EWM24692.1, cds5976 (CDS) Nannochloropsis gaditana

Overview
NameEWM24692.1
Unique Namecds5976
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:304323..305117 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24692.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g6.8800.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:304323..305117 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|585106220|gb|EWM24692.1| (hypothetical protein Naga_100076g6 [Nannochloropsis gaditana])

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MPPQRNGSNSLLLLSLLLLALSALSYTPPLFPQRRHAWRTVSVRVPHVARVNGVHSLPPPTSSSCFPLTRRQPVQLASVAEPCCRQLSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIPPRT 264
            MPPQRNGSNSLLLLSLLLLALSALSYTPPLFPQRRHAWRTVSVRVPHVARVNGVHSLPPPTSSSCFPLTRRQPVQLASVAEPCCRQLSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIPPRT
Sbjct:    1 MPPQRNGSNSLLLLSLLLLALSALSYTPPLFPQRRHAWRTVSVRVPHVARVNGVHSLPPPTSSSCFPLTRRQPVQLASVAEPCCRQLSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIPPRT 264          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|397589951|gb|EJK54857.1| (hypothetical protein THAOC_25476 [Thalassiosira oceanica])

HSP 1 Score: 130.568 bits (327), Expect = 5.012e-33
Identity = 61/132 (46.21%), Postives = 90/132 (68.18%), Query Frame = 0
Query:  130 RKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIP 261
            R++L+ LG SAL SYG VSN++Y  TL  S+ I +K+  +SP A GQWK FLAVYG  +   N +RPLR   ++ V  YFE+ V+ I+ K ++ +  A+G+ +FL NVCGTF+ +G G++++S   GVP+ P
Sbjct:  131 RERLSKLGLSALLSYGFVSNMSYAVTLSLSWFIHSKRTGLSPLAEGQWKPFLAVYGGFYVFNNIIRPLRFGASVLVAKYFEQFVKFIQRKSHLSRKWAIGVVVFLANVCGTFAAMGLGVFIASTAAGVPIFP 262          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|1210514058|dbj|GAX26840.1| (hypothetical protein FisN_9Lh115 [Fistulifera solaris])

HSP 1 Score: 122.865 bits (307), Expect = 7.883e-31
Identity = 59/130 (45.38%), Postives = 90/130 (69.23%), Query Frame = 0
Query:  130 RKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
            R++L  LG +A+ SYG VSN++YC ++  ++ IF+K+   SP A GQWK FLAVY   +   N +RPLR+ +A+GV+P F+  V+ ++ KL V K +A+ IT+ L NV GT SF+  G++L+S+  GVP+
Sbjct:   62 RERLGKLGLAAVLSYGWVSNMSYCVSVSLAWFIFSKQTGKSPLAPGQWKGFLAVYAGFFVFNNIVRPLRLAVAVGVSPKFDAFVKRVQDKLQVGKPLAVTITVILANVVGTISFMCLGIFLASILAGVPV 191          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|1210520833|dbj|GAX20396.1| (hypothetical protein FisN_9Hh115 [Fistulifera solaris])

HSP 1 Score: 121.324 bits (303), Expect = 9.522e-31
Identity = 58/130 (44.62%), Postives = 90/130 (69.23%), Query Frame = 0
Query:  130 RKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
            R++L  +G +A+ SYG VSN++YC ++  ++ IF+K+   SP A GQWK FLAVY   +   N +RPLR+ +A+GV+P F+  V+ ++ KL V K +A+ IT+ L NV GT SF+  G++L+S+  GVP+
Sbjct:   24 RERLGKMGLAAVLSYGWVSNMSYCVSVSLAWFIFSKQTGKSPLAPGQWKGFLAVYAGFFVFNNIVRPLRLAVAVGVSPKFDAFVKRVQDKLQVGKPLAVTITVILANVVGTISFMCFGIFLASILAGVPI 153          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|1072237744|gb|OEU22471.1| (hypothetical protein FRACYDRAFT_162049, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.013 bits (297), Expect = 2.484e-30
Identity = 56/115 (48.70%), Postives = 81/115 (70.43%), Query Frame = 0
Query:  130 RKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFL 244
            R+KLA +G SAL SYG VSN++YC ++  ++  F+KK  +SP A GQW  FLAVY   +   N +RP+R+ I++GVTPYF+K V TI+ K    K++++GI +FL N+CGT S +
Sbjct:    1 RQKLAKMGLSALLSYGFVSNMSYCVSVGLAWFGFSKKTGLSPLAPGQWPKFLAVYAGFYVFNNIVRPIRLAISIGVTPYFDKAVATIQRKTGFNKTLSIGIVVFLANICGTTSLM 115          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|551677122|ref|XP_005841314.1| (hypothetical protein GUITHDRAFT_63464 [Guillardia theta CCMP2712] >gi|428185482|gb|EKX54334.1| hypothetical protein GUITHDRAFT_63464 [Guillardia theta CCMP2712])

HSP 1 Score: 118.242 bits (295), Expect = 1.213e-29
Identity = 56/137 (40.88%), Postives = 88/137 (64.23%), Query Frame = 0
Query:  127 KIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIPPR 263
            K++++KL A+G SA  +YG VSN+N    +  S++ F K   +SP   GQW +FLAVY   W A NFLRP R+ +A+ V+P F+K++  + ++L + +  A  + IFLVNV GT + L  GL++++  TG  L+P +
Sbjct:    3 KVNKEKLTAIGISAALAYGWVSNVNMSLCVILSWVTFGKSCGLSPLDQGQWPSFLAVYAGFWLACNFLRPFRIALAVAVSPAFDKLIHFLESRLGISQQKATFLLIFLVNVVGTLTLLFGGLFVATRLTGTALLPTK 139          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|308810154|ref|XP_003082386.1| (unnamed protein product [Ostreococcus tauri] >gi|116060854|emb|CAL57332.1| unnamed product [Ostreococcus tauri])

HSP 1 Score: 111.694 bits (278), Expect = 5.206e-26
Identity = 76/202 (37.62%), Postives = 102/202 (50.50%), Query Frame = 0
Query:   63 SSCFPLTRRQPVQLASVAEPCCRQLSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRR---WWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAG-QWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKL-NVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
            +S F  T R     A  A  C R+  A RA     +T SE   EE           RR   WW+   KID+KK+A+LG++AL SYG VSN+ Y  +L  +     K    SP  +    K F + Y   W   NFLRP R+ +++ ++P  +KIVE  R    N  K  A  IT+F +NV GTF+++ AG  L    TGVPL
Sbjct:   40 ASSFARTTRD----ARDAFGCHRRPVAARASADASETPSESPSEE--------TLARRVAAWWRAATKIDKKKIASLGSAALLSYGFVSNVFYVSSLMLATYTAVKTTGASPLTSSLSMKTFASSYFGFWMIQNFLRPARMALSVAISPGTDKIVEFFRKYAPNNDKKWAFAITVFCINVVGTFAYMFAGFGLIVALTGVPL 229          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|1199291540|gb|OUS46632.1| (hypothetical protein BE221DRAFT_73989 [Ostreococcus tauri])

HSP 1 Score: 111.309 bits (277), Expect = 5.783e-26
Identity = 70/182 (38.46%), Postives = 95/182 (52.20%), Query Frame = 0
Query:   83 CCRQLSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRR---WWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAG-QWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKL-NVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
            C R+  A RA     +T SE   EE           RR   WW+   KID+KK+A+LG++AL SYG VSN+ Y  +L  +     K    SP  +    K F + Y   W   NFLRP R+ +++ ++P  +KIVE  R    N  K  A  IT+F +NV GTF+++ AG  L    TGVPL
Sbjct:   56 CHRRPVAARASADASETPSESPSEE--------TLARRVAAWWRAATKIDKKKIASLGSAALLSYGFVSNVFYVSSLMLATYTAVKTTGASPLTSSLSMKTFASSYFGFWMIQNFLRPARMALSVAISPGTDKIVEFFRKYAPNNDKKWAFAITVFCINVVGTFAYMFAGFGLIVALTGVPL 229          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|255089699|ref|XP_002506771.1| (predicted protein [Micromonas commoda] >gi|226522044|gb|ACO68029.1| predicted protein [Micromonas commoda])

HSP 1 Score: 112.079 bits (279), Expect = 8.610e-26
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 0
Query:  111 GTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFA-AGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKL-NVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
            GTG     + WW K  KID+  +AALG +AL SYGL+SN+ Y  +L  +     K + +SP       + F+  Y  LW   NFLRP R+ +++ ++P+ +KIVE  R  +   KK  A  +T+F VNV GTF+++  G +L +  TGVPL
Sbjct:  123 GTGGL---KEWWAKAGKIDKSTIAALGGAALLSYGLISNVFYVSSLLGAMYTSCKVHALSPLVDKAAMQTFVTTYFGLWMIQNFLRPARMGLSVAISPFTDKIVEFFRRYVPGNKKPAAFALTVFCVNVLGTFAYMFGGFFLITWLTGVPL 270          
BLAST of EWM24692.1 vs. NCBI_GenBank
Match: gi|397647948|gb|EJK77922.1| (hypothetical protein THAOC_00212 [Thalassiosira oceanica])

HSP 1 Score: 108.612 bits (270), Expect = 8.874e-24
Identity = 50/142 (35.21%), Postives = 88/142 (61.97%), Query Frame = 0
Query:  118 FRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPL 259
             R+++ K +K+DR+ L+ LG SAL +YG VSN++    + +++ IF+K+  +SP   GQ   F  +Y     A+N +RP R  +++ ++P F+KI + I+ +L V    A  + I  +N+ GT S + AG+ L+S+ +GVP+
Sbjct:  250 LRKFFSKNSKLDREFLSKLGLSALLAYGFVSNVSGVVAVSSAWFIFSKRTGLSPLHPGQKAAFFTMYAGFTLALNVIRPARFALSMAISPTFDKIRKGIQVRLGVGPKTAATLMIIFINLMGTTSLMCAGIGLASMLSGVPI 391          
The following BLAST results are available for this feature:
BLAST of EWM24692.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106220|gb|EWM24692.1|0.000e+0100.00hypothetical protein Naga_100076g6 [Nannochloropsi... [more]
gi|397589951|gb|EJK54857.1|5.012e-3346.21hypothetical protein THAOC_25476 [Thalassiosira oc... [more]
gi|1210514058|dbj|GAX26840.1|7.883e-3145.38hypothetical protein FisN_9Lh115 [Fistulifera sola... [more]
gi|1210520833|dbj|GAX20396.1|9.522e-3144.62hypothetical protein FisN_9Hh115 [Fistulifera sola... [more]
gi|1072237744|gb|OEU22471.1|2.484e-3048.70hypothetical protein FRACYDRAFT_162049, partial [F... [more]
gi|551677122|ref|XP_005841314.1|1.213e-2940.88hypothetical protein GUITHDRAFT_63464 [Guillardia ... [more]
gi|308810154|ref|XP_003082386.1|5.206e-2637.62unnamed protein product [Ostreococcus tauri] >gi|1... [more]
gi|1199291540|gb|OUS46632.1|5.783e-2638.46hypothetical protein BE221DRAFT_73989 [Ostreococcu... [more]
gi|255089699|ref|XP_002506771.1|8.610e-2639.74predicted protein [Micromonas commoda] >gi|2265220... [more]
gi|397647948|gb|EJK77922.1|8.874e-2435.21hypothetical protein THAOC_00212 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5991rna5991Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications