|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100076g16.8806.mrna |
| Orig protein id | gnl|cribi|Naga_100076g16.8806 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:284300..287729 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5983 ID=rna5983|Name=rna5983|organism=Nannochloropsis gaditana|type=mRNA|length=1881bp
GAGTGTTACACGTGTACAAAATACCATACTTTCGGATGTGTTGCTTATCA
TTGAGCCTCTATCGTTGACTTACACCAAATAGGGATCATCGCTTCATTCA
CGTAGGCAAAGCACTTTTTCTTGTTCATCTTCTCCGCAACCAAAGTCACC
AAAGCAAACTATGAGCAGCACACAAACTTCGCAAGCCAACAAGCGGCTGG
AGCACCTTAGTGGACATCTGGTCAAAAAGACTAGCAGGCCGGGATTCCTC
GGGGGGGACGTTGTGGTCGTCTCGGCATTGCGCACTCCGCTATGTAAGGC
TAAGCGTGGGGCTTTCAAGAGCACCACCACGGACGACCTACTGGCCCCGG
TATTGGAGGCGGTGGTGAAGCAGTCTGGCGTCGACGCAGCCACGCTTGGT
GATATTGTTGTGGGTAACGTCCTACAACCTGGTTCTGGAGCGGTGGGTGC
GCGTATGGCTCAATTTTATGCCGGGATCCCGTATCAGGTACCCCTTTGCA
CGCTGAACCGTCAGTGCTCCTCGGGCCTCCAGGCTTTCCTCCAGGTGGCT
GCCAGCATCCAGTCCGGCCTCTACGAGGCGGGCATTGCCGGCGGCGTGGA
GAGCATGTCCCTGACGGATATGAGTACCTCGGTGCCCGATGTAAATTTCG
AACGGGTCAGCGAGAACGCGCTCAGCAAGGACTGCACCATCCCTATGGGC
CAGACCAGTGACGAGGTGGCGACCCGCTTCCAAGTTTCGAGGGAAGATCA
GGATCGGTTTGCGGCGGCTTCGCACGCCAAGGCGGAGGCGGCGGTGAAGG
CAGGCAAGTTCGCCGAGGAGATCGTGCCCGTGCGGGTGTCGAGCGGGGGG
GAGGACGGGGGGGAGGACGAGGTGACGGTGGTGAGGGAGGACGAGGGCAT
TCGACCGGGCACGACGCCTGAGAAGCTGGGAGGCCTGCGGTCATCCTTCT
CGGAGGGCGGGAGCACCACGGCCGGAAACAGCAGCCAGATGACGGACGGA
GCGGCGGCCGTGCTGGTGATGAGTCGGGGGGCGGCCACGGCGCAGGGAAT
GCCCGTGATGGGCGTTTTGAGGGGGGCCGCGGTGGTGGGGGTACCCCCTG
ATATCATGGGGATTGGCCCCGCCGTGGCCATCCCGGCCGCCCTCGCCCAG
GCCCGGCTGCGGGTGGAGGATGTGGATGTGTTTGAGATAAATGAGGCCTT
TGCCAGCCAGTGTCTGTACTGCGTGCGCGAGCTCAAGATCCCGATGGAGA
AGGTAAACCCGAACGGGGGGGCCATTGCTCTCGGTCATCCCTTAGGGGCG
ACGGGGGCCAGGCAAATCGCCACGCTGCTGCACGAGATGCGACGGACGAG
AAAGCGATGGGGGGTTGTGAGCATGTGCATCGGCACGGGGATGGGCGCGG
CGGCGGTGTTTGAGAACGAGGCGGCGGCAAACTGAGTCAAGCCGGGGGGG
AATGGCCGAGCAGACGGGAGGGTGGGGGGGAGATGCGTGGGAGAGGAGGA
GGCACGGGTGCGGAGATGGGAGGCTGTAAAGGAGGATTGGAAAGGAACGA
GATTGTCCTCCAGGGAGGTCGTGGCCGAGGGGGATGGCCGGACGGGTTTT
GATCGGTGTTTGGGGGTAGGCTCTCACCAGTCGAGATGTTCATGGGACGG
TGACCTAGGGCAGACGTGGTGTGGGGAGAAGGTGGCGACCGTGTGCACTC
AAGAGGAATGGAGTGCTTACTGCGTCGTCAGACCCACCAAGACACCCCCA
CCAAGAAGTAAGGAGACCAAGGTCAAAGTGTCCGAGTCCGTCGATCGAGA
ACTTCTGCAAATGACAAAATTGCTTCCCTTTAAAACGTTGTTTATGCGCG
CAAACATTGTTAACATGTTCCCCGCCTTTGG back to topprotein sequence of rna5983 >rna5983-protein ID=rna5983-protein|Name=rna5983|organism=Nannochloropsis gaditana|type=polypeptide|length=632bp
MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAV
VQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLT
SLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADE
GKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEE
AHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNART
AEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPV
PAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSV
VAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGEL
RDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGH
RRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLP
SMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARP
AEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADA
GPRLPLAAWRDAEAHSISHTATSVSSSRRLWV back to topmRNA from alignment at CM002467.1:284300..287729- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5983 ID=rna5983|Name=rna5983|organism=Nannochloropsis gaditana|type=mRNA|length=3430bp|location=Sequence derived from alignment at CM002467.1:284300..287729- (Nannochloropsis gaditana)
AACGGCGCTCGGAGGAAACGAGGCCACGAAAGTCCTTTCATTTAATGGCT
AAGAGCTTCATATTTTGTTAAGGGCTTGAATTGATTCGTCGTATTCACAA
GATTACATTTTGTTTGCAATATTTACCTCTCCTTGAATGCATACTAAGGA
CCTGGCATGGTGAGAGGTTAGCCGTTGAAGAGACAAGCTAAGAAATTCTG
TGGCCGGTAGTGTTGCCGGTCAATTCTTTCTTTCACATCTTTTGTAATGG
AATATATATCCTGGCACTTTTTGGGGAGTTTTGGCACAGTTGCTGCCGTT
TTTCGAATGGTTTTTAGGACGGAATAAGCTGGTTCCAAGAGGGCACGGGA
TCCATTTCTCCTACCCTCTCAAGTATACAAAGATATAGAATATGGCATAT
CTTTGACTATTATAACAGTTAATGGTGACACATTGTAGGAAAAGAAGCCG
GCCTCCAGCAATGTGTGAAGATTTGTCGTAGGTAAGCTCGCGATTCCATC
CTCAACACCGATCTTTGGGGGGGAAACTTTGCACTAATTTGCTAAAGAGA
AATAGCCATCCGCTCGTTCTCTCTTCTCGAAAGGAATAGGTAGTATGGGA
AAAGGCCCCGGTCATCTAAGGCGGGGTGATGAAGCAGGCATGGTACGTGT
TTATAAAAAAAGAGATGGATTTGAGTGAGTTGGCTCGGGAACCTCTCGTC
TCTCACAGAACCAAAACCACGAAAACGTCAACCGGAGAAGGACAACTCTA
ATCGTCCGCTTTCTTCCTGACTTCAAAATCTCCCTCTCATGCCTGTTCCC
ACTTTTCCCCCAGCCTCCCGGTATTCCTCGAGACGTCTCCATGTCCGGGC
CCCGCCCCAATAGCGACAACATCGGGCCATCATGCTCGCCACTGGTGCCA
GTGGCTACCCCTGTGGACCTTCATACGTTGTGGGAGTGGACCATGGCTGT
CTCCTCTTCCTCATCACGCCGGAAACGTTTCCACGCCGTCGTGCAGGGGC
TCGCGGGCGAGAGGGACGAGGCTCTCCACAGGCTCCACGCCGCCGTGTGC
GAGCTCCGGCGGCTACAGCGTGTGGAGAGGGAAAGCAAGAGCTTGCGAGT
CGGCCTCCGGTCGTCGGAGAGAATCCGAGGACAGCTGACATCCTTGCTGG
AGGAGTGCGAGCGCTCCTGGGTCTTGTCTCCTCCTCCCTGCGCCTGTGCC
CGCAAGGACTTTCCTCCGGCTGGCGTCGTGATGGGAGGCGGTCGAGGCGG
GGGGAAAGAGAGCGCCAAGCTGGATGAGGCGGCGGACGAGGGGAAGAAGG
AAGAGCCGAAGGAGGAAAAGGGGAAGGAGAGGGAAGAGAAGAAACTTGCG
GTGGAGAAGGAGGACGAGGAGGAGGAGCAGCAGCAGCAGCAACAGCAGCA
ACAGCAGCAGCAGCAGGAGGAGGAAGAAGAAGAGGAGGAAGCGCATACAG
ACGACGGTGGGGAGAAGGGGGAAAATGAAGACAAGAAAAGAGAAGAAGTT
TTCCGGGGGCACTGGCGGGAATGGGGCCTGACGGAAAGCGAAGAGGGCGG
CTCTCCTGAGGCCGGCCTGGGGGCGAAGAACGCCAGAACGGCAGAAGCCT
CCTCCTTCCCATCCTGCGGGGCAAGCGGTAGCACCCTGACCACTGCCGCC
AGCATCTTGTCGGACGCAGAGGGCTTGCACGCGGTCTTCTGTCGGTATTC
CAGCCTGCAACAGCACCGCTCCAGCGCCCACCGTCCCGTCCCCGCTGCCC
TGGTCGCCAAGCCTTCTCCTCCTTCCTCCTCCGGCATGCCCCCCTCCCTC
TTCTCCTCCCGGGGGGAGCTGCTGGCAGCGGCGAACGAAAGGAGGAAACA
CGCGACAGAGACCAAGAGTGCGGTGCTTCATAGCTCGGTGGTAGCTCACG
TGCCTGAAAATAGAGGGGAGGTGACGAGGAGGAAAATGGGCGCCTTAGCA
GGAACAGAATCCGAGGATCGCGTTGTAAAGGCCGGCAGCAGGGGGGATGT
CGAGGGGGAGGAGACCGGCAGTCGTCCTGGGGGAGAGCTGCGGGACGATC
CTGGCATGGGGCCCCTCGATGGGCGGAGGGCAAAAGGCGGGAAGCAGGGA
GAGCAGAAGCCAGAGACGAAGACGAGGACGACGCAGGAAGACAGCAAGGA
CGCGCTTTTGGGGTCCAGGTCTCTGGTGCATGTCGGTCATCGCAGACAGA
AATCCTCCCAGGCCTCCGCCCGCCTCTTTCCTGCGGGCACAGAGACGGCG
TGGGGCAGGCGTGTGGGACCCCGACCCACCAAAGAGGAGCTCTCCTGGCA
CCAATATTGCCCTGAGACGCCTTGTCGACGGACGCTTCCATCCATGGTAG
CGCCGTCCGCCCCCCACTCGCCCTCCTTCTTGGCCCTGGCCCCCCTCTTG
CCCGACACCCGGGCGGGCAGACCCAGGAGGGGGAAGGGAACGGGGAGGAA
GGAAGGTAGCCGTCAGAAGGGTTATGCGGGTGCTAGGCCAGCGGAAATGG
GTGGGGTGAGCGGGAAGAGCGTCGATAAGAAGACAAGGACGAGAGGAGTG
ATGGCTCCAGCCACGGCAGGCTCGGTGACCTCCACACGCTTGCTCTCGGC
CCGTGACACGTTAAAAATCTCCTTCCCTGACGCGGACGCCGGACCCCGCC
TGCCTCTTGCGGCCTGGCGCGATGCGGAGGCTCACTCTATTTCTCACACT
GCCACCTCCGTCTCCTCCTCGCGGCGTCTGTGGGTCTAATTGAGGCGATC
AAGGGGAGGGCAAGGAGGAAGTAAGCTAAAGATATGTGTACCCGGGACGT
GGGAAACTTTGAATAGAATTGGGGAGGCCGAGAAGGAGGAAGGATCTGAA
TTGTTTCATTCCTGCGACGTGGATTACGTAATCGATTAATTGAGCGAGGG
GAAGGTACAGTGTGGAGGTAGAGGCGAAGGTGAGTGTGGGTTGCCAAAGG
GTCTACCCATCACCCAAATGGAAGCGGATTCTTAATTTTTAAATACCTGC
CACTGTCCGCCGGCACCAGTAGCGAAAGAAGACGAGAGGAGATAGATTCT
GACATGATTGATTGAAAGCAGGTAACTTTGACATTCGACAAGACGACGAT
ACTGCGGCCAGCGCCGGATGCGTCGGACTGCACCCAGTCGACGATATTTA
GAAAGCATTTTTAGTAATGCCCATTCCAATTCAAATACCTGCCCCGTATG
AGATTTACTTGGAGTGATGCTTTGTGAAGCTATCGCAATGGCGTCTGTAG
AAAGCACTGCGAATTAGAGGTTCGATTTTTGACTAAGCAAGAATGTGAAG
GAGTGAAAACTCAAACTCAAGTTGTTTGGGAGGGTGCTCCAGACTTTCCC
AAAGGCGGGGAACATGTTAACAATGTTTGCGCGCATAAACAACGTTTTAA
AGGGAAGCAATTTTGTCATTTGCAGAAGTT back to topCoding sequence (CDS) from alignment at CM002467.1:284300..287729- >rna5983 ID=rna5983|Name=rna5983|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at CM002467.1:284300..287729- (Nannochloropsis gaditana)
ATGTCCGGGCCCCGCCCCAATAGCGACAACATCGGGCCATCATGCTCGCC
ACTGGTGCCAGTGGCTACCCCTGTGGACCTTCATACGTTGTGGGAGTGGA
CCATGGCTGTCTCCTCTTCCTCATCACGCCGGAAACGTTTCCACGCCGTC
GTGCAGGGGCTCGCGGGCGAGAGGGACGAGGCTCTCCACAGGCTCCACGC
CGCCGTGTGCGAGCTCCGGCGGCTACAGCGTGTGGAGAGGGAAAGCAAGA
GCTTGCGAGTCGGCCTCCGGTCGTCGGAGAGAATCCGAGGACAGCTGACA
TCCTTGCTGGAGGAGTGCGAGCGCTCCTGGGTCTTGTCTCCTCCTCCCTG
CGCCTGTGCCCGCAAGGACTTTCCTCCGGCTGGCGTCGTGATGGGAGGCG
GTCGAGGCGGGGGGAAAGAGAGCGCCAAGCTGGATGAGGCGGCGGACGAG
GGGAAGAAGGAAGAGCCGAAGGAGGAAAAGGGGAAGGAGAGGGAAGAGAA
GAAACTTGCGGTGGAGAAGGAGGACGAGGAGGAGGAGCAGCAGCAGCAGC
AACAGCAGCAACAGCAGCAGCAGCAGGAGGAGGAAGAAGAAGAGGAGGAA
GCGCATACAGACGACGGTGGGGAGAAGGGGGAAAATGAAGACAAGAAAAG
AGAAGAAGTTTTCCGGGGGCACTGGCGGGAATGGGGCCTGACGGAAAGCG
AAGAGGGCGGCTCTCCTGAGGCCGGCCTGGGGGCGAAGAACGCCAGAACG
GCAGAAGCCTCCTCCTTCCCATCCTGCGGGGCAAGCGGTAGCACCCTGAC
CACTGCCGCCAGCATCTTGTCGGACGCAGAGGGCTTGCACGCGGTCTTCT
GTCGGTATTCCAGCCTGCAACAGCACCGCTCCAGCGCCCACCGTCCCGTC
CCCGCTGCCCTGGTCGCCAAGCCTTCTCCTCCTTCCTCCTCCGGCATGCC
CCCCTCCCTCTTCTCCTCCCGGGGGGAGCTGCTGGCAGCGGCGAACGAAA
GGAGGAAACACGCGACAGAGACCAAGAGTGCGGTGCTTCATAGCTCGGTG
GTAGCTCACGTGCCTGAAAATAGAGGGGAGGTGACGAGGAGGAAAATGGG
CGCCTTAGCAGGAACAGAATCCGAGGATCGCGTTGTAAAGGCCGGCAGCA
GGGGGGATGTCGAGGGGGAGGAGACCGGCAGTCGTCCTGGGGGAGAGCTG
CGGGACGATCCTGGCATGGGGCCCCTCGATGGGCGGAGGGCAAAAGGCGG
GAAGCAGGGAGAGCAGAAGCCAGAGACGAAGACGAGGACGACGCAGGAAG
ACAGCAAGGACGCGCTTTTGGGGTCCAGGTCTCTGGTGCATGTCGGTCAT
CGCAGACAGAAATCCTCCCAGGCCTCCGCCCGCCTCTTTCCTGCGGGCAC
AGAGACGGCGTGGGGCAGGCGTGTGGGACCCCGACCCACCAAAGAGGAGC
TCTCCTGGCACCAATATTGCCCTGAGACGCCTTGTCGACGGACGCTTCCA
TCCATGGTAGCGCCGTCCGCCCCCCACTCGCCCTCCTTCTTGGCCCTGGC
CCCCCTCTTGCCCGACACCCGGGCGGGCAGACCCAGGAGGGGGAAGGGAA
CGGGGAGGAAGGAAGGTAGCCGTCAGAAGGGTTATGCGGGTGCTAGGCCA
GCGGAAATGGGTGGGGTGAGCGGGAAGAGCGTCGATAAGAAGACAAGGAC
GAGAGGAGTGATGGCTCCAGCCACGGCAGGCTCGGTGACCTCCACACGCT
TGCTCTCGGCCCGTGACACGTTAAAAATCTCCTTCCCTGACGCGGACGCC
GGACCCCGCCTGCCTCTTGCGGCCTGGCGCGATGCGGAGGCTCACTCTAT
TTCTCACACTGCCACCTCCGTCTCCTCCTCGCGGCGTCTGTGGGTCTAA back to top
|