EWM24689.1, cds5983 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|585106216|gb|EWM24689.1| (ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana]) HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query: 1 PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE 380
PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE
Sbjct: 1 PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE 380
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|1173930447|gb|OQR83287.1| (RING-finger-containing E3 ubiquitin ligase [Achlya hypogyna]) HSP 1 Score: 123.635 bits (309), Expect = 1.461e-27 Identity = 69/205 (33.66%), Postives = 105/205 (51.22%), Query Frame = 0
Query: 60 ILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
+ + + ++ALV DLF K+E+ ++ RECP C V G P++ CAAC +FC+ H+ AHP C Y ++ A E+ ++ + +ISKPCP CK+P EKNGGCN + C C +CWLC ++ P H+ N+ GC GAQ + ++ + R+L L+ G P AL +V V+
Sbjct: 201 VAIATSDIQALVPVDLFDKYEKFKFIKTHADARECPYCHHVQVGRGPDDPVIDCAACHETFCYTHSNAHPTST-----CLEYEAKMRAEEKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSESAADGPSTAAKVASFTWRILLCLIFG---PPALALTLVFSVLS 396
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|1173948497|gb|OQR96619.1| (RING-finger-containing E3 ubiquitin ligase, partial [Thraustotheca clavata]) HSP 1 Score: 124.02 bits (310), Expect = 3.936e-27 Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 0
Query: 60 ILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
+L + + ++ LV +++K+E+ ++ RECP C V G P++ C C FC+ H+ AHP C Y ++ A E+ ++ + +ISKPCP CK P EKNGGCN + C QC +CWLC ++ P H+ N+ GC GAQ + C +L L R+LL I P F + V ++
Sbjct: 520 VLITSDDIQTLVSTSVYEKYEKFKFVKTHADARECPFCNFVQVGRGPNDPVMECIKCSKIFCYTHSNAHPT-----TSCIEYEVKMRAEEKINQAKISQISKPCPGCKNPVEKNGGCNQMKCIQCGCHFCWLCGKKVDGGVFPEHFQWWNL-RGCAGAQMSETASEGPSTCSKL---LSFSWRILLCAIFGPPAFVMAVTFSILS 715
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|813226637|ref|XP_012212395.1| (hypothetical protein SPRG_17370 [Saprolegnia parasitica CBS 223.65] >gi|641521056|gb|KDO16895.1| hypothetical protein SPRG_17370 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 118.627 bits (296), Expect = 2.235e-26 Identity = 67/200 (33.50%), Postives = 102/200 (51.00%), Query Frame = 0
Query: 65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
+ ++ALV D+F+K+E+ ++A RECP C + G P + C CG +FC+ H+ AHP + C Y ++ A ++ ++ + +ISKPCP CK+P EKNGGCN + C C +CWLC ++ P H+ N+ GC GAQ + L + RLLL + P AL + V+G
Sbjct: 76 SDIQALVSTDVFEKYEKFNFIKAHADARECPHCHVLQVGNGPDDPHMDCTQCGEAFCYTHSNAHP-----HSTCLEYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSETAVEGPS---TLSKIVSFSWRLLLCLVFGPPALALTLAFSVLG 266
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|813185527|ref|XP_012206935.1| (hypothetical protein SPRG_11364 [Saprolegnia parasitica CBS 223.65] >gi|641528168|gb|KDO22412.1| hypothetical protein SPRG_11364 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query: 65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
+ ++ALV D+F+K+E+ ++A RECP C + G P + C CG +FC+ H+ AHP + C Y ++ A ++ ++ + +ISKPCP CK+P EKNGGCN + C C +CWLC ++ P H+ N+ GC GAQ +
Sbjct: 115 SDIQALVSTDVFEKYEKFNFIKAHAGARECPHCHVLQVGNGPDDPHMDCTQCGEAFCYTHSNAHP-----HSTCLEYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSE 265
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|669136974|ref|XP_008604055.1| (hypothetical protein SDRG_00360 [Saprolegnia diclina VS20] >gi|530744390|gb|EQC42632.1| hypothetical protein SDRG_00360 [Saprolegnia diclina VS20]) HSP 1 Score: 117.472 bits (293), Expect = 2.546e-25 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query: 65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
+ ++ALV ++F+K+E+ ++A RECP C + G P + C CG SFC+ H+ AHP + C Y ++ A ++ ++ + +ISKPCP CK+P EKNGGCN + C C +CWLC ++ P H+ N+ GC GAQ +
Sbjct: 227 SDVQALVSTEVFEKYEKFKFIKAHADARECPHCHLLQVGNGPDDPHMDCMQCGESFCYTHSNAHP-----NSTCLAYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSE 377
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|873235812|emb|CEL99806.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 108.997 bits (271), Expect = 2.251e-22 Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 0
Query: 63 SENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCE---GGSK----RRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
E+ L+D + QK+ + ++R +P+ R CP C + GG + R+ + C CG FC+ HA AHP G C + R ERA++T + KPCP C P EK GGCNH+ C C +CW+C ++ P+HY+ N+ LGCP Q D
Sbjct: 204 DESEFVPLLDHTVVQKYRRYKRIREEPTCRSCPKCDHLVSSSGGGWRLSGGRQADMTCDKCGYRFCYFHADAHP-----GMTCAAHERLHRHEERANRTVIATTCKPCPGCSQPVEKAGGCNHMICTNCGVSFCWICGRKVGEGQFPFHYAWWNV-LGCPTRQMAD 363
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|553182073|ref|XP_005853674.1| (ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana CCMP526] >gi|422295389|gb|EKU22688.1| ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 106.686 bits (265), Expect = 4.535e-22 Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 0
Query: 32 FLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPV--GVLWACLG 275
F EN + R P P + P+L E+ + LV P+ + K+E+ +A + R CP C + E G +P + C+ CG FC+ HA+AHP C Y + ++ + I+KPCP C P EK+GGCN ++C C WCWLC + P H+ N+ GCP Q + L P +RL+ +L L F +G V+GT L++ L+ C+G
Sbjct: 128 FYSEENGRTGREGRRYRTIPRPCA--TPVL--ESDMYTLVCPETWLKYERFKFQKAHRNARMCPFCDSA-ELGDAEQPAMTCSKCGKQFCYFHASAHP-----NKSCTEYEQLTHEETLRNQAMISTIAKPCPGCGNPVEKSGGCNQMACVWCGQNWCWLCGKLVDNGTFPDHFQWWNVIGGCPNMQMQE----------DLEPPPPSHIRLVKFLSILQLIF-IGPAAFVIGTGLYIACFPCFLFKCVG 356
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|675165731|ref|XP_008891750.1| (hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >gi|568022474|gb|ETL96543.1| hypothetical protein L917_06000 [Phytophthora parasitica] >gi|568052835|gb|ETM49697.1| hypothetical protein L914_06120 [Phytophthora parasitica] >gi|568107879|gb|ETN22503.1| hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >gi|570330815|gb|ETO78763.1| hypothetical protein F444_06373 [Phytophthora parasitica P1976]) HSP 1 Score: 108.227 bits (269), Expect = 4.838e-22 Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 63 SENHLRALVDPDLFQKHEQRLKLRAQPSL-RECPACQ--AVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVV 259
S + +++LV +++QK+ + K + L R+CP C +C G P VC AC FCF+H+ AH G C Y +++ A E+ + + +ISKPCP C+ EK GGCN + C C +CW+C + P H+ N+ GC G Q D G + G L ++R+L I P F + VV ++
Sbjct: 309 SVDDIQSLVSDEIWQKY-NKFKFNKEHELARQCPYCDHSQICAGSD--HPECVCEACNREFCFVHSNAHQ-----GRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNV-RGCAGNQMADIEGQG---ATQKGIGL--VMRILFFVIFGPPAFVMAVVFSIM 498
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|970636086|gb|KUF80820.1| (hypothetical protein AM587_10016070 [Phytophthora nicotianae]) HSP 1 Score: 108.227 bits (269), Expect = 5.343e-22 Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 63 SENHLRALVDPDLFQKHEQRLKLRAQPSL-RECPACQ--AVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVV 259
S + +++LV +++QK+ + K + L R+CP C +C G P VC AC FCF+H+ AH G C Y +++ A E+ + + +ISKPCP C+ EK GGCN + C C +CW+C + P H+ N+ GC G Q D G + G L ++R+L I P F + VV ++
Sbjct: 276 SVDDIQSLVSDEIWQKY-NKFKFNKEHELARQCPYCDHSQICAGSD--HPECVCEACNREFCFVHSNAHQ-----GRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNV-RGCAGNQMADIEGQG---ATQKGIGL--VMRILFFVIFGPPAFVMAVVFSIM 465 The following BLAST results are available for this feature:
BLAST of EWM24689.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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