAAACGTGCCAAGCTAGGTAAAGAAGAGCTGC
TTTGTGTGGAAGGTCGTCTGTACGAAGCCCAGTTCCGAGGTCGCTTTTTG
AGAGATGAGGGACGAGACAAATCAGTACGGCGATGGCAGCGGCGTTGTTG
GACCTCAAAGGCGAGACCCAGTGCTGGTGGCCTCCGTCCGAGACCCCCAG
CCAAATGCTCGGATCCACGCCATGCCATGCTCCATAAGCTACGACGGCCC
AGCCGCAGTCAATACCTACTTTATGCCTCGCGATACCACAGCGTGCGAAA
CAGGCATGAGCGCTGCGAATAATAAGGCAATTTCGAGGAACGGAGAAGAG
GGTGCCGAAGATCCACAACGACTCGAATTGATCTTAATTTTTCCCCTCTC
GCTGAGGTCCTGGAAATGGGAAGGGATGGTACGAACATATGGAGCCTTAT
CAACGAGTGTACCGTGTACATATCCCGTGCGTCCCATGGGAGTCACCAAT
AAGGAGGCTCTCGGTTCCGGTCGAAGGCATGATATGTGTCGTGATTCTGA
CGGCCTCCGGTGGCGAGAACGATGTTTCTCACTGCCCTTCATTTCCGACG
CTTCAACTGTCGTGTTACACATTCGTTGAGTGGAGGACTGGCGAAGCTTA
GCCCATGCGGCATTGGGGCGGCCTGTCCCCAGGGCATGCGAGGTTTCGTA
GTGCGCGAACGCGTCCTTCCCCTTGAGTTGAAGGAGGTCGCTCCATCTGC
AGCTTTGAATAGGTATGAAATGGACAGGTTTAGCAAACGTGCCAAGCTAG
GTAAAGAAGAGCTGCTTTGTGTGGAAGGTCGTCTGTACGAAGCCCAGTTC
CGAGGTCGCTTTTTGAGAGATGAGGGACGAGACAAATCAGTACGGCGATG
GCAGCGGCGTTGTTGGACCTCAAAGGCGAGACCCAGTGCTGGTGGCCTCC
GTCCGAGACCCCCAGCCAAATGCTCGGATCCACGCCATGCCATGCTCCAT
AAGCTACGACGGCCCAGCCGCAGTCAATACCTACTTTATGCCTCGCGATA
CCACAGCGTGCGAAACAGGCATGAGCGCTGCGAATAATAAGGCAATTTCG
AGGAACGGAGAAGAGGGTGCCGAAG back to top
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