rna5997, rna5997 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5997
Unique Name	rna5997
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2790
Alignment location	CM002467.1:313475..316494 +

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, RING-type, conserved site
Orig transcript id	gnl\|cribi\|Naga_100076g1.8820.mrna
Orig protein id	gnl\|cribi\|Naga_100076g1.8820
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:313475..316494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100076g1	gene5793	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5997	rna5997-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24712.1	cds5982	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:313475..316494+
coding sequence from alignment at CM002467.1:313475..316494+

mRNA sequence

>rna5997 ID=rna5997|Name=rna5997|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp
CAGAAAAGGCCAAGGGAACAACACCTTGGGCAGCCTTTTGGCGGCCATGC
TGAAAACAGTTTTCTCATCAGCACTTCCCTCCAGGCGCCTCACAACCTTG
AGCCGCTTTTTTCCGTCCACAAAGGCGCGATACGAATATCTCGGCCTTTC
CTCTTGCCTCCCCCCGTCGCGACGACCTTTTTTCCCCCGGGCATTTCCCA
GCGACTCTCCCTCCAAGCCCAGCGCACGCTTCCCCTCTATTCGCTGAGTG
GCCCACACGGGTCCCGCGTGCCGACTCGGCGATGTTCCTCTGTACAGGAT
GAGGTTGCCGTCACCCTGCAGCCACAGGAAATGGCGATTCTGGCAGCCAC
CCAGGCTCGTCTCCGTACCGCCACTGGTCGTGAGCCACTGCGAGGTTCGG
CAGCTGCTGATATACTCCCGCATGGCGAGGGAGGGTCCCCCGGGCCGAAG
GACAAGAAGAGCGCTTCTTCGACAGGTCGTCCCGAGAGGTGTGATGCCTT
CCAGGGACACGACATCGAGCGAGGCTCCCGCAAAAACACCCATCGCCAAG
ATTGCGACGCACGCGAGAGACAAGGCATATATTCGGGCCATGCCCGTGCG
CTTACTTGGGACCTCTCCTGTGGCAGTCGGCGCGCCCCTCGCCTCGCCCA
CAAGACCCCCGTCCATGGCTTTCCCGACAGGCTCCCACAGCCCCCTTCCT
TCTAGTTGCTCCAGTCGCGCCCGCGTCTCCCGAAGGCTCTCGGCGGTCGC
CTCCAGCATCTCGTCCGTCTCTGTCTTCTCCCGCCTGGCGCGCGAGAGGG
CTACCTCCTGCTCATGCAGACGTTGCGCGCACCCCTCCAACATCGTGTCC
TTACATTTAGTCTCCTTCTCCCAGCGCCTAACTTCATCTGTAAGTTCCTG
CACCTGTGTGGATAGGCTGGCCACTGTGAACTTCTTTCTCGCCAATTCGT
CGCGCATGCGCGCCCCCTGACGTTCAAGGAGGAATTTTTCTGTTGATGCT
ATCTCGGCTTGCGCTGCAAACGTTTCCTTCTCAATGGCCGAGGCCCCTTC
CTTGTCGTGACTGCCCGTGTACCTTCTAGATGTCCTGGAAACATCGAGGT
CCGGCTCATTCATTGATGGGTGATCGTCCGACGCGAGGCTAGAAGCGGGA
CTTCCGCGGTGGCGACGTTTGAACAGGCGTGCCAGCATCCTTGACGGAAG
GGACAATTTCTAATTGATAACTCCCTCGAAAGGTGCCAGACCCTGTGCCA
GTGTATACAATGAGCATATATAACACTTTAAATTGGCTCAGCGTACAAGG
CGACGGCGCGCCCTTGCATGTGAAGCTGCCAGACGTGGGTTCAGGGGCTT
GGCGACGCGGAGCAGTATGAACATCCCACATCCGGACAAGAGATATTAAG
AATGACTTTATAAGATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCC
GTTGGTGCGTGCACACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCG
AGCGATTGCGTGTGAGGGGCATGGCCATCGCAGACGGAGTGCATGGTATC
ATCAGCGAGGGGAAAACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTT
CCAGGTTCGCACCGAGTGGGGGAGCGTCAATGCGTTGCACAAGCAATGTG
AATGAATACATTTTTATGCTTCTATGAGAGAGCTTTTGGTGTGTAAGGCG
GCAAACACGTGTAGGAATGCCTTCTTGGAGGCATTTCGTATCCATCGCTG
CATGACTTGCCAAAGCTGGAAAATGCACGTGCCTCGGCGGCCTGCACGAG
CCTCACGGTGCCGACATGGCTTTTATGGATCTAAACTTGCCTCTATATTT
GTGCTTTGCGTACCCGCGCAGATTTGGGAGCGATCACAATTTTTATGAGC
GTCCAATTCCCTTCCTATTCTCAGCCCATCTCTTCATCAACTCTACAGGG
CCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGGCTTCCTGGTT
ACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGCAGCAGTGCCA
ACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGTTGAAGGA
AGCGGAGGGGGAAACGCAGGAGAGCCTTCTTCATCTCGACGGGTTGTGAA
GGGTGAGAGCGACCTGCGCGCTATCAAGGCCCTTGTGCAGCAGTTGGCGG
GCCCGTCCCTGCCGTCGCTGTCCTCCTCCCCGCTTACGTCAGAGCCGCTG
CCCGCCAGCCGCAGCAACAGCAGCAGCCACAGCAGCAGCCCCAGAAGCAG
CCACAGCAGCAGCCTAGAGAGCCTGGGCGCGGACAATGACGGGGCGCACG
GCCACCACGGCAGTCTGAGTGGCACCGACGGCGACTCGGAGAGGGCGGGG
GCCAGGGCCGTGGGGGCGGGAGGCTTCTTTCAAGACGTGGATTTGGAGGC
CGGGGAGTCCCAGAGGTGGTCTGATGCGGGTCCAAGCGGGCAGACGCAGG
ATGCGGATCGCACCCTTTGCCTTATCTGTTACGAGGATTTTCCTCTCGAG
GAGGAGCCGCCCCGGCTGCCCCTTCCTGCCCTCCACGGCCCCCCTGATCC
CCCCACCAGGCCAAACATCCCGCCCACCGCGCCCGCTCTCCCACCGCGCC
CCTCGCCCAGACCCGCGTGCCCGCATTCCTTCTGCCGAAAATGCGTGGTG
GCCTACCTGGAGACTCGCATGCGGGAGGGGCGAACCGACTTTCCCTGTCC
CATGCGGGGGGACGCGGACTGCAGGCATGCCTTCAGGTAG

protein sequence of rna5997

>rna5997-protein ID=rna5997-protein|Name=rna5997|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MLRPRSNLHGNSVGACTHLSVPVASDGRRAIACEGHGHRRRSAWYHQRGE
NRALHRARTASFPGPKRRLSHFKMMEQASWLQEHYYDADGESNRSSANSS
IGSLGGLRSFDVEGSGGGNAGEPSSSRRVVKGESDLRAIKALVQQLAGPS
LPSLSSSPLTSEPLPASRSNSSSHSSSPRSSHSSSLESLGADNDGAHGHH
GSLSGTDGDSERAGARAVGAGGFFQDVDLEAGESQRWSDAGPSGQTQDAD
RTLCLICYEDFPLEEEPPRLPLPALHGPPDPPTRPNIPPTAPALPPRPSP
RPACPHSFCRKCVVAYLETRMREGRTDFPCPMRGDADCRHAFR

mRNA from alignment at CM002467.1:313475..316494+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5997 ID=rna5997|Name=rna5997|organism=Nannochloropsis gaditana|type=mRNA|length=3020bp|location=Sequence derived from alignment at CM002467.1:313475..316494+ (Nannochloropsis gaditana)
CAGAAAAGGCCAAGGGAACAACACCTTGGGCAGCCTTTTGGCGGCCATGC
TGAAAACAGTTTTCTCATCAGCActtccctccaggcgccTCACAACCTTG
AGCCGCTTTTTTCCGTCCACAAAGGCGCGATACGAATATCTCGgcctttc
ctcttgcctccccccGTCGCGACGAccttttttcccccgggCATTTCCCA
GcgactctccctccaagcccagcgCACGCTTCCCCTCTATTCGCTGAGTG
GCCCACACGGGTCCCGCGTGCCGACTCGGCGATGTTCCTCTGTACAGGAT
GAGGTTGCCGTCACCCTGCAGCCACAGGAAATGGCGATTCTGGCAGCCAC
CCAGGCTCGTCTCCGTACCGCCACTGGTCGTGAGCCACTGCGAGGTTCGG
CAGCTGCTGATATACTCCCgcatggcgagggagggtccCCCGGGccgaag
gacaagaagagcGCTTCTTCGACAGGTCGTCCCGAGAGGTGTGATGCCTT
CCAGGGACACGACATCGAGCGAGGCTCCCGCAAAAACACCCATCGCCAAG
ATTGCGACGCACGCGAGAGACAAGGCATATATTCGGGCCATGCCCGTGCG
CTTACTTGGGACCTCTCCTGTGGCAGTCGGCGCGCccctcgcctcgccca
cAAGACCCCCGTCCATGGCTTTCCCGACAGGCTCCCAcagcccccttcct
tctagTTGCTCCAGTCGCGCCCGCGTCTCCCGAAGGCTCTCGGCGGTCGC
CTCCAGCATCTCGTCCGTCTCTGTCTTCTCCCGCCTGGCGCGCGAGAGGG
CTACCTCCTGCTCATGCAGACGTTGCGCGCACCCCTCCAACATCGTGTCC
TTACATTtagtctccttctcccagcgCCTAACTTCATCTGTAAGTTCCTG
CACCTGTGTGGATAGGCTGGCCACTGTGAACTTCTTTCTCGCCAATTCGT
CGCGCATGCGCGCCCCCTGACGTTCAAGGAGGAATTTTTCTGTTGATGCT
ATCTCGGCTTGCGCTGCAAACGTTTCCTTCTCAATGGCCGAggccccttc
cttgtcgtgACTGCCCGTGTACCTTCTAGATGTCCTGGAAACATCGAGGT
CCGGCTCATTCATTGATGGGTGATCGTCCGACGCGAGGCTAGAAGCGGGA
CTTCCGCGGTGGCGACGTTTGAACAGGCGTGCCAGCATCCTTGACGGAAG
GGACAATTTCTAATTGATAACTCCCTCGAAAGGTGCCAGACCCTGTGCCA
GTGTATACAATGAGCATATATAACACTTTAAATTGGCTCAGCGTACAAGG
CGACGGCGCGCCCTTGCATGTGAAGCTGCCAGACGTGGGTTCAGGGGCTT
GGCGACGCGGAGCAGTATGAACATCCCACATCCGGACAAGAGATATTAAG
AATGACTTTATAAGATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCC
GTTGGTGCGTGCACACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCG
AGCGATTGCGTGTGAGGGGCATGGCCATCGCAGACGGAGTGCATGGTATC
ATCAGCGAGGGGAAAACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTT
CCAGGTTCGCACCGAGTGGGGGAGCGTCAATGCGTTGCACAAGCAATGTG
AATGAATACATTTTTATGCTTCTATGAGAGAGCTTTTGGTGTGTAAGGCG
GCAAACACGTGTAGGAATGCCTTCTTGGAGGCATTTCGTATCCATCGCTG
CATGACTTGCCAAAGCTGGAAAATGCACGTGCCTCGGCGGCCTGCACGAG
CCTCACGGTGCCGACATGGCTTTTATGGATCTAAACTTGCCTCTATATTT
GTGCTTTGCGTACCCGCGCAGATTTGGGAGCGATCACAATTTTTATGAGC
GTCCAATTCCCTTCCTATTCTCAGCCCATCTCTTCATCAACTCTACAGGG
CCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGGCTTCCTGGTT
ACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGCAGCAGTGCCA
ACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGttgaagga
agcggagggggaaacgcAGGAGAGCCTTCTTCATCTCGACGGGTTGTGAA
GGTCAGTGTCCTTGCTCGACTGCTGTATCTGTGGGGCGTATGAAATTATC
ACGTAGTCTGGAGATATGAGAGTGACGCTGCACCGGATATTTTTCAGTGC
AAGGCAAGCGCACACAGGTGCCTCAGCTTAGGATTGTGCCCTCCCCTGGC
TGCCCACTAAGGACTTGCAGCAGTGCATGATGCGCGACTCATTTTCCCCC
TGCCATGTACTTTGTGGGACACCTTGACCAGGGTGAGAGCGACCTGCGCG
CTATCAAGGCCCTTGTGCAGCAGTTGGCGGGCCCGTCCCTGCcgtcgctg
tcctcctccccgcttaCGTCAGAGCCGCTGCCCGCCagccgcagcaacag
cagcagccacagcagcagccccagaagcagccacagcagcagcctAGAGA
GCCTGGGCGCGGACAATGACGGGGCGCACGGCCACCACGGCAGTCTGAGT
GGCACCGACGGCGActcggagagggcgggggccagggccgtgggggcggg
aggcttcTTTCAAGACGTGGATTTGGAGGCCGGGGAGTCCCAGAGGTGGT
CTGATGCGGGTCCAAGCGGGCAGACGCAGGATGCGGATCGCACCCTTTGC
CTTATCTGTTACGAGGATTTTCCtctcgaggaggagccgcCCCGgctgcc
ccttcctgccctccacggccccccTGATCCCCCCACCAGGCCAAACATCC
CGCCCACCGCGCCCGCTCTCCCACCGCGCCCCTCGCCCAGACCCGCGTGC
CCGCATTCCTTCTGCCGAAAATGCGTGGTGGCCTACCTGGAGACTCGCAT
GCGGGAGGGGCGAACCGACTTTCCCTGTCCCATGCGGGGGGACGCGGACT
GCAGGCATGCCTTCaggtag

Coding sequence (CDS) from alignment at CM002467.1:313475..316494+

>rna5997 ID=rna5997|Name=rna5997|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at CM002467.1:313475..316494+ (Nannochloropsis gaditana)
ATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCCGTTGGTGCGTGCAC
ACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCGAGCGATTGCGTGTG
AGGGGCATGGCCATCGCAGACGGAGTGCATGGTATCATCAGCGAGGGGAA
AACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTTCCAGGGCCAAAGCG
GCGATTGTCGCATTTTAAAATGATGGAACAGGCTTCCTGGTTACAAGAGC
ACTATTATGACGCTGATGGAGAGAGCAATCGCAGCAGTGCCAACAGCAGC
ATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGttgaaggaagcggagg
gggaaacgcAGGAGAGCCTTCTTCATCTCGACGGGTTGTGAAGGGTGAGA
GCGACCTGCGCGCTATCAAGGCCCTTGTGCAGCAGTTGGCGGGCCCGTCC
CTGCcgtcgctgtcctcctccccgcttaCGTCAGAGCCGCTGCCCGCCag
ccgcagcaacagcagcagccacagcagcagccccagaagcagccacagca
gcagcctAGAGAGCCTGGGCGCGGACAATGACGGGGCGCACGGCCACCAC
GGCAGTCTGAGTGGCACCGACGGCGActcggagagggcgggggccagggc
cgtgggggcgggaggcttcTTTCAAGACGTGGATTTGGAGGCCGGGGAGT
CCCAGAGGTGGTCTGATGCGGGTCCAAGCGGGCAGACGCAGGATGCGGAT
CGCACCCTTTGCCTTATCTGTTACGAGGATTTTCCtctcgaggaggagcc
gcCCCGgctgccccttcctgccctccacggccccccTGATCCCCCCACCA
GGCCAAACATCCCGCCCACCGCGCCCGCTCTCCCACCGCGCCCCTCGCCC
AGACCCGCGTGCCCGCATTCCTTCTGCCGAAAATGCGTGGTGGCCTACCT
GGAGACTCGCATGCGGGAGGGGCGAACCGACTTTCCCTGTCCCATGCGGG
GGGACGCGGACTGCAGGCATGCCTTCaggtagATGCTCCGACCCCGGTCC
AACCTTCACGGCAACTCCGTTGGTGCGTGCACACATCTGTCCGTCCCCGT
CGCGAGCGACGGCCGGCGAGCGATTGCGTGTGAGGGGCATGGCCATCGCA
GACGGAGTGCATGGTATCATCAGCGAGGGGAAAACCGAGCCCTCCACCGG
GCACGTACTGCAAGCTTTCCAGGGCCAAAGCGGCGATTGTCGCATTTTAA
AATGATGGAACAGGCTTCCTGGTTACAAGAGCACTATTATGACGCTGATG
GAGAGAGCAATCGCAGCAGTGCCAACAGCAGCATTGGTAGCTTGGGCGGC
CTTCGCAGCTTTGACGttgaaggaagcggagggggaaacgcAGGAGAGCC
TTCTTCATCTCGACGGGTTGTGAAGGGTGAGAGCGACCTGCGCGCTATCA
AGGCCCTTGTGCAGCAGTTGGCGGGCCCGTCCCTGCcgtcgctgtcctcc
tccccgcttaCGTCAGAGCCGCTGCCCGCCagccgcagcaacagcagcag
ccacagcagcagccccagaagcagccacagcagcagcctAGAGAGCCTGG
GCGCGGACAATGACGGGGCGCACGGCCACCACGGCAGTCTGAGTGGCACC
GACGGCGActcggagagggcgggggccagggccgtgggggcgggaggctt
cTTTCAAGACGTGGATTTGGAGGCCGGGGAGTCCCAGAGGTGGTCTGATG
CGGGTCCAAGCGGGCAGACGCAGGATGCGGATCGCACCCTTTGCCTTATC
TGTTACGAGGATTTTCCtctcgaggaggagccgcCCCGgctgccccttcc
tgccctccacggccccccTGATCCCCCCACCAGGCCAAACATCCCGCCCA
CCGCGCCCGCTCTCCCACCGCGCCCCTCGCCCAGACCCGCGTGCCCGCAT
TCCTTCTGCCGAAAATGCGTGGTGGCCTACCTGGAGACTCGCATGCGGGA
GGGGCGAACCGACTTTCCCTGTCCCATGCGGGGGGACGCGGACTGCAGGC
ATGCCTTCaggtagATGCTCCGACCCCGGTCCAACCTTCACGGCAACTCC
GTTGGTGCGTGCACACATCTGTCCGTCCCCGTCGCGAGCGACGGCCGGCG
AGCGATTGCGTGTGAGGGGCATGGCCATCGCAGACGGAGTGCATGGTATC
ATCAGCGAGGGGAAAACCGAGCCCTCCACCGGGCACGTACTGCAAGCTTT
CCAGGGCCAAAGCGGCGATTGTCGCATTTTAAAATGATGGAACAGGCTTC
CTGGTTACAAGAGCACTATTATGACGCTGATGGAGAGAGCAATCGCAGCA
GTGCCAACAGCAGCATTGGTAGCTTGGGCGGCCTTCGCAGCTTTGACGtt
gaaggaagcggagggggaaacgcAGGAGAGCCTTCTTCATCTCGACGGGT
TGTGAAGGGTGAGAGCGACCTGCGCGCTATCAAGGCCCTTGTGCAGCAGT
TGGCGGGCCCGTCCCTGCcgtcgctgtcctcctccccgcttaCGTCAGAG
CCGCTGCCCGCCagccgcagcaacagcagcagccacagcagcagccccag
aagcagccacagcagcagcctAGAGAGCCTGGGCGCGGACAATGACGGGG
CGCACGGCCACCACGGCAGTCTGAGTGGCACCGACGGCGActcggagagg
gcgggggccagggccgtgggggcgggaggcttcTTTCAAGACGTGGATTT
GGAGGCCGGGGAGTCCCAGAGGTGGTCTGATGCGGGTCCAAGCGGGCAGA
CGCAGGATGCGGATCGCACCCTTTGCCTTATCTGTTACGAGGATTTTCCt
ctcgaggaggagccgcCCCGgctgccccttcctgccctccacggcccccc
TGATCCCCCCACCAGGCCAAACATCCCGCCCACCGCGCCCGCTCTCCCAC
CGCGCCCCTCGCCCAGACCCGCGTGCCCGCATTCCTTCTGCCGAAAATGC
GTGGTGGCCTACCTGGAGACTCGCATGCGGGAGGGGCGAACCGACTTTCC
CTGTCCCATGCGGGGGGACGCGGACTGCAGGCATGCCTTCaggtag

Synonyms

Publications