rna6000, rna6000 (mRNA) Nannochloropsis gaditana

Overview
Namerna6000
Unique Namerna6000
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1118
Alignment locationCM002467.1:320828..321662 -

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Properties
Property NameValue
Productpre-mrna-splicing factor
Orig transcript idgnl|cribi|Naga_100839g2.440.mrna
Orig protein idgnl|cribi|Naga_100839g2.440
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:320828..321662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100839g2gene5796Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6000rna6000-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24688.1cds5985Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6000 ID=rna6000|Name=rna6000|organism=Nannochloropsis gaditana|type=mRNA|length=1118bp
AATTCCCCTTCCTGTCTCATTCGCTGTCGCGAGCGAGGATTCCAACAAAA
CCCGCCAAGCTCTGTCATCGCAACGCCGGCATCTCTCTCATCCGCGCGCA
CAACTCTGGCTCAATAGAATACACACAGGGAGAAGAGGCGACATGATGAA
TGCGGCAAGGATGGCGACTAAAAGAAGGTTGCTGGCATTTCCTCCCGTTG
CACCCAAGGCGCTTGCGGCGGCTGTTGATGGTGCATTGAATACAGCGAGA
AATTCCGGGAAGCTGAGCAGCTTTCCTCGTCCCTCAAAACGTGTGCCAAG
ACAGCACTACAACGAGGCGTGCACACGTGCATTTCACGGTTCGGTGTCTC
TCCGCATGGCGGAGGTGGTGATGACGGTACCGAGCATGGGCGACTCAATT
ACTGAAGGGACCATAAGGTCGTGGGAGAAAAAAGTCGGAGAAGCCGTGGC
CTTAGACGACGTGGTGGTGGTAATCGAGACGGACAAAGTCTCGGTGGACA
TTCGGGCTTCCAACTCGGGCGTTCTGGTCGAGCAATACGCGGCTGTCGAC
GATAACGTGGAGGTCGGTGCCAAACTCTTGAAGATCGATACGCAGGCCAC
CGCTTCTGCTCCCAGCTCCGCTTCCGCCCCCAGCCCGCCGGCCCCTCCCA
CGCCCGGGAACCCCCCCCCCCTTCCAACGAGGCAAACCCCGCCCCTCCCC
CCACAGACGCCCCCCCCGCCCACCGCACCCCTCTCATCAAGTTTCTGGGC
AAGCGCTCCTTGATGAGGAAGCAGGACAGCAGCGCACAGGCCGCCGCGCC
TCCTCCGCCCGCCAGGTCCCCCTCTCTCCCCGCACGGCATGAGGACTCGA
GGAGCACGCCGGGTGTCAAGACCTTCATAGAGCTCCCGCCCAGATTCGGG
CACCCACCCGTGACCGAGGAGGAGATGGAGGCGGTGGAGAGTGGCGGGGC
GACCCTGTGAGCGTCGCTCGAGGAGGGGGGCGTGAGGGAGGGAGAAAGGA
CAGACGACTGGGGTTGGGAGGGTAGAGGCAAAGGGGGAGCCTGGCGAAAC
ACGGAGAGAAACGACGGTTTTCGAGCGGATCATGCTACAAAGATTTCTTA
GATTTTGTTCCCGCAGTG
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protein sequence of rna6000

>rna6000-protein ID=rna6000-protein|Name=rna6000|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPK
CSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQ
QLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC
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mRNA from alignment at CM002467.1:320828..321662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6000 ID=rna6000|Name=rna6000|organism=Nannochloropsis gaditana|type=mRNA|length=835bp|location=Sequence derived from alignment at CM002467.1:320828..321662- (Nannochloropsis gaditana)
ATGGCAAATGCTTCAAGCTTTGGAAATGTGACGCGGAGGGACGTGACCGG
GATCGCCACCTTAGGGTAGGTAGGCGGTGGTGCCATCGGAGAGGATTCCC
AGTCTGCCCGCTGTCCCTCGCTGTCACCCACTGAAACCTCTGCTTATTTC
CACGTTTCCGATCGCGGGCTTCGACCATGCGTTAGCGCTTTCCGTACCAT
TATTCTCTGGGTGTGACGATTTCCGTCTTCATCGTCTCCCTCAATCTACC
TCCCTCCACTCTCATCAGCGAGGTCGGGGCCTCCTACACCGTCTACGAAC
GAAACTGGGCCTGCCCTAAGTGCAAGTTTGACAACTATGCGTCTCGGCCC
AAGTGCAGCCGCTGCCGCGCGAGCAAGCCCGAAGGCACCGAGCAGGTCAT
CCCCTCCAGCCTCCCCTCCGCCGCGGGCTTGGACGGACTCTCCCCCTCGA
CCCTCCCCGACACCTGGCACGCCTGGCGCGAGACGGTCGACGCGAGCACG
CAGCAGCTCTACTACTACCACACGCAGACGGGGGAGACCCGATGGGACAG
GCCCGCCGAGATGGGCGAGGCGCCCATGGCCTCTGGCTGGTACGGCCGGG
GGGCCGCCGGGCAAGGAGCAGCCAGGTACCTGGAGGCGAACGAGCGCTAT
TTGAAGCGACCGGCGCGGAAACAGAAGGCTTGTCTGGAGGCGGGACGGTC
CGTATTGGAGGGCGCGAACGAATACAACATCTGGTACGGCAAGTACACGG
GGGAGCACTGGCGTCAGGGCCGGGGCCGGGAGCCCGCGGAGACCCGCTGC
GTGCTGTCTCTGGACGCAGGCCGGACCCGTGCTGA
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Coding sequence (CDS) from alignment at CM002467.1:320828..321662-

>rna6000 ID=rna6000|Name=rna6000|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002467.1:320828..321662- (Nannochloropsis gaditana)
GCCGGACCCGTGCTGACGAGGTCGGGGCCTCCTACACCGTCTACGAACGA
AACTGGGCCTGCCCTAAGTGCAAGTTTGACAACTATGCGTCTCGGCCCAA
GTGCAGCCGCTGCCGCGCGAGCAAGCCCGAAGGCACCGAGCAGGTCATCC
CCTCCAGCCTCCCCTCCGCCGCGGGCTTGGACGGACTCTCCCCCTCGACC
CTCCCCGACACCTGGCACGCCTGGCGCGAGACGGTCGACGCGAGCACGCA
GCAGCTCTACTACTACCACACGCAGACGGGGGAGACCCGATGGGACAGGC
CCGCCGAGATGGGCGAGGCGCCCATGGCCTCTGGCTGATGGCAAATGCTT
CAAGCTTTGGAAATGTGACGCGGAGGGACGTGACCGGGATCGCCACCTTA
GGGCCGGACCCGTGCTGACGAGGTCGGGGCCTCCTACACCGTCTACGAAC
GAAACTGGGCCTGCCCTAAGTGCAAGTTTGACAACTATGCGTCTCGGCCC
AAGTGCAGCCGCTGCCGCGCGAGCAAGCCCGAAGGCACCGAGCAGGTCAT
CCCCTCCAGCCTCCCCTCCGCCGCGGGCTTGGACGGACTCTCCCCCTCGA
CCCTCCCCGACACCTGGCACGCCTGGCGCGAGACGGTCGACGCGAGCACG
CAGCAGCTCTACTACTACCACACGCAGACGGGGGAGACCCGATGGGACAG
GCCCGCCGAGATGGGCGAGGCGCCCATGGCCTCTGGCTGATGGCAAATGC
TTCAAGCTTTGGAAATGTGACGCGGAGGGACGTGACCGGGATCGCCACCT
TAGGGCCGGACCCGTGCTGACGAGGTCGGGGCCTCCTACACCGTCTACGA
ACGAAACTGGGCCTGCCCTAAGTGCAAGTTTGACAACTATGCGTCTCGGC
CCAAGTGCAGCCGCTGCCGCGCGAGCAAGCCCGAAGGCACCGAGCAGGTC
ATCCCCTCCAGCCTCCCCTCCGCCGCGGGCTTGGACGGACTCTCCCCCTC
GACCCTCCCCGACACCTGGCACGCCTGGCGCGAGACGGTCGACGCGAGCA
CGCAGCAGCTCTACTACTACCACACGCAGACGGGGGAGACCCGATGGGAC
AGGCCCGCCGAGATGGGCGAGGCGCCCATGGCCTCTGGCTGATGGCAAAT
GCTTCAAGCTTTGGAAATGTGACGCGGAGGGACGTGACCGGGATCGCCAC
CTTAGG
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Synonyms
Publications