rna5990, rna5990 (mRNA) Nannochloropsis gaditana

Overview
Namerna5990
Unique Namerna5990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1593
Alignment locationCM002467.1:302655..304044 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g8.8814.mrna
Orig protein idgnl|cribi|Naga_100076g8.8814
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:302655..304044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100076g8gene5787Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5990rna5990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24706.1cds5975Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5990 ID=rna5990|Name=rna5990|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
ATGGTCAACCCTGCAGACCTGAGCGTTCCTGCCGGCGGGGACCCCCCGGT
CTTTGACGTGGCGGCCGCCTTCCAGGGCCTCTGCGACCGCTCCAATGAGA
TGTCCGAGGAGAAATTCATGGCCACGGTCGAAGCCTTGGAGCCCTGGTTG
GTCCCCGATATCATCGACTTTCTGGTCGCCAAGATCGCGGGCTTCGGGAA
GGAGCGCGAGCCGGCCATCTCCCTCTTGACCAAGCTGGATGCGGCCTTCG
TCCGCCGCAAGCTCCCCGACATCCTCCAGCCCGTCATGAACATGTGCACA
GACACCTCCAAGAAAGTGCGCGAGCTCTCCCTCAAGTGCCTCGAGCACCT
GGTGCAGACGAACGGGAATTCGGACTTGGACAGGGTCATCCCGGGCCTGG
TGCAGGCTCTCAAGGACCCGAACCACACGGTGCAAGCCATCGACGACCTG
GCCTCGTGCGTCTTCGTGCAAGACGTGGAGGCCCCCGCCCTGGCCGTGAT
CATGCCCATTATCCGCCGCGGCCTCCGCCACAAGCAGACGGAGATCCAGC
GCAAGTCCTGCGTGATCCTCGACAACGTCTGCCGCCTGGTCGACGACCCC
AAGGAGCTCTCCATCGCCATCCCGGAGATCCTGCCTTTGGTCAAGTCCTG
CGCCGAGAATATCTCCAAACCGGAGGCCCGCGAGGTGGCCAACCGGGCGC
TCAAGACCATCCTCGACCACTACGACGAGAAGCTGGTTTTGCGGAAGTGG
AGCGTGGAGGAGGTGACGGCCATGATCAAGAAGCACGGGGAGCCGACCGA
GCACATCGTCAAGTGCACCAAGAACCTGTGCGACGCCTATCATTTCGAGA
AGAAGGACTGGGAGCGCGTCTACGGCCAGAAGCATGCGGAGCTGTGCGCC
AAAGTCCTGAACGACTGCGAGATCTTGGCCAGCCCCAACACGATCATCTT
CGAGGACACGGAGGAAGGGCAGGACCTGTACAAGGGCGAGTTCTCTCTGG
CCTACGGGACCCTCACCCTCCTGCGCAAGACGCGGCTGCACTTGAAACGC
AACCGCTTCTACGGCCTGCTGGGCCCCAACAACTGCGGGAAGACGACGCT
GATGCGCGCCATCGATCACGAGCAGATCGAGGGCTTCCCCAAGAAGACGG
AGCTGAAGACCCTCTTCGTCGAGCATGAGATCGAGGAGCGGGAGGTGGGC
GAGGACGAGACCGGATACCCGATCTTTAACACGGATCTGTCGGGGACGGA
CTGGGTGGTGGACTACTGCAACAACGTGGTCAAGCTCCTGCCTGCCATCA
CCACGGAGGCGGCGGCGGCGGCCATGGGGGAGATGGGCTTCGGGAAGGAC
CGCGCGGCCGATGCCGACATGCCCGTGACCACGTACTCGGGTGGCTGGAA
GGTGAAGATGCAGCTTGTGGCGGCGAAGCTCATAAACACGGACTTGCTCA
TGCTGGACGAGCCCACGGGGCACTTGGATGTGACCAATATTGCCTGGCTG
AAAGGCTGGCTTAAGTCCTTCTTGCGGGGGGGGGCTCCATCATCACCACC
TCCCACGACTCGGAGTTCTTGCAGGAGATGTGCACGCACGTGA
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protein sequence of rna5990

>rna5990-protein ID=rna5990-protein|Name=rna5990|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MVSRLFLLSITLAAVTACQAFVIRNLPSHGQVRDSKFGASSSKRGGHGRL
SMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAF
LTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGG
FPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQ
AVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATV
RLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYT
DVEDLLRTVGMARRR
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mRNA from alignment at CM002467.1:302655..304044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5990 ID=rna5990|Name=rna5990|organism=Nannochloropsis gaditana|type=mRNA|length=1390bp|location=Sequence derived from alignment at CM002467.1:302655..304044+ (Nannochloropsis gaditana)
CACAACTTCGCTGCCTCGACAAAGTGTTCCCGCCCGTCGGGCCTACTCAG
ACACTCTCGAGGAATGTGGAGTACTCGTGCGAGGATGGCAGTCCATCGAG
TTATTTCAGACATTTCGCAAGCAGCAAGCAGGCTGCGTGCTCTACGCATC
AGACTCtcggatgggagggaaagtttTTGGTTACAGGGCTCGCCGGCATC
ATTTTTGTTACTTTCATCCCACCATTTCGTTTCTGACTGAGAGTTTTGCA
AATGCAACAGCACAGGCATGGTCAGTCGTCTATTCCTGTTGAGCATTACA
TTGGCTGCTGTAACGGCATGTCAAGCCTTTGTCATCAGGAACTTGCCCTC
CCACGGCCAGGTCAGGGACAGCAAGTTCGGTGCCAGTAGCAGCAAACGGG
GAGGCCACGGGCGCCTCAGTATGcagtcttcttccttctcaatcATGCAG
TCATCCCCAGAGTATGCCTTATTAAAAGAAAGCAACGTGCTAAGCGCCAA
GACAGGACGATCGGTGGCGTTGGGAGACGTTTTTccgacgggcgggaaga
tgACAATCGTCGCGTTTTTAACCCACTGGGGGGATTTCAACAGGTCCGTA
GGCAGACTACACATCAAATAGACTGCATTCATCGTGCCAGGCGTTGAGAA
TCTCTCTATTCTTTTCTCACCGGACAGTTTTGAGTACGCACAAAAGCTTC
TCCACTACCTCCCCGAGTTAGAGCGGGCGAACGTGAACGTCGTCGCGGTG
GGCATTGGCACGGTGGCTGCCGCGCAGAAGTTTGCTTCCCTGGTGGGCGG
CTTTCCTTTGGACAGGCTGTATGCGGACGAAAGCGCCGCGAGCTACGGTA
AATTCGGGTTTTCGCGTGGCTTTGCTGCGGATCTGCCAGTGAATCCGTAC
TTGAAGTTGTTGCCCATGCTCGCGGGGATCGGTTCGCCCGGCACGTTGCA
AGCCGTATTGGCGGGGTATGTGGGCGACAAAAAGGCGGACGCGTCTTGGA
CTGGGGACTAtctgaagaaggaagggcaagggctGGTGGACAAGAGCGCC
TTCGACGTcttgggaagggagggcgcgaggccTTTCGAGGTGGCGACGGT
GCGTTTGCAGAACATGATGGCGATTTTGCCGAACTGGGAGGCGCTGGTAC
CGCCCAACAAGCAGTTGATCACGCAGCAGGGAGGGTCGCTGGTTttcgaa
gggaggaaactgGTGCGGGTGTACCGCGACCGGGGCATTCTGACTTACAC
CGACGTGGAGGATCTGCTGCGCACGGTGGGGATGGCACGGAGGAGATAGG
GGTAGTAGGGAGGGGCATAGGCAGGACGAGGTACGTAGAACATTAAAGAA
AGAATCAATGGGGGATGCGTCAGCGCCCGTCCTATACCCC
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Coding sequence (CDS) from alignment at CM002467.1:302655..304044+

>rna5990 ID=rna5990|Name=rna5990|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002467.1:302655..304044+ (Nannochloropsis gaditana)
ATGGTCAGTCGTCTATTCCTGTTGAGCATTACATTGGCTGCTGTAACGGC
ATGTCAAGCCTTTGTCATCAGGAACTTGCCCTCCCACGGCCAGGTCAGGG
ACAGCAAGTTCGGTGCCAGTAGCAGCAAACGGGGAGGCCACGGGCGCCTC
AGTATGcagtcttcttccttctcaatcATGCAGTCATCCCCAGAGTATGC
CTTATTAAAAGAAAGCAACGTGCTAAGCGCCAAGACAGGACGATCGGTGG
CGTTGGGAGACGTTTTTccgacgggcgggaagatgACAATCGTCGCGTTT
TTAACCCACTGGGGGGATTTCAACAGTTTTGAGTACGCACAAAAGCTTCT
CCACTACCTCCCCGAGTTAGAGCGGGCGAACGTGAACGTCGTCGCGGTGG
GCATTGGCACGGTGGCTGCCGCGCAGAAGTTTGCTTCCCTGGTGGGCGGC
TTTCCTTTGGACAGGCTGTATGCGGACGAAAGCGCCGCGAGCTACGGTAA
ATTCGGGTTTTCGCGTGGCTTTGCTGCGGATCTGCCAGTGAATCCGTACT
TGAAGTTGTTGCCCATGCTCGCGGGGATCGGTTCGCCCGGCACGTTGCAA
GCCGTATTGGCGGGGTATGTGGGCGACAAAAAGGCGGACGCGTCTTGGAC
TGGGGACTAtctgaagaaggaagggcaagggctGGTGGACAAGAGCGCCT
TCGACGTcttgggaagggagggcgcgaggccTTTCGAGGTGGCGACGGTG
CGTTTGCAGAACATGATGGCGATTTTGCCGAACTGGGAGGCGCTGGTACC
GCCCAACAAGCAGTTGATCACGCAGCAGGGAGGGTCGCTGGTTttcgaag
ggaggaaactgGTGCGGGTGTACCGCGACCGGGGCATTCTGACTTACACC
GACGTGGAGGATCTGCTGCGCACGGTGGGGATGGCACGGAGGAGATAGAT
GGTCAGTCGTCTATTCCTGTTGAGCATTACATTGGCTGCTGTAACGGCAT
GTCAAGCCTTTGTCATCAGGAACTTGCCCTCCCACGGCCAGGTCAGGGAC
AGCAAGTTCGGTGCCAGTAGCAGCAAACGGGGAGGCCACGGGCGCCTCAG
TATGcagtcttcttccttctcaatcATGCAGTCATCCCCAGAGTATGCCT
TATTAAAAGAAAGCAACGTGCTAAGCGCCAAGACAGGACGATCGGTGGCG
TTGGGAGACGTTTTTccgacgggcgggaagatgACAATCGTCGCGTTTTT
AACCCACTGGGGGGATTTCAACAGTTTTGAGTACGCACAAAAGCTTCTCC
ACTACCTCCCCGAGTTAGAGCGGGCGAACGTGAACGTCGTCGCGGTGGGC
ATTGGCACGGTGGCTGCCGCGCAGAAGTTTGCTTCCCTGGTGGGCGGCTT
TCCTTTGGACAGGCTGTATGCGGACGAAAGCGCCGCGAGCTACGGTAAAT
TCGGGTTTTCGCGTGGCTTTGCTGCGGATCTGCCAGTGAATCCGTACTTG
AAGTTGTTGCCCATGCTCGCGGGGATCGGTTCGCCCGGCACGTTGCAAGC
CGTATTGGCGGGGTATGTGGGCGACAAAAAGGCGGACGCGTCTTGGACTG
GGGACTAtctgaagaaggaagggcaagggctGGTGGACAAGAGCGCCTTC
GACGTcttgggaagggagggcgcgaggccTTTCGAGGTGGCGACGGTGCG
TTTGCAGAACATGATGGCGATTTTGCCGAACTGGGAGGCGCTGGTACCGC
CCAACAAGCAGTTGATCACGCAGCAGGGAGGGTCGCTGGTTttcgaaggg
aggaaactgGTGCGGGTGTACCGCGACCGGGGCATTCTGACTTACACCGA
CGTGGAGGATCTGCTGCGCACGGTGGGGATGGCACGGAGGAGATAG
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Synonyms
Publications