EWM24688.1, cds5985 (CDS) Nannochloropsis gaditana

Overview
NameEWM24688.1
Unique Namecds5985
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:321598..321662 -
Alignment locationCM002467.1:321074..321394 -
Alignment locationCM002467.1:320828..320843 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24688.1
Productpre-mrna-splicing factor
Orig transcript idgnl|cribi|Naga_100839g2.440.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:321598..321662 -
CM002467.1supercontigCM002467.1:321074..321394 -
CM002467.1supercontigCM002467.1:320828..320843 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR001876Znf_RanBP2
Homology
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|585106213|gb|EWM24688.1| (pre-mrna-splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 7.041e-95
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC 133
            MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC
Sbjct:    1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC 133          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|1214704113|gb|OWZ16018.1| (Pre-mRNA-splicing factor cwc2 [Phytophthora megakarya])

HSP 1 Score: 117.472 bits (293), Expect = 1.635e-28
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 0
Query:   15 VTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            VT + TLG+VGASY VYE+NW C  C  DNYA R +C RCRA+K E  + ++  +   A               H WRE +D +T ++YYY+T+T ET+W+RP EMG AP A+GW
Sbjct:   13 VTAVGTLGDVGASYAVYEKNWICDDCGHDNYARRKRCFRCRAAKVERPDVLVVDNKARA---------------HTWREALDPTTHKIYYYNTETNETQWERPVEMGAAPHATGW 112          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|673034016|ref|XP_008870969.1| (hypothetical protein H310_07360 [Aphanomyces invadans] >gi|574473831|gb|ETW00834.1| hypothetical protein H310_07360 [Aphanomyces invadans])

HSP 1 Score: 116.701 bits (291), Expect = 2.615e-28
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R +T +  LGEVGA+YTVYE+NW C +CK +NYA RP+C RCRA K +  + ++ S     +                WRE +D ST ++YYYH +T ET+W+RP EMG AP ++GW
Sbjct:   17 RKLTAVGVLGEVGAAYTVYEKNWFCAECKHENYARRPRCLRCRAPKVQAPDALVYSKSNEDS---------------KWREALDPSTNKIYYYHIETQETQWERPKEMGAAPHSTGW 118          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|325181372|emb|CCA15786.1| (premRNAsplicing factor cwc2 putative [Albugo laibachii Nc14])

HSP 1 Score: 116.701 bits (291), Expect = 2.743e-28
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 0
Query:    1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            MA  ++  N+ R+ +T +ATLG+VGA+Y +YE+NW C  C+ +NY  R +C RCRA              P  A  D L  ++  D  H WRE +D +T ++YYY+  T +T+W+RPAEMG AP ++GW
Sbjct:    1 MAEQNAINNLPRK-ITAVATLGDVGAAYAIYEKNWICEDCRHENYPRRERCFRCRA--------------PKKAAKDALISTSTGDK-HKWREALDVATNKIYYYNIDTNKTQWERPAEMGAAPHSTGW 113          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|698786123|ref|XP_009826105.1| (hypothetical protein H257_03629 [Aphanomyces astaci] >gi|574118933|gb|ETV84413.1| hypothetical protein H257_03629 [Aphanomyces astaci])

HSP 1 Score: 116.316 bits (290), Expect = 3.765e-28
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R +T +  LGEVGA+YTVYE+NW C +CK +NYA RP+C RCRA K +  + ++ S     +                WRE +D ST ++YYYH ++ ET+W+RP EMG AP ++GW
Sbjct:   17 RKLTAVGVLGEVGAAYTVYEKNWFCSECKHENYARRPRCLRCRAPKVQAPDALVYSKTNEGS---------------KWREALDPSTNKIYYYHIESQETQWERPKEMGAAPHSTGW 118          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|635364836|emb|CCI46760.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 115.931 bits (289), Expect = 4.834e-28
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 0
Query:    1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            MA  ++  N+ R+ +T +ATLG+VGA+Y VYE+NW C  C+ +NY  R +C RCRA              P  A  D L  ++  D  H WRE +D +T ++YYY+  T +T+W+RPAEMG AP ++GW
Sbjct:    1 MAELNAVNNLPRK-ITAVATLGDVGAAYAVYEKNWICEDCRHENYPRRERCFRCRA--------------PKKAANDALISTSTGDK-HKWREALDVATNKIYYYNIDTNKTQWERPAEMGAAPHSTGW 113          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|301118621|ref|XP_002907038.1| (pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4] >gi|262105550|gb|EEY63602.1| pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 113.235 bits (282), Expect = 4.876e-27
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R VT + TLG+VGA+Y VYE+NW C  C  +NYA R +C RCRA K E  + ++  S   A               H WRE +D ++ ++YYY+T+T  T+W+RPAEMG AP ++GW
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGDA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|695390921|ref|XP_009519866.1| (hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae] >gi|348684763|gb|EGZ24578.1| hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae])

HSP 1 Score: 113.235 bits (282), Expect = 5.743e-27
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R +T + TLG+VGA+Y VYE+NW C  C  +NYA R +C RCRA K E  + ++  S    AG             HAWRE +D  + ++YYY+TQT  T+W+RPAEMG AP A+GW
Sbjct:    9 RALTAVGTLGDVGAAYAVYEKNWVCADCSHENYARRKRCFRCRAPKVERPDALVVDS----AG-----------DQHAWREALDPVSNKIYYYNTQTNATQWERPAEMGAAPHATGW 110          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|570976538|gb|ETP38326.1| (hypothetical protein F442_14024 [Phytophthora parasitica P10297])

HSP 1 Score: 112.849 bits (281), Expect = 6.834e-27
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R VT + TLG+VGA+Y VYE+NW C  C  +NYA R +C RCRA K E  + ++  S   A               H WRE +D ++ ++YYY+T+T  T+W+RPAEMG AP ++GW
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGGA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113          
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|567983545|gb|ETL33935.1| (hypothetical protein L916_13722 [Phytophthora parasitica] >gi|570944972|gb|ETP10229.1| hypothetical protein F441_14082 [Phytophthora parasitica CJ01A1] >gi|970632740|gb|KUF78826.1| Pre-mRNA-splicing factor cwc2 [Phytophthora nicotianae])

HSP 1 Score: 112.849 bits (281), Expect = 6.975e-27
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
            R VT + TLG+VGA+Y VYE+NW C  C  +NYA R +C RCRA K E  + ++  S   A               H WRE +D ++ ++YYY+T+T  T+W+RPAEMG AP ++GW
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGGA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113          
The following BLAST results are available for this feature:
BLAST of EWM24688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106213|gb|EWM24688.1|7.041e-95100.00pre-mrna-splicing factor [Nannochloropsis gaditana... [more]
gi|1214704113|gb|OWZ16018.1|1.635e-2846.96Pre-mRNA-splicing factor cwc2 [Phytophthora megaka... [more]
gi|673034016|ref|XP_008870969.1|2.615e-2845.30hypothetical protein H310_07360 [Aphanomyces invad... [more]
gi|325181372|emb|CCA15786.1|2.743e-2841.86premRNAsplicing factor cwc2 putative [Albugo laiba... [more]
gi|698786123|ref|XP_009826105.1|3.765e-2844.44hypothetical protein H257_03629 [Aphanomyces astac... [more]
gi|635364836|emb|CCI46760.1|4.834e-2842.64unnamed protein product [Albugo candida][more]
gi|301118621|ref|XP_002907038.1|4.876e-2744.44pre-mRNA-splicing factor cwc2, putative [Phytophth... [more]
gi|695390921|ref|XP_009519866.1|5.743e-2747.01hypothetical protein PHYSODRAFT_484470 [Phytophtho... [more]
gi|570976538|gb|ETP38326.1|6.834e-2744.44hypothetical protein F442_14024 [Phytophthora para... [more]
gi|567983545|gb|ETL33935.1|6.975e-2744.44hypothetical protein L916_13722 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6000rna6000Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications