rna5991, rna5991 (mRNA) Nannochloropsis gaditana

Overview
Namerna5991
Unique Namerna5991
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1306
Alignment locationCM002467.1:304323..305117 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g6.8800.mrna
Orig protein idgnl|cribi|Naga_100076g6.8800
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:304323..305117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100076g6gene5788Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24692.1cds5976Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5991rna5991-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5991 ID=rna5991|Name=rna5991|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp
CACAACTTCGCTGCCTCGACAAAGTGTTCCCGCCCGTCGGGCCTACTCAG
ACACTCTCGAGGAATGTGGAGTACTCGTGCGAGGATGGCAGTCCATCGAG
TTATTTCAGACATTTCGCAAGCAGCAAGCAGGCTGCGTGCTCTACGCATC
AGACTCTCGGATGGGAGGGAAAGTTTTTGGTTACAGGGCTCGCCGGCATC
ATTTTTGTTACTTTCATCCCACCATTTCGTTTCTGACTGAGAGTTTTGCA
AATGCAACAGCACAGGCATGGTCAGTCGTCTATTCCTGTTGAGCATTACA
TTGGCTGCTGTAACGGCATGTCAAGCCTTTGTCATCAGGAACTTGCCCTC
CCACGGCCAGGTCAGGGACAGCAAGTTCGGTGCCAGTAGCAGCAAACGGG
GAGGCCACGGGCGCCTCAGTATGCAGTCTTCTTCCTTCTCAATCATGCAG
TCATCCCCAGAGTATGCCTTATTAAAAGAAAGCAACGTGCTAAGCGCCAA
GACAGGACGATCGGTGGCGTTGGGAGACGTTTTTCCGACGGGCGGGAAGA
TGACAATCGTCGCGTTTTTAACCCACTGGGGGGATTTCAACAGTTTTGAG
TACGCACAAAAGCTTCTCCACTACCTCCCCGAGTTAGAGCGGGCGAACGT
GAACGTCGTCGCGGTGGGCATTGGCACGGTGGCTGCCGCGCAGAAGTTTG
CTTCCCTGGTGGGCGGCTTTCCTTTGGACAGGCTGTATGCGGACGAAAGC
GCCGCGAGCTACGGTAAATTCGGGTTTTCGCGTGGCTTTGCTGCGGATCT
GCCAGTGAATCCGTACTTGAAGTTGTTGCCCATGCTCGCGGGGATCGGTT
CGCCCGGCACGTTGCAAGCCGTATTGGCGGGGTATGTGGGCGACAAAAAG
GCGGACGCGTCTTGGACTGGGGACTATCTGAAGAAGGAAGGGCAAGGGCT
GGTGGACAAGAGCGCCTTCGACGTCTTGGGAAGGGAGGGCGCGAGGCCTT
TCGAGGTGGCGACGGTGCGTTTGCAGAACATGATGGCGATTTTGCCGAAC
TGGGAGGCGCTGGTACCGCCCAACAAGCAGTTGATCACGCAGCAGGGAGG
GTCGCTGGTTTTCGAAGGGAGGAAACTGGTGCGGGTGTACCGCGACCGGG
GCATTCTGACTTACACCGACGTGGAGGATCTGCTGCGCACGGTGGGGATG
GCACGGAGGAGATAGGGGTAGTAGGGAGGGGCATAGGCAGGACGAGGTAC
GTAGAACATTAAAGAAAGAATCAATGGGGGATGCGTCAGCGCCCGTCCTA
TACCCC
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protein sequence of rna5991

>rna5991-protein ID=rna5991-protein|Name=rna5991|organism=Nannochloropsis gaditana|type=polypeptide|length=264bp
MPPQRNGSNSLLLLSLLLLALSALSYTPPLFPQRRHAWRTVSVRVPHVAR
VNGVHSLPPPTSSSCFPLTRRQPVQLASVAEPCCRQLSALRAVEIVDDTS
SEDRPEEAPEGTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNI
NYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVW
IALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYL
SSLYTGVPLIPPRT
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mRNA from alignment at CM002467.1:304323..305117-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5991 ID=rna5991|Name=rna5991|organism=Nannochloropsis gaditana|type=mRNA|length=795bp|location=Sequence derived from alignment at CM002467.1:304323..305117- (Nannochloropsis gaditana)
ATGCCGCCGCAGCGCAACGGGAGCAATAGCCTCCTCCTGCTCTCCCTCCT
CCTCCTCGCGTTGTCGGCGCTAAGCTACACGCCTCCGCTATTCCCTCAAC
GTCGGCATGCATGGCGTACTGTATCAGTGCGTGTGCCACATGTGGCTCGC
GTGAATGGTGTCCACTCGTTACCACCGCCCACGTCATCGTCCTGCTTCCC
CCTCACCAGGCGTCAACCCGTCCAGCTTGCCTCTGTCGCAGAACCCTGCT
GTCGGCAGCTCTCCGCTTTGCGAGCTGTGGAAATCGTGGACGATACTTCT
AGTGAAGACAGACCTGAGGAAGCACCCGAGGGGACAGGTACATTTATCTG
GTTCAGGAGATGGTGGAAGAAAACGGCAAAGATAGACAGGAAGAAACTTG
CCGCCCTGGGAGCCAGTGCGTTATGCTCCTACGGCTTGGTCAGCAACATC
AATTATTGCGGAACGCTCTGTGCCTCCTACATCATTTTCACCAAGAAGTA
CAACATCTCGCCCTTCGCGGCAGGGCAATGGAAGAATTTTTTGGCTGTCT
ATGGTACTTTATGGGCCGCCATGAACTTCTTAAGGCCCCTGCGCGTCTGG
ATCGCCCTGGGCGTGACTCCGTACTTTGAAAAGATTGTCGAAACGATTCG
CACGAAATTAAATGTGAAAAAATCTGTGGCATTGGGCATCACAATCTTTC
TCGTTAATGTCTGCGGCACCTTCTCCTTCCTGGGCGCGGGTCTGTATCTA
TCTTCTTTGTACACAGGTGTGCCACTCATTCCCCCACGGACCTGA
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Coding sequence (CDS) from alignment at CM002467.1:304323..305117-

>rna5991 ID=rna5991|Name=rna5991|organism=Nannochloropsis gaditana|type=CDS|length=795bp|location=Sequence derived from alignment at CM002467.1:304323..305117- (Nannochloropsis gaditana)
ATGCCGCCGCAGCGCAACGGGAGCAATAGCCTCCTCCTGCTCTCCCTCCT
CCTCCTCGCGTTGTCGGCGCTAAGCTACACGCCTCCGCTATTCCCTCAAC
GTCGGCATGCATGGCGTACTGTATCAGTGCGTGTGCCACATGTGGCTCGC
GTGAATGGTGTCCACTCGTTACCACCGCCCACGTCATCGTCCTGCTTCCC
CCTCACCAGGCGTCAACCCGTCCAGCTTGCCTCTGTCGCAGAACCCTGCT
GTCGGCAGCTCTCCGCTTTGCGAGCTGTGGAAATCGTGGACGATACTTCT
AGTGAAGACAGACCTGAGGAAGCACCCGAGGGGACAGGTACATTTATCTG
GTTCAGGAGATGGTGGAAGAAAACGGCAAAGATAGACAGGAAGAAACTTG
CCGCCCTGGGAGCCAGTGCGTTATGCTCCTACGGCTTGGTCAGCAACATC
AATTATTGCGGAACGCTCTGTGCCTCCTACATCATTTTCACCAAGAAGTA
CAACATCTCGCCCTTCGCGGCAGGGCAATGGAAGAATTTTTTGGCTGTCT
ATGGTACTTTATGGGCCGCCATGAACTTCTTAAGGCCCCTGCGCGTCTGG
ATCGCCCTGGGCGTGACTCCGTACTTTGAAAAGATTGTCGAAACGATTCG
CACGAAATTAAATGTGAAAAAATCTGTGGCATTGGGCATCACAATCTTTC
TCGTTAATGTCTGCGGCACCTTCTCCTTCCTGGGCGCGGGTCTGTATCTA
TCTTCTTTGTACACAGGTGTGCCACTCATTCCCCCACGGACCTGA
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Synonyms
Publications