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Properties
| Property Name | Value |
|---|
| Product | ring-finger-containing e3 ubiquitin |
| Orig transcript id | gnl|cribi|Naga_101270g2.1585.mrna |
| Orig protein id | gnl|cribi|Naga_101270g2.1585 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:316635..318120 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5998 ID=rna5998|Name=rna5998|organism=Nannochloropsis gaditana|type=mRNA|length=2446bp
CAGAAAAGGCCAAGGGAACAACACCTTGGGCAGCCTTTTGGCGGCCATGC
TGAAAACAGTTTTCTCATCAGCACTTCCCTCCAGGCGCCTCACAACCTTG
AGCCGCTTTTTTCCGTCCACAAAGGCGCGATACGAATATCTCGGCCTTTC
CTCTTGCCTCCCCCCGTCGCGACGACCTTTTTTCCCCCGGGCATTTCCCA
GCGACTCTCCCTCCAAGCCCAGCGCACGCTTCCCCTCTATTCGCTGAGTG
GCCCACACGGGTCCCGCGTGCCGACTCGGCGATGTTCCTCTGTACAGGAT
GAGGTTGCCGTCACCCTGCAGCCACAGGAAATGGCGATTCTGGCAGCCAC
CCAGGCTCGTCTCCGTACCGCCACTGGTCGTGAGCCACTGCGAGGTTCGG
CAGCTGCTGATATACTCCCGCATGGCGAGGGAGGGTCCCCCGGGCCGAAG
GACAAGAAGAGCGCTTCTTCGACAGGTCGTCCCGAGAGGTGTGATGCCTT
CCAGGGACACGACATCGAGCGAGGCTCCCGCAAAAACACCCATCGCCAAG
ATTGCGACGCACGCGAGAGACAAGGCATATATTCGGGCCATGCCCGTGCG
CTTACTTGGGACCTCTCCTGTGGCAGTCGGCGCGCCCCTCGCCTCGCCCA
CAAGACCCCCGTCCATGGCTTTCCCGACAGGCTCCCACAGCCCCCTTCCT
TCTAGTTGCTCCAGTCGCGCCCGCGTCTCCCGAAGGCTCTCGGCGGTCGC
CTCCAGCATCTCGTCCGTCTCTGTCTTCTCCCGCCTGGCGCGCGAGAGGG
CTACCTCCTGCTCATGCAGACGTTGCGCGCACCCCTCCAACATCGTGTCC
TTACATTTAGTCTCCTTCTCCCAGCGCCTAACTTCATCTGTAAGTTCCTG
CACCTGTGTGGATAGGCTGGCCACTGTGAACTTCTTTCTCGCCAATTCGT
CGCGCATGCGCGCCCCCTGACGTTCAAGGAGGAATTTTTCTGTTGATGCT
ATCTCGGCTTGCGCTGCAAACGTTTCCTTCTCAATGGCCGAGGCCCCTTC
CTTGTCGTGACTGCCCGTGTACCTTCTAGATGTCCTGGAAACATCGAGGT
CCGGCTCATTCATTGATGGGTGATCGTCCGACGCGAGGCTAGAAGCGGGA
CTTCCGCGGTGGCGACGTTTGAACAGGCGTGCCAGCATCCTTGACGGAAG
GGACAATTTCTAATTGATAACTCCCTCGAAAGGTGCCAGACCCTGTGCCA
GTGTATACAATGAGCATATATAACACTTTAAATTGGCTCAGCGTACAAGG
CGACGGCGCGCCCTTGCATGTGAAGCTGCCAGACGTGGGTTCAGGGGCTT
GGCGACGCGGAGCAGTATGAACATCCCACATCCGGACAAGAGATATTAAG
AATGACTTTATAAGATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCC
GTTGGTGCGTGCACACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCG
AGCGATTGCGTGTGAGGGGCATGGCCATCGCAGACGGAGTGCATGGTATC
ATCAGCGAGGGGAAAACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTT
CCAGGGCCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGGCTTC
CTGGTTACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGCAGCA
GTGCCAACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGTT
GAAGGAAGCGGAGGGGGAAACGCAGGAGAGCCTTCTTCATCTCGACGGGT
TGTGAAGGGTGAGAGCGACCTGCGCGCTATCAAGGCCCTTGTGCAGCAGT
TGGCGGGCCCGTCCCTGCCGTCGCTGTCCTCCTCCCCGCTTACGTCAGAG
CCGCTGCCCGCCAGCCGCAGCAACAGCAGCAGCCACAGCAGCAGCCCCAG
AAGCAGCCACAGCAGCAGCCTAGAGAGCCTGGGCGCGGACAATGACGGGG
CGCACGGCCACCACGGCAGTCTGAGTGGCACCGACGGCGACTCGGAGAGG
GCGGGGGCCAGGGCCGTGGGGGCGGGAGGCTTCTTTCAAGACGTGGATTT
GGAGGCCGGGGAGTCCCAGAGGTGGTCTGATGCGGGTCCAAGCGGGCAGA
CGCAGGATGCGGATCGCACCCTTTGCCTTATCTGTTACGAGGATTTTCCT
CTCGAGGAGGAGCCGCCCCGGCTGCCCCTTCCTGCCCTCCACGGCCCCCC
TGATCCCCCCACCAGGCCAAACATCCCGCCCACCGCGCCCGCTCTCCCAC
CGCGCCCCTCGCCCAGACCCGCGTGCCCGCATTCCTTCTGCCGAAAATGC
GTGGTGGCCTACCTGGAGACTCGCATGCGGGAGGGGCGAACCGACTTTCC
CTGTCCCATGCGGGGGGACGCGGACTGCAGGCATGCCTTCAGGTAG back to topprotein sequence of rna5998 >rna5998-protein ID=rna5998-protein|Name=rna5998|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLP
PPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAV
CEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATER
ASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYH
YSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPF
ALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFP
LVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLV
IRASRRRRLRPSFVLAPMLLITHFLDLDGE back to topmRNA from alignment at CM002467.1:316635..318120+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5998 ID=rna5998|Name=rna5998|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp|location=Sequence derived from alignment at CM002467.1:316635..318120+ (Nannochloropsis gaditana)
CCGGTAGCGGGTGATACCAGGGTAgagaggggcaagaaggcTGTCGCGGT
ACCTCGCTTTGAATCCATCCTGTTGACATCACCCAcacccaccttcctcc
ccggggaAAACTTTCCCTCCAGCCGGCATGCTcacccccccttcttgccc
ccccctcccccctccttccttcaacCTATCCTTTATAGTGAGAACCATCT
CCGCGCCCTTGTGGACCCAGACCTCTTCCAAAAACACGAGCAGAGGCTCA
AGCTCCGCGCGcagccctcccttcgcgAGTGCCCCGCCTGCCAGGCGGTG
TGCGAGGGCGGTTCCAAGcgtcgccctctcctcgtctgcgCCGCCTGCGG
CCTCTCCTTTTGCTTCTTGCACGCCACCGCCCACcccgtggggaaggagg
gcggtgccGGCTGCCGCCGCTACCTCCGCCAGGTGGAAGCGACGGAGCGC
GCATCCAAGACGACCGTCCGGCGCATCAGCAAGCCCTGCCCCAAGTGCAA
GGCCCCCACGGAGAAGAATGGCGGCTGCAACCACATCTCCTGCGCCCAAT
GTCGGCACGAATGGTGCTGGCTTTGCGAGCAGCGCTACACCCCCTACCAC
TACTCTCCGACCAATATCTTTCTGGGCTGCCCGGGCGCCCAGTTTGTCGA
CTTTGGAGGTGGCGCGCGAGGGTGCTGCTGCCGTCTCGGTGCCCCCCTCT
GCCGCCTGCTCCGACTGCTCTTGGCGGGCATTTTGCTGCCCTTGCCCTTT
GCCTTGGGCGTGGTCGTGGGTGTGGTCGGCACCGTGCTCTGGCTGCCAGT
GGGGGTCCTGTGGGCCTGTCTGGGGAAGCTCCTGGCCACCTGCCCCTCGG
GGATGCCCTGCTTTGCGGGGGAATGGAACGCGTGGGACCTATTGTTCCCC
CTCGTGAGCGGATCGCACACATTTCGACAGAGGAACGGGGCCATGGGCTC
AGTGTacgtcttcgtcttcctgggCGCGGCGccgctggtgctggtggccT
CCTTGGTCCTTCAGGTTCTCTGGATGCCTCTGGCCTTGCTGGTTTTGGTG
ATACGAGCCTCGCGCCGACGTCGATTGCGCCCGTCCTTCGTGCTCGCCCC
TATGCTCCTTATTACCCACTTCCTGGACCTCGACGGCGAGTAGAGCCCCG
GGCGCTTTTCGACCTATTGCTCTCTTTGAGCGGAGAGCGTGGGAAGCCTT
GGGTAGCACTGCCTGGGCACTGCACTTGTTAGGGCCTGCGGTGTGTCGGC
TAATCAATTTTGCGTTGTACAGTCAGCATTCATGTAGCGGATACATTACG
GCTGACGTGCGTCGCGGCGATCATGAAATTTTTTGTTCCACGTTGGCCAT
GTTTACTCCAATCATACGTGTGATAAGAAATGTCACAGACACAGCATTGT
ATGTCAAATAAGAGTCTGATCAAGCTGTGGGTCAGTTGCCATTTTGTAAA
TCGTGAAAAGTAAGaacaagctggtggaggaacgAC back to topCoding sequence (CDS) from alignment at CM002467.1:316635..318120+ >rna5998 ID=rna5998|Name=rna5998|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002467.1:316635..318120+ (Nannochloropsis gaditana)
CCGGTAGCGGGTGATACCAGGGTAgagaggggcaagaaggcTGTCGCGGT
ACCTCGCTTTGAATCCATCCTGTTGACATCACCCAcacccaccttcctcc
ccggggaAAACTTTCCCTCCAGCCGGCATGCTcacccccccttcttgccc
ccccctcccccctccttccttcaacCTATCCTTTATAGTGAGAACCATCT
CCGCGCCCTTGTGGACCCAGACCTCTTCCAAAAACACGAGCAGAGGCTCA
AGCTCCGCGCGcagccctcccttcgcgAGTGCCCCGCCTGCCAGGCGGTG
TGCGAGGGCGGTTCCAAGcgtcgccctctcctcgtctgcgCCGCCTGCGG
CCTCTCCTTTTGCTTCTTGCACGCCACCGCCCACcccgtggggaaggagg
gcggtgccGGCTGCCGCCGCTACCTCCGCCAGGTGGAAGCGACGGAGCGC
GCATCCAAGACGACCGTCCGGCGCATCAGCAAGCCCTGCCCCAAGTGCAA
GGCCCCCACGGAGAAGAATGGCGGCTGCAACCACATCTCCTGCGCCCAAT
GTCGGCACGAATGGTGCTGGCTTTGCGAGCAGCGCTACACCCCCTACCAC
TACTCTCCGACCAATATCTTTCTGGGCTGCCCGGGCGCCCAGTTTGTCGA
CTTTGGAGGTGGCGCGCGAGGGTGCTGCTGCCGTCTCGGTGCCCCCCTCT
GCCGCCTGCTCCGACTGCTCTTGGCGGGCATTTTGCTGCCCTTGCCCTTT
GCCTTGGGCGTGGTCGTGGGTGTGGTCGGCACCGTGCTCTGGCTGCCAGT
GGGGGTCCTGTGGGCCTGTCTGGGGAAGCTCCTGGCCACCTGCCCCTCGG
GGATGCCCTGCTTTGCGGGGGAATGGAACGCGTGGGACCTATTGTTCCCC
CTCGTGAGCGGATCGCACACATTTCGACAGAGGAACGGGGCCATGGGCTC
AGTGTacgtcttcgtcttcctgggCGCGGCGccgctggtgctggtggccT
CCTTGGTCCTTCAGGTTCTCTGGATGCCTCTGGCCTTGCTGGTTTTGGTG
ATACGAGCCTCGCGCCGACGTCGATTGCGCCCGTCCTTCGTGCTCGCCCC
TATGCTCCTTATTACCCACTTCCTGGACCTCGACGGCGAGTAG back to top
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