EWM24689.1, cds5983 (CDS) Nannochloropsis gaditana

Overview
NameEWM24689.1
Unique Namecds5983
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:316635..317777 +

Link to JBrowse

Properties
Property NameValue
Start range316635
Start range.
Protein idEWM24689.1
Productring-finger-containing e3 ubiquitin
Partialtrue
Orig transcript idgnl|cribi|Naga_101270g2.1585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:316635..317777 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR031127E3_UB_ligase_RBR
IPR002867Znf_C6HC
Homology
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|585106216|gb|EWM24689.1| (ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana])

HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE 380
            PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE
Sbjct:    1 PVAGDTRVERGKKAVAVPRFESILLTSPTPTFLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPVGVLWACLGKLLATCPSGMPCFAGEWNAWDLLFPLVSGSHTFRQRNGAMGSVYVFVFLGAAPLVLVASLVLQVLWMPLALLVLVIRASRRRRLRPSFVLAPMLLITHFLDLDGE 380          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|1173930447|gb|OQR83287.1| (RING-finger-containing E3 ubiquitin ligase [Achlya hypogyna])

HSP 1 Score: 123.635 bits (309), Expect = 1.461e-27
Identity = 69/205 (33.66%), Postives = 105/205 (51.22%), Query Frame = 0
Query:   60 ILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
            +  + + ++ALV  DLF K+E+   ++     RECP C  V  G     P++ CAAC  +FC+ H+ AHP        C  Y  ++ A E+ ++  + +ISKPCP CK+P EKNGGCN + C  C   +CWLC ++      P H+   N+  GC GAQ  +          ++ +   R+L  L+ G   P   AL +V  V+ 
Sbjct:  201 VAIATSDIQALVPVDLFDKYEKFKFIKTHADARECPYCHHVQVGRGPDDPVIDCAACHETFCYTHSNAHPTST-----CLEYEAKMRAEEKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSESAADGPSTAAKVASFTWRILLCLIFG---PPALALTLVFSVLS 396          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|1173948497|gb|OQR96619.1| (RING-finger-containing E3 ubiquitin ligase, partial [Thraustotheca clavata])

HSP 1 Score: 124.02 bits (310), Expect = 3.936e-27
Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 0
Query:   60 ILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
            +L + + ++ LV   +++K+E+   ++     RECP C  V  G     P++ C  C   FC+ H+ AHP        C  Y  ++ A E+ ++  + +ISKPCP CK P EKNGGCN + C QC   +CWLC ++      P H+   N+  GC GAQ  +        C +L   L    R+LL  I  P  F + V   ++ 
Sbjct:  520 VLITSDDIQTLVSTSVYEKYEKFKFVKTHADARECPFCNFVQVGRGPNDPVMECIKCSKIFCYTHSNAHPT-----TSCIEYEVKMRAEEKINQAKISQISKPCPGCKNPVEKNGGCNQMKCIQCGCHFCWLCGKKVDGGVFPEHFQWWNL-RGCAGAQMSETASEGPSTCSKL---LSFSWRILLCAIFGPPAFVMAVTFSILS 715          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|813226637|ref|XP_012212395.1| (hypothetical protein SPRG_17370 [Saprolegnia parasitica CBS 223.65] >gi|641521056|gb|KDO16895.1| hypothetical protein SPRG_17370 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.627 bits (296), Expect = 2.235e-26
Identity = 67/200 (33.50%), Postives = 102/200 (51.00%), Query Frame = 0
Query:   65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVG 260
            + ++ALV  D+F+K+E+   ++A    RECP C  +  G     P + C  CG +FC+ H+ AHP      + C  Y  ++ A ++ ++  + +ISKPCP CK+P EKNGGCN + C  C   +CWLC ++      P H+   N+  GC GAQ  +           L   +    RLLL  +  P   AL +   V+G
Sbjct:   76 SDIQALVSTDVFEKYEKFNFIKAHADARECPHCHVLQVGNGPDDPHMDCTQCGEAFCYTHSNAHP-----HSTCLEYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSETAVEGPS---TLSKIVSFSWRLLLCLVFGPPALALTLAFSVLG 266          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|813185527|ref|XP_012206935.1| (hypothetical protein SPRG_11364 [Saprolegnia parasitica CBS 223.65] >gi|641528168|gb|KDO22412.1| hypothetical protein SPRG_11364 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query:   65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
            + ++ALV  D+F+K+E+   ++A    RECP C  +  G     P + C  CG +FC+ H+ AHP      + C  Y  ++ A ++ ++  + +ISKPCP CK+P EKNGGCN + C  C   +CWLC ++      P H+   N+  GC GAQ  +
Sbjct:  115 SDIQALVSTDVFEKYEKFNFIKAHAGARECPHCHVLQVGNGPDDPHMDCTQCGEAFCYTHSNAHP-----HSTCLEYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSE 265          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|669136974|ref|XP_008604055.1| (hypothetical protein SDRG_00360 [Saprolegnia diclina VS20] >gi|530744390|gb|EQC42632.1| hypothetical protein SDRG_00360 [Saprolegnia diclina VS20])

HSP 1 Score: 117.472 bits (293), Expect = 2.546e-25
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query:   65 NHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
            + ++ALV  ++F+K+E+   ++A    RECP C  +  G     P + C  CG SFC+ H+ AHP      + C  Y  ++ A ++ ++  + +ISKPCP CK+P EKNGGCN + C  C   +CWLC ++      P H+   N+  GC GAQ  +
Sbjct:  227 SDVQALVSTEVFEKYEKFKFIKAHADARECPHCHLLQVGNGPDDPHMDCMQCGESFCYTHSNAHP-----NSTCLAYEAKMRAEDKVNQAKISQISKPCPGCKSPVEKNGGCNQMKCVTCGVHFCWLCGEKVDDGVFPEHFQWWNL-RGCAGAQMSE 377          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|873235812|emb|CEL99806.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.997 bits (271), Expect = 2.251e-22
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 0
Query:   63 SENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCE---GGSK----RRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRYT----PYHYSPTNIFLGCPGAQFVD 217
             E+    L+D  + QK+ +  ++R +P+ R CP C  +     GG +    R+  + C  CG  FC+ HA AHP     G  C  + R     ERA++T +    KPCP C  P EK GGCNH+ C  C   +CW+C ++      P+HY+  N+ LGCP  Q  D
Sbjct:  204 DESEFVPLLDHTVVQKYRRYKRIREEPTCRSCPKCDHLVSSSGGGWRLSGGRQADMTCDKCGYRFCYFHADAHP-----GMTCAAHERLHRHEERANRTVIATTCKPCPGCSQPVEKAGGCNHMICTNCGVSFCWICGRKVGEGQFPFHYAWWNV-LGCPTRQMAD 363          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|553182073|ref|XP_005853674.1| (ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana CCMP526] >gi|422295389|gb|EKU22688.1| ring-finger-containing e3 ubiquitin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.686 bits (265), Expect = 4.535e-22
Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 0
Query:   32 FLPGENFPSSRHAHPPFLPPPPPSFLQPILYSENHLRALVDPDLFQKHEQRLKLRAQPSLRECPACQAVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVVGTVLWLPV--GVLWACLG 275
            F   EN  + R        P P +   P+L  E+ +  LV P+ + K+E+    +A  + R CP C +  E G   +P + C+ CG  FC+ HA+AHP        C  Y +        ++  +  I+KPCP C  P EK+GGCN ++C  C   WCWLC    +    P H+   N+  GCP  Q  +           L  P    +RL+    +L L F +G    V+GT L++      L+ C+G
Sbjct:  128 FYSEENGRTGREGRRYRTIPRPCA--TPVL--ESDMYTLVCPETWLKYERFKFQKAHRNARMCPFCDSA-ELGDAEQPAMTCSKCGKQFCYFHASAHP-----NKSCTEYEQLTHEETLRNQAMISTIAKPCPGCGNPVEKSGGCNQMACVWCGQNWCWLCGKLVDNGTFPDHFQWWNVIGGCPNMQMQE----------DLEPPPPSHIRLVKFLSILQLIF-IGPAAFVIGTGLYIACFPCFLFKCVG 356          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|675165731|ref|XP_008891750.1| (hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >gi|568022474|gb|ETL96543.1| hypothetical protein L917_06000 [Phytophthora parasitica] >gi|568052835|gb|ETM49697.1| hypothetical protein L914_06120 [Phytophthora parasitica] >gi|568107879|gb|ETN22503.1| hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >gi|570330815|gb|ETO78763.1| hypothetical protein F444_06373 [Phytophthora parasitica P1976])

HSP 1 Score: 108.227 bits (269), Expect = 4.838e-22
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   63 SENHLRALVDPDLFQKHEQRLKLRAQPSL-RECPACQ--AVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVV 259
            S + +++LV  +++QK+  + K   +  L R+CP C    +C G     P  VC AC   FCF+H+ AH      G  C  Y +++ A E+ +   + +ISKPCP C+   EK GGCN + C  C   +CW+C    +    P H+   N+  GC G Q  D  G       + G  L  ++R+L   I  P  F + VV  ++
Sbjct:  309 SVDDIQSLVSDEIWQKY-NKFKFNKEHELARQCPYCDHSQICAGSD--HPECVCEACNREFCFVHSNAHQ-----GRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNV-RGCAGNQMADIEGQG---ATQKGIGL--VMRILFFVIFGPPAFVMAVVFSIM 498          
BLAST of EWM24689.1 vs. NCBI_GenBank
Match: gi|970636086|gb|KUF80820.1| (hypothetical protein AM587_10016070 [Phytophthora nicotianae])

HSP 1 Score: 108.227 bits (269), Expect = 5.343e-22
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   63 SENHLRALVDPDLFQKHEQRLKLRAQPSL-RECPACQ--AVCEGGSKRRPLLVCAACGLSFCFLHATAHPVGKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLC----EQRYTPYHYSPTNIFLGCPGAQFVDFGGGARGCCCRLGAPLCRLLRLLLAGILLPLPFALGVVVGVV 259
            S + +++LV  +++QK+  + K   +  L R+CP C    +C G     P  VC AC   FCF+H+ AH      G  C  Y +++ A E+ +   + +ISKPCP C+   EK GGCN + C  C   +CW+C    +    P H+   N+  GC G Q  D  G       + G  L  ++R+L   I  P  F + VV  ++
Sbjct:  276 SVDDIQSLVSDEIWQKY-NKFKFNKEHELARQCPYCDHSQICAGSD--HPECVCEACNREFCFVHSNAHQ-----GRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNV-RGCAGNQMADIEGQG---ATQKGIGL--VMRILFFVIFGPPAFVMAVVFSIM 465          
The following BLAST results are available for this feature:
BLAST of EWM24689.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106216|gb|EWM24689.1|0.000e+0100.00ring-finger-containing e3 ubiquitin, partial [Nann... [more]
gi|1173930447|gb|OQR83287.1|1.461e-2733.66RING-finger-containing E3 ubiquitin ligase [Achlya... [more]
gi|1173948497|gb|OQR96619.1|3.936e-2732.20RING-finger-containing E3 ubiquitin ligase, partia... [more]
gi|813226637|ref|XP_012212395.1|2.235e-2633.50hypothetical protein SPRG_17370 [Saprolegnia paras... [more]
gi|813185527|ref|XP_012206935.1|3.712e-2636.31hypothetical protein SPRG_11364 [Saprolegnia paras... [more]
gi|669136974|ref|XP_008604055.1|2.546e-2536.31hypothetical protein SDRG_00360 [Saprolegnia dicli... [more]
gi|873235812|emb|CEL99806.1|2.251e-2235.54unnamed protein product [Vitrella brassicaformis C... [more]
gi|553182073|ref|XP_005853674.1|4.535e-2230.40ring-finger-containing e3 ubiquitin, partial [Nann... [more]
gi|675165731|ref|XP_008891750.1|4.838e-2231.86hypothetical protein PPTG_02428 [Phytophthora para... [more]
gi|970636086|gb|KUF80820.1|5.343e-2231.86hypothetical protein AM587_10016070 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5998rna5998Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications