EWM24698.1, cds5968 (CDS) Nannochloropsis gaditana

Overview
NameEWM24698.1
Unique Namecds5968
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:284991..286889 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24698.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g16.8806.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:284991..286889 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24698.1 vs. NCBI_GenBank
Match: gi|585106225|gb|EWM24697.1| (hypothetical protein Naga_100076g16 [Nannochloropsis gaditana] >gi|585106226|gb|EWM24698.1| hypothetical protein Naga_100076g16 [Nannochloropsis gaditana])

HSP 1 Score: 1263.83 bits (3269), Expect = 0.000e+0
Identity = 632/632 (100.00%), Postives = 632/632 (100.00%), Query Frame = 0 
Query:    1 MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADAGPRLPLAAWRDAEAHSISHTATSVSSSRRLWV 632
            MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADAGPRLPLAAWRDAEAHSISHTATSVSSSRRLWV
Sbjct:    1 MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADAGPRLPLAAWRDAEAHSISHTATSVSSSRRLWV 632
[Close]
BLAST of EWM24698.1 vs. NCBI_GenBank
Match: gi|553185780|ref|XP_005854305.1| (hypothetical protein NGA_0171200, partial [Nannochloropsis gaditana CCMP526] >gi|422294757|gb|EKU22057.1| hypothetical protein NGA_0171200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1250.34 bits (3234), Expect = 0.000e+0
Identity = 626/632 (99.05%), Postives = 628/632 (99.37%), Query Frame = 0 
Query:    1 MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADAGPRLPLAAWRDAEAHSISHTATSVSSSRRLWV 632
            +SGPRPNSDNIGPSCSPLVP ATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAAL+AKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMA ATAGSVTSTRLLSARDTLKISF DADAGPRLPLAAWRDAEA SISHTATSVSSSRRLWV
Sbjct:   31 LSGPRPNSDNIGPSCSPLVPAATPVDLHTLWEWTMAVSSSSSRRKRFHAVVQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLTSLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADEGKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEEAHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNARTAEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPVPAALIAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSVVAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGELRDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGHRRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLPSMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARPAEMGGVSGKSVDKKTRTRGVMASATAGSVTSTRLLSARDTLKISFSDADAGPRLPLAAWRDAEARSISHTATSVSSSRRLWV 662
The following BLAST results are available for this feature:
BLAST of EWM24698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106225|gb|EWM24697.1|0.000e+0100.00hypothetical protein Naga_100076g16 [Nannochlorops... [more]
gi|553185780|ref|XP_005854305.1|0.000e+099.05hypothetical protein NGA_0171200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5983rna5983Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications