EWM24706.1, cds5975 (CDS) Nannochloropsis gaditana

Overview
NameEWM24706.1
Unique Namecds5975
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:302922..303247 +
Alignment locationCM002467.1:303332..303953 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24706.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g8.8814.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:302922..303247 +
CM002467.1supercontigCM002467.1:303332..303953 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|585106234|gb|EWM24706.1| (hypothetical protein Naga_100076g8 [Nannochloropsis gaditana])

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MVSRLFLLSITLAAVTACQAFVIRNLPSHGQVRDSKFGASSSKRGGHGRLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGMARRR 315
            MVSRLFLLSITLAAVTACQAFVIRNLPSHGQVRDSKFGASSSKRGGHGRLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGMARRR
Sbjct:    1 MVSRLFLLSITLAAVTACQAFVIRNLPSHGQVRDSKFGASSSKRGGHGRLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGMARRR 315          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|298713055|emb|CBJ48830.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 259.225 bits (661), Expect = 1.781e-82
Identity = 135/252 (53.57%), Postives = 173/252 (68.65%), Query Frame = 0
Query:   65 EYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLP----VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGM 311
            EY LL+  +V SA +G+ + L   + P  GK TIVAF TH  DFNS+EYAQKL HYLP+++ A V VV V +GTV AA+ F +  G FPLD ++ D +  +Y   GFS GF   LP    +NPYL+LLPMLAGIGSPGT+QAVL GYVGD  ++A W    L      +VD   FD LG  G+RP EVAT+RLQNM  I+  W  L PP+K+LITQQGG++VFEGR  +  Y+D+GIL YTDV ++L+T+G+
Sbjct:   21 EYELLRGVSVKSASSGKEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETG-FPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSAL-----SMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKGILVYTDVLEMLKTIGV 266          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|302834892|ref|XP_002949008.1| (hypothetical protein VOLCADRAFT_89241 [Volvox carteri f. nagariensis] >gi|300265753|gb|EFJ49943.1| hypothetical protein VOLCADRAFT_89241 [Volvox carteri f. nagariensis])

HSP 1 Score: 216.853 bits (551), Expect = 1.490e-65
Identity = 119/251 (47.41%), Postives = 159/251 (63.35%), Query Frame = 0
Query:   59 IMQSSPEYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYA-DESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLR 307
             +++S EY  L+      A +G  V L  ++ P      +++FLTH+ D +S+E+AQKL+  +P LE + V  +AVG+G+V  AQ+FA  +  FPLDRLYA  E    Y + GFS GFA DL VNPYLKL+PMLAG+GSPGT+Q VL GYVGDK A   +               + FDVLG    RPFE+AT+RL NMM ILP W  L P +  L+TQQGG +VF G ++V  + D GIL YTDV+++L+
Sbjct:   30 CVRASAEYEALRGKVAYKASSGDPVELLSLWEPAPTSKAVISFLTHFADLSSWEFAQKLVKVIPTLEGSGVRFLAVGLGSVGNAQEFARTLN-FPLDRLYAMPEGGELYRQLGFSAGFAPDLNVNPYLKLVPMLAGVGSPGTVQEVLRGYVGDKTAKPVFD------------SPTPFDVLGPGYQRPFELATLRLFNMMGILPKWSELCPADPSLLTQQGGCVVFAGEQVVFKHVDSGILRYTDVDEILK 267          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|552834313|ref|XP_005848699.1| (hypothetical protein CHLNCDRAFT_144332 [Chlorella variabilis] >gi|307108357|gb|EFN56597.1| hypothetical protein CHLNCDRAFT_144332 [Chlorella variabilis])

HSP 1 Score: 211.075 bits (536), Expect = 2.043e-63
Identity = 118/242 (48.76%), Postives = 156/242 (64.46%), Query Frame = 0
Query:   65 EYALLKESNVLSAKTGRSVALGDVFPTG-GKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDL 305
            +Y +L++  VLSA +G  VAL  ++    G   +VA LTH+GD +S E AQKLL  LPEL  + V V+AVG+G    A+KFA L+G FPLD LYAD + A Y    FS GFA +  ++ Y KLL MLAG+GSPGT+Q VL GYVGD+ A   +T       G G    + FDVLGR   RPFE+AT+RL NM  +L +W  L P +++L+TQQGG L F+GR+ +  + D GIL Y D++ L
Sbjct:   23 DYDVLQQHTVLSAASGEEVALTSLWQAQPGTRCVVACLTHFGDLSSTECAQKLLAVLPELRASGVGVLAVGLGEPEKARKFAELLG-FPLDLLYADPTGALYSALAFSPGFAPETRISAYAKLLVMLAGVGSPGTIQEVLRGYVGDRSAKPVFT-SGGGGGGGGGGGGNLFDVLGRGYQRPFELATLRLYNMNLVLSHWNELAPADERLLTQQGGCLAFDGRQTIFRHTDTGILKYADIDAL 262          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|551649662|ref|XP_005827615.1| (hypothetical protein GUITHDRAFT_88647 [Guillardia theta CCMP2712] >gi|428171721|gb|EKX40635.1| hypothetical protein GUITHDRAFT_88647 [Guillardia theta CCMP2712])

HSP 1 Score: 206.068 bits (523), Expect = 4.791e-61
Identity = 119/274 (43.43%), Postives = 159/274 (58.03%), Query Frame = 0
Query:   36 KFGASSSKRGGHGRLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGF-------AADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQG---LVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTY 299
            K  ASS K     R    +S      S  EY  LK   V + KT     +  V P+G ++ +  FLTH+GD +S+EYA++LLHY+P L    V V+A+GIG+  A +KFA  +  FP + L+ D  A+   + GFS GF       A   P++PYL+LLPML GIGSPGTL  V+ GY GD+  D  WT  +L+    G    V+   FD LG    RPFE+ATVRLQNM+ IL  W  L+P N+ L+ QQGG++V EG + +  + DRGIL Y
Sbjct:   20 KLTASSPKLTASPRFPRATSHRLCEMSVSEYETLKGLRVKNVKTCEGADI--VSPSGRRLLV--FLTHFGDLSSWEYARQLLHYMPLLHSRGVKVMAIGIGSQEAGKKFADQLK-FPEELLFFDPDASCAAELGFSAGFGRSSARDAQSNPLSPYLRLLPMLLGIGSPGTLGQVIYGYFGDRGYDPKWTVSHLRDFATGSFPFVEPELFDRLGSGYLRPFELATVRLQNMIGILEQWNELIPENQDLVVQQGGTIVMEGDQTIYRFDDRGILVY 288          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|159467230|ref|XP_001691801.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158279147|gb|EDP04909.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 205.297 bits (521), Expect = 6.869e-61
Identity = 112/249 (44.98%), Postives = 152/249 (61.04%), Query Frame = 0
Query:   60 MQSSPEYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLR 307
            + +S EY  L+      A +G  V +  ++ P  G   +V  LTH+ D  S+E AQKL+  +P LE + V VV +G+G V  AQ+FA ++  FP+DRL+A  +A  Y   GF+ GFA  L V+PY+KLLPMLAG+GSPGT+Q V+ GYVGD  A   +               + FDVLG    RPFE+AT+RL NMM ILP W+ L PP+  L+TQQGG LVF G  +V  + D GIL YT+ + +L+
Sbjct:   36 VHASAEYEALRGKVAYKASSGDPVEITSMWEPVLGSKAVVVCLTHFADLTSWELAQKLVKIIPTLEGSGVKVVVLGLGNVNNAQEFARILK-FPMDRLFAYPAADLYLDLGFNPGFAPQLQVSPYVKLLPMLAGVGSPGTIQEVVRGYVGDSAAPPVFD------------SPTPFDVLGSGYQRPFELATLRLFNMMGILPKWQELCPPDTGLLTQQGGCLVFSGSSVVFKHVDSGILRYTEPDSILQ 271          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|971511807|dbj|GAQ86414.1| (hypothetical protein KFL_002870180 [Klebsormidium nitens])

HSP 1 Score: 206.068 bits (523), Expect = 1.258e-60
Identity = 121/286 (42.31%), Postives = 168/286 (58.74%), Query Frame = 0
Query:   25 NLPSHGQV---RDSKFGASSSKRGGHGRLSMQSSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVFPTG-GKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLL 306
            +LP   Q+    D + G+   +   HG    +S +    +SS +Y  LK   VL A +G+ V L  ++    G   ++ F+TH+ D +S+E+AQKL   LPEL+   V +VAVG+G+   A++FA  VG FPL  LYAD + A Y    FS GFA +  V+PYLKLLPML GIGSPGT+Q V  GY GD+ +   + G             + FD+LG+   RP E+AT+RL NM  IL  W  + PP  +L+TQQGGS+VF+G  +V  + D GIL YTDV+ L+
Sbjct:   68 HLPRKSQLCLGTDLRLGSKRRRSLSHGVSKARSGA---ARSSLDYDALKGVQVLEAASGQPVELLSLWAAKPGVRVVIPFMTHFADLSSWEFAQKLAKKLPELQANGVRIVAVGLGSPDNARRFAETVG-FPLQLLYADPTGACYRALNFSPGFAPEAGVSPYLKLLPMLMGIGSPGTIQEVARGYFGDRGSKPVFEGS------------TPFDILGKGYQRPMELATLRLFNMFGILQKWGEMSPPETRLLTQQGGSIVFDGEDVVFKHVDSGILKYTDVDALV 337          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|545354500|ref|XP_005643084.1| (hypothetical protein COCSUDRAFT_60209 [Coccomyxa subellipsoidea C-169] >gi|384245044|gb|EIE18540.1| hypothetical protein COCSUDRAFT_60209 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 201.06 bits (510), Expect = 1.761e-60
Identity = 107/213 (50.23%), Postives = 138/213 (64.79%), Query Frame = 0
Query:  101 LTHWGDFNSFEYAQKLLHYLPELE----RANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTV 309
            +TH+GD +S+E AQKL   LP+L+    +    V+AVG+G+   A+ FA  +  FPLD LYAD + A Y   GFS GFA D  V+PYLKLLPML GIGSPGT+Q VL GY+GD+ A   + G             + F+VLG    RP E+AT+RL NMM ILP W  L PP++ L+TQQGGSLVF+G K++  + D GIL YTD++ LL  V
Sbjct:    1 MTHFGDLSSWELAQKLKKKLPDLQARQAKLGKKVIAVGLGSTENARAFARALD-FPLDLLYADSTGAVYRALGFSPGFAPDADVSPYLKLLPMLMGIGSPGTIQEVLRGYIGDRSAKPVFEG------------ATPFNVLGGGYQRPLELATLRLSNMMGILPKWSELCPPDESLLTQQGGSLVFQGEKVIFSHTDSGILKYTDLDALLDAV 200          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|926784954|ref|XP_013900951.1| (hypothetical protein MNEG_6027 [Monoraphidium neglectum] >gi|761971321|gb|KIZ01932.1| hypothetical protein MNEG_6027 [Monoraphidium neglectum])

HSP 1 Score: 188.348 bits (477), Expect = 3.511e-54
Identity = 104/225 (46.22%), Postives = 144/225 (64.00%), Query Frame = 0
Query:   93 GKMTIVAFLTHWGDFNSFEYAQKLLHY-LPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLP-VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGMARRR 315
            G   +V FLTH+GD  S+E+AQKL    L  L+ A V V++VG+G+  +A+ FA+ +  +PL+ LYAD + A     GFS GFA  +  V+PYLKLLPML GIGSPGT+Q VL GYVGD++A   + G   +          AFD+LG+   RP E+AT+RLQNM+ +L  W  L P  K+L+TQQGG +VF+G  +V  + D GIL Y DV+ +++    A R+
Sbjct:   85 GNRVVVPFLTHFGDLTSWEFAQKLQKKALGPLQEAGVKVISVGLGSPESARTFAAALD-YPLEGLYADPTGACCKALGFSPGFADSVEGVDPYLKLLPMLMGIGSPGTVQEVLRGYVGDREAPPVFDGTLGR----------AFDILGKGYQRPLELATLRLQNMVGVLSKWGDLAPSEKRLLTQQGGCIVFDGCDVVYRHADPGILKYADVDAVVQAATQAPRK 298          
BLAST of EWM24706.1 vs. NCBI_GenBank
Match: gi|255075367|ref|XP_002501358.1| (predicted protein, partial [Micromonas commoda] >gi|226516622|gb|ACO62616.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 176.792 bits (447), Expect = 4.930e-50
Identity = 111/246 (45.12%), Postives = 146/246 (59.35%), Query Frame = 0
Query:   67 ALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFA----------ADLP-VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWT--GDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTY 299
            A LK   +  A  G++V    + P+ G++ +V FLT + DF+S+E AQKL+  +PEL+   V +VAVGIG+V AA++F+     FPLDRLYADE+AA+Y    F+ GF             LP VN Y KLL M AGIGSPGTL AV  GY+G K  D  +    +Y     + L+D +    LG    RPFE+AT+RL NM  IL NWE L P +  L+ Q+GGSLVF+    V  + D GIL Y
Sbjct:   50 AKLKGVELKRATDGQTVDAASIVPSSGRV-VVPFLTQFADFDSWELAQKLVDDIPELDANGVTLVAVGIGSVEAAKEFSRRTN-FPLDRLYADETAAAYQALDFAPGFGRAGGELGWIGEKLPFVNGYAKLLVMCAGIGSPGTLGAVFGGYIGSKYRDPIFREGSNYDNPTIRKLMDAT----LGGGYQRPFELATLRLTNMTEILSNWEDLAPVDDNLLVQRGGSLVFQDGACVFRHNDAGILGY 289          
The following BLAST results are available for this feature:
BLAST of EWM24706.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106234|gb|EWM24706.1|0.000e+0100.00hypothetical protein Naga_100076g8 [Nannochloropsi... [more]
gi|298713055|emb|CBJ48830.1|1.781e-8253.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|302834892|ref|XP_002949008.1|1.490e-6547.41hypothetical protein VOLCADRAFT_89241 [Volvox cart... [more]
gi|552834313|ref|XP_005848699.1|2.043e-6348.76hypothetical protein CHLNCDRAFT_144332 [Chlorella ... [more]
gi|551649662|ref|XP_005827615.1|4.791e-6143.43hypothetical protein GUITHDRAFT_88647 [Guillardia ... [more]
gi|159467230|ref|XP_001691801.1|6.869e-6144.98predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|971511807|dbj|GAQ86414.1|1.258e-6042.31hypothetical protein KFL_002870180 [Klebsormidium ... [more]
gi|545354500|ref|XP_005643084.1|1.761e-6050.23hypothetical protein COCSUDRAFT_60209 [Coccomyxa s... [more]
gi|926784954|ref|XP_013900951.1|3.511e-5446.22hypothetical protein MNEG_6027 [Monoraphidium negl... [more]
gi|255075367|ref|XP_002501358.1|4.930e-5045.12predicted protein, partial [Micromonas commoda] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5990rna5990Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications