EWM24688.1, cds5985 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|585106213|gb|EWM24688.1| (pre-mrna-splicing factor [Nannochloropsis gaditana]) HSP 1 Score: 278.1 bits (710), Expect = 7.041e-95 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC 133
MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC
Sbjct: 1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGWPDPC 133
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|1214704113|gb|OWZ16018.1| (Pre-mRNA-splicing factor cwc2 [Phytophthora megakarya]) HSP 1 Score: 117.472 bits (293), Expect = 1.635e-28 Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 0
Query: 15 VTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
VT + TLG+VGASY VYE+NW C C DNYA R +C RCRA+K E + ++ + A H WRE +D +T ++YYY+T+T ET+W+RP EMG AP A+GW
Sbjct: 13 VTAVGTLGDVGASYAVYEKNWICDDCGHDNYARRKRCFRCRAAKVERPDVLVVDNKARA---------------HTWREALDPTTHKIYYYNTETNETQWERPVEMGAAPHATGW 112
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|673034016|ref|XP_008870969.1| (hypothetical protein H310_07360 [Aphanomyces invadans] >gi|574473831|gb|ETW00834.1| hypothetical protein H310_07360 [Aphanomyces invadans]) HSP 1 Score: 116.701 bits (291), Expect = 2.615e-28 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R +T + LGEVGA+YTVYE+NW C +CK +NYA RP+C RCRA K + + ++ S + WRE +D ST ++YYYH +T ET+W+RP EMG AP ++GW
Sbjct: 17 RKLTAVGVLGEVGAAYTVYEKNWFCAECKHENYARRPRCLRCRAPKVQAPDALVYSKSNEDS---------------KWREALDPSTNKIYYYHIETQETQWERPKEMGAAPHSTGW 118
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|325181372|emb|CCA15786.1| (premRNAsplicing factor cwc2 putative [Albugo laibachii Nc14]) HSP 1 Score: 116.701 bits (291), Expect = 2.743e-28 Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 0
Query: 1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
MA ++ N+ R+ +T +ATLG+VGA+Y +YE+NW C C+ +NY R +C RCRA P A D L ++ D H WRE +D +T ++YYY+ T +T+W+RPAEMG AP ++GW
Sbjct: 1 MAEQNAINNLPRK-ITAVATLGDVGAAYAIYEKNWICEDCRHENYPRRERCFRCRA--------------PKKAAKDALISTSTGDK-HKWREALDVATNKIYYYNIDTNKTQWERPAEMGAAPHSTGW 113
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|698786123|ref|XP_009826105.1| (hypothetical protein H257_03629 [Aphanomyces astaci] >gi|574118933|gb|ETV84413.1| hypothetical protein H257_03629 [Aphanomyces astaci]) HSP 1 Score: 116.316 bits (290), Expect = 3.765e-28 Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R +T + LGEVGA+YTVYE+NW C +CK +NYA RP+C RCRA K + + ++ S + WRE +D ST ++YYYH ++ ET+W+RP EMG AP ++GW
Sbjct: 17 RKLTAVGVLGEVGAAYTVYEKNWFCSECKHENYARRPRCLRCRAPKVQAPDALVYSKTNEGS---------------KWREALDPSTNKIYYYHIESQETQWERPKEMGAAPHSTGW 118
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|635364836|emb|CCI46760.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 115.931 bits (289), Expect = 4.834e-28 Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 0
Query: 1 MANASSFGNVTRRDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
MA ++ N+ R+ +T +ATLG+VGA+Y VYE+NW C C+ +NY R +C RCRA P A D L ++ D H WRE +D +T ++YYY+ T +T+W+RPAEMG AP ++GW
Sbjct: 1 MAELNAVNNLPRK-ITAVATLGDVGAAYAVYEKNWICEDCRHENYPRRERCFRCRA--------------PKKAANDALISTSTGDK-HKWREALDVATNKIYYYNIDTNKTQWERPAEMGAAPHSTGW 113
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|301118621|ref|XP_002907038.1| (pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4] >gi|262105550|gb|EEY63602.1| pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4]) HSP 1 Score: 113.235 bits (282), Expect = 4.876e-27 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R VT + TLG+VGA+Y VYE+NW C C +NYA R +C RCRA K E + ++ S A H WRE +D ++ ++YYY+T+T T+W+RPAEMG AP ++GW
Sbjct: 12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGDA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|695390921|ref|XP_009519866.1| (hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae] >gi|348684763|gb|EGZ24578.1| hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae]) HSP 1 Score: 113.235 bits (282), Expect = 5.743e-27 Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R +T + TLG+VGA+Y VYE+NW C C +NYA R +C RCRA K E + ++ S AG HAWRE +D + ++YYY+TQT T+W+RPAEMG AP A+GW
Sbjct: 9 RALTAVGTLGDVGAAYAVYEKNWVCADCSHENYARRKRCFRCRAPKVERPDALVVDS----AG-----------DQHAWREALDPVSNKIYYYNTQTNATQWERPAEMGAAPHATGW 110
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|570976538|gb|ETP38326.1| (hypothetical protein F442_14024 [Phytophthora parasitica P10297]) HSP 1 Score: 112.849 bits (281), Expect = 6.834e-27 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R VT + TLG+VGA+Y VYE+NW C C +NYA R +C RCRA K E + ++ S A H WRE +D ++ ++YYY+T+T T+W+RPAEMG AP ++GW
Sbjct: 12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGGA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113
BLAST of EWM24688.1 vs. NCBI_GenBank
Match: gi|567983545|gb|ETL33935.1| (hypothetical protein L916_13722 [Phytophthora parasitica] >gi|570944972|gb|ETP10229.1| hypothetical protein F441_14082 [Phytophthora parasitica CJ01A1] >gi|970632740|gb|KUF78826.1| Pre-mRNA-splicing factor cwc2 [Phytophthora nicotianae]) HSP 1 Score: 112.849 bits (281), Expect = 6.975e-27 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 0
Query: 13 RDVTGIATLGEVGASYTVYERNWACPKCKFDNYASRPKCSRCRASKPEGTEQVIPSSLPSAAGLDGLSPSTLPDTWHAWRETVDASTQQLYYYHTQTGETRWDRPAEMGEAPMASGW 129
R VT + TLG+VGA+Y VYE+NW C C +NYA R +C RCRA K E + ++ S A H WRE +D ++ ++YYY+T+T T+W+RPAEMG AP ++GW
Sbjct: 12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALVVDSQGGA---------------HTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGW 113 The following BLAST results are available for this feature:
BLAST of EWM24688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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