EWM24680.1, cds5988 (CDS) Nannochloropsis gaditana

Overview
NameEWM24680.1
Unique Namecds5988
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:333156..333411 -
Alignment locationCM002467.1:332936..333028 -
Alignment locationCM002467.1:332678..332794 -
Alignment locationCM002467.1:332422..332451 -
Alignment locationCM002467.1:332038..332306 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24680.1
ProductRibonuclease H2, subunit C
Orig transcript idgnl|cribi|Naga_100123g16.6337.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:333156..333411 -
CM002467.1supercontigCM002467.1:332936..333028 -
CM002467.1supercontigCM002467.1:332678..332794 -
CM002467.1supercontigCM002467.1:332422..332451 -
CM002467.1supercontigCM002467.1:332038..332306 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013924RNase_H2_suC
Homology
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BLAST of EWM24680.1 vs. NCBI_GenBank
Match: gi|585106204|gb|EWM24680.1| (Ribonuclease H2, subunit C [Nannochloropsis gaditana])

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 
Query:    1 MRDETNQYGDGSGVVGPQRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRYEMDSGGLAKLSPCDPQRLELILIFPLSLRSWKWEGMVRTYGALSTSVPCTYPVRPMGVTNKEALGSGRRHDMCRDSDGLRWRERCFSLPFISDASTVVLHIR 254
            MRDETNQYGDGSGVVGPQRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRYEMDSGGLAKLSPCDPQRLELILIFPLSLRSWKWEGMVRTYGALSTSVPCTYPVRPMGVTNKEALGSGRRHDMCRDSDGLRWRERCFSLPFISDASTVVLHIR
Sbjct:    1 MRDETNQYGDGSGVVGPQRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRYEMDSGGLAKLSPCDPQRLELILIFPLSLRSWKWEGMVRTYGALSTSVPCTYPVRPMGVTNKEALGSGRRHDMCRDSDGLRWRERCFSLPFISDASTVVLHIR 254
The following BLAST results are available for this feature:
BLAST of EWM24680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106204|gb|EWM24680.1|0.000e+0100.00Ribonuclease H2, subunit C [Nannochloropsis gadita... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6003rna6003Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications