rna5989, rna5989 (mRNA) Nannochloropsis gaditana

Overview
Namerna5989
Unique Namerna5989
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1314
Alignment locationCM002467.1:300202..301794 -

Link to JBrowse

Properties
Property NameValue
Productelongation factor 3
Orig transcript idgnl|cribi|Naga_100076g9.8801.mrna
Orig protein idgnl|cribi|Naga_100076g9.8801
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:300202..301794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100076g9gene5786Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24693.1cds5974Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5989rna5989-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5989 ID=rna5989|Name=rna5989|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp
ATGAAGGGCAATCTGAACGACTTCGTGGCCAAGTTCCCGGAGAAGAAGAG
CTACTTCGTCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCCCG
GGCCCCTGGAAGGTGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGACG
GGCGTGACCTTCCAGTACCCGACGCGCGACAAGCCGACGGTCATGGACAT
CTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAACG
GGGCGGGCAAGTCTACGGCCATCAAGCTCTTGATCGGAGAGCTCACGCCT
TCGCAAGGGAGTATCACCAAGCACCCGAACATGCGCCTGGCCTACGTGGC
CCAGCACGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCC
AGTACATCATGTGGCGGTTCGCGGGGAACGAGGACAAGGAGTCCCTGGAC
CTCCTGAACAAGAAGAAGGAGGTGGACAAGGAGGTGACCAAGTACTTCAT
CCGGGAAGGGACGACGCTCTGCCAGTGCTACTCCCCCGCGGAGGAGAAGC
TGGCGGTGGAGCCTGAGGCGATCATCAACCGGCACGAGGACAAGAAGGCC
AAGACGAAGGAGTACGAGGTGAAGTGGCGAGGCAAGTCCACCGACTGCAA
CCTGTGGGTCAGGCGAGACGTGCTCCTGTCCATGGGCGCCGAGAAAATGG
TGCAGAAATTCGACGAGAAGATGGCGGCGGAGGCGGGGCTCCAGTTCAAG
CCCCTGACCACTTCCGCGATCGAGAAGCATTTGGCCGACTTTGGGATCGA
TCCGGAGGATGCCTCCCACACCCTGATCAAGTCCCTCTCGGGGGGGCAGA
AGATCAAGGTGGTGATGGCCGCGTGCTTCTGGCAGAACCCGCACATCATC
GTCCTGGACGAGCCCACCAACTACCTGGACCGGGACTCCCTCGGCGCCTT
GGTGCAGGCCATCCACGACTACAAGGGCGGTGTCATCATCATCTCCCACA
ACCGAGAGTTCGCGGGGGCGGTCTGCCAAGAGAAGTGGATCATGGACAAG
GGCCGCTTGCGTCGGGAGGGGGAGTCGGTAGCCTTGCACGAGGAGGAGGA
GAAAAAGGAGGAGCTTGGGGACAAGGTGGTGATCGACGCTCTGGGCAACG
AGATCAAGGTGAACAAGCAAACGACCCTGTCCGACAAGGAAAAGAAGAAG
GAAATCAAGCGGCTGCAAAAAATGATAACCGACGGGCGGAAAAAGAAGAC
TCTGAATGAAGATACGATCCTGGACCTAGAGCTGAAGCTGGAGGAGCTGA
AGGCCGCCCCTTGA
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protein sequence of rna5989

>rna5989-protein ID=rna5989-protein|Name=rna5989|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MVNPADLSVPAGGDPPVFDVAAAFQGLCDRSNEMSEEKFMATVEALEPWL
VPDIIDFLVAKIAGFGKEREPAISLLTKLDAAFVRRKLPDILQPVMNMCT
DTSKKVRELSLKCLEHLVQTNGNSDLDRVIPGLVQALKDPNHTVQAIDDL
ASCVFVQDVEAPALAVIMPIIRRGLRHKQTEIQRKSCVILDNVCRLVDDP
KELSIAIPEILPLVKSCAENISKPEAREVANRALKTILDHYDEKLVLRKW
SVEEVTAMIKKHGEPTEHIVKCTKNLCDAYHFEKKDWERVYGQKHAELCA
KVLNDCEILASPNTIIFEDTEEGQDLYKGEFSLAYGTLTLLRKTRLHLKR
NRFYGLLGPNNCGKTTLMRAIDHEQIEGFPKKTELKTLFVEHEIEEREVG
EDETGYPIFNTDLSGTDWVVDYCNNVVKLLPAITTEAAAAAMGEMGFGKD
RAADADMPVTTYSGGWKVKMQLVAAKLINTDLLMLDEPTGHLDVTNIAWL
KGWLKSFLRGGAPSSPPPTTRSSCRRCART
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mRNA from alignment at CM002467.1:300202..301794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5989 ID=rna5989|Name=rna5989|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp|location=Sequence derived from alignment at CM002467.1:300202..301794- (Nannochloropsis gaditana)
ATGGTCAACCCTGCAGACCTGAGCGTTCCTGCCGGCGGGGACCCCCCGGT
CTTTGACGTGGCGGCCGCCTTCCAGGGCCTCTGCGACCGCTCCAATGAGA
TGTCCGAGGAGAAATTCATGGCCACGGTCGAAGCCTTGGAGCCCTGGTTG
GTCCCCGATATCATCGACTTTCTGGTCGCCAAGATCGCGGGCTTCGGGAA
GGAGCGCGAGCCGGCCATCTCCCTCTTGACCAAGCTGGATGCGGCCTTCG
TCCGCCGCAAGCTCCCCGACATCCTCCAGCCCGTCATGAACATGTGCACA
GACACCTCCAAGAAAGTGCGCGAGCTCTCCCTCAAGTGCCTCGAGCACCT
GGTGCAGACGAACGGGAATTCGGACTTGGACAGGGTCATCCCGGGCCTGG
TGCAGGCTCTCAAGGACCCGAACCACACGGTGCAAGCCATCGACGACCTG
GCCTCGTGCGTCTTCGTGCAAGACGTGGAGGCCCCCGCCCTGGCCGTGAT
CATGCCCATTATCCGCCGCGGCCTCCGCCACAAGCAGACGGAGATCCAGC
GCAAGTCCTGCGTGATCCTCGACAACGTCTGCCGCCTGGTCGACGACCCC
AAGGAGCTCTCCATCGCCATCCCGGAGATCCTGCCTTTGGTCAAGTCCTG
CGCCGAGAATATCTCCAAACCGGAGGCCCGCGAGGTGGCCAACCGGGCGC
TCAAGACCATCCTCGACCACTACGACGAGAAGCTGGTTTTGCGGAAGTGG
AGCGTGGAGGAGGTGACGGCCATGATCAAGAAGCACGGGGAGCCGACCGA
GCACATCGTCAAGTGCACCAAGAACCTGTGCGACGCCTATCATTTCGAGA
AGAAGGACTGGGAGCGCGTCTACGGCCAGAAGCATGCGGAGCTGTGCGCC
AAAGTCCTGAACGACTGCGAGATCTTGGCCAGCCCCAACACGATCATCTT
CGAGGACACGGAGGAAGGGCAGGACCTGTACAAGGGCGAGTTCTCTCTGG
CCTACGGGACCCTCACCCTCCTGCGCAAGACGCGGCTGCACTTGAAACGC
AACCGCTTCTACGGCCTGCTGGGCCCCAACAACTGCGGGAAGACGACGCT
GATGCGCGCCATCGATCACGAGCAGATCGAGGGCTTCCCCAAGAAGACGG
AGCTGAAGACCCTCTTCGTCGAGCATGAGATCGAGGAGCGGGAGGTGGGC
GAGGACGAGACCGGATACCCGATCTTTAACACGGATCTGTCGGGGACGGA
CTGGGTGGTGGACTACTGCAACAACGTGGTCAAGCTCCTGCCTGCCATCA
CCACGGAGGCGGCGGCGGCGGCCATGGGGGAGATGGGCTTCGGGAAGGAC
CGCGCGGCCGATGCCGACATGCCCGTGACCACGTACTCGGGTGGCTGGAA
GGTGAAGATGCAGCTTGTGGCGGCGAAGCTCATAAACACGGACTTGCTCA
TGCTGGACGAGCCCACGGGGCACTTGGATGTGACCAATATTGCCTGGCTG
AAAGGCTGGCTTAAGTCCTTCTTGCGGGGGGGGGCTCCATCATCACCACC
TCCCACGACTCGGAGTTCTTGCAGGAGATGTGCACGCACGTGA
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Coding sequence (CDS) from alignment at CM002467.1:300202..301794-

>rna5989 ID=rna5989|Name=rna5989|organism=Nannochloropsis gaditana|type=CDS|length=1593bp|location=Sequence derived from alignment at CM002467.1:300202..301794- (Nannochloropsis gaditana)
ATGGTCAACCCTGCAGACCTGAGCGTTCCTGCCGGCGGGGACCCCCCGGT
CTTTGACGTGGCGGCCGCCTTCCAGGGCCTCTGCGACCGCTCCAATGAGA
TGTCCGAGGAGAAATTCATGGCCACGGTCGAAGCCTTGGAGCCCTGGTTG
GTCCCCGATATCATCGACTTTCTGGTCGCCAAGATCGCGGGCTTCGGGAA
GGAGCGCGAGCCGGCCATCTCCCTCTTGACCAAGCTGGATGCGGCCTTCG
TCCGCCGCAAGCTCCCCGACATCCTCCAGCCCGTCATGAACATGTGCACA
GACACCTCCAAGAAAGTGCGCGAGCTCTCCCTCAAGTGCCTCGAGCACCT
GGTGCAGACGAACGGGAATTCGGACTTGGACAGGGTCATCCCGGGCCTGG
TGCAGGCTCTCAAGGACCCGAACCACACGGTGCAAGCCATCGACGACCTG
GCCTCGTGCGTCTTCGTGCAAGACGTGGAGGCCCCCGCCCTGGCCGTGAT
CATGCCCATTATCCGCCGCGGCCTCCGCCACAAGCAGACGGAGATCCAGC
GCAAGTCCTGCGTGATCCTCGACAACGTCTGCCGCCTGGTCGACGACCCC
AAGGAGCTCTCCATCGCCATCCCGGAGATCCTGCCTTTGGTCAAGTCCTG
CGCCGAGAATATCTCCAAACCGGAGGCCCGCGAGGTGGCCAACCGGGCGC
TCAAGACCATCCTCGACCACTACGACGAGAAGCTGGTTTTGCGGAAGTGG
AGCGTGGAGGAGGTGACGGCCATGATCAAGAAGCACGGGGAGCCGACCGA
GCACATCGTCAAGTGCACCAAGAACCTGTGCGACGCCTATCATTTCGAGA
AGAAGGACTGGGAGCGCGTCTACGGCCAGAAGCATGCGGAGCTGTGCGCC
AAAGTCCTGAACGACTGCGAGATCTTGGCCAGCCCCAACACGATCATCTT
CGAGGACACGGAGGAAGGGCAGGACCTGTACAAGGGCGAGTTCTCTCTGG
CCTACGGGACCCTCACCCTCCTGCGCAAGACGCGGCTGCACTTGAAACGC
AACCGCTTCTACGGCCTGCTGGGCCCCAACAACTGCGGGAAGACGACGCT
GATGCGCGCCATCGATCACGAGCAGATCGAGGGCTTCCCCAAGAAGACGG
AGCTGAAGACCCTCTTCGTCGAGCATGAGATCGAGGAGCGGGAGGTGGGC
GAGGACGAGACCGGATACCCGATCTTTAACACGGATCTGTCGGGGACGGA
CTGGGTGGTGGACTACTGCAACAACGTGGTCAAGCTCCTGCCTGCCATCA
CCACGGAGGCGGCGGCGGCGGCCATGGGGGAGATGGGCTTCGGGAAGGAC
CGCGCGGCCGATGCCGACATGCCCGTGACCACGTACTCGGGTGGCTGGAA
GGTGAAGATGCAGCTTGTGGCGGCGAAGCTCATAAACACGGACTTGCTCA
TGCTGGACGAGCCCACGGGGCACTTGGATGTGACCAATATTGCCTGGCTG
AAAGGCTGGCTTAAGTCCTTCTTGCGGGGGGGGGCTCCATCATCACCACC
TCCCACGACTCGGAGTTCTTGCAGGAGATGTGCACGCACGTGA
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Synonyms
Publications