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Properties
| Property Name | Value |
|---|
| Product | major facilitator superfamily domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100173g6.4681.mrna |
| Orig protein id | gnl|cribi|Naga_100173g6.4681 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1495728..1498714 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna598 ID=rna598|Name=rna598|organism=Nannochloropsis gaditana|type=mRNA|length=393bp
ATGCATGACCCAAACAAGCGGCACACCTGGACGGGAGAGGAGGACCGGCG
GCTGAAGGAGCTGGTCCGAACGGTGGGCCCTCGGAAATGGGGCATTATAT
CAACCCATTTCAAGAACCGCAATGCAAAGCAATGTCATCAACGCTGGCAC
TACGTGCTCAAGCCATCCATCACCCGTGAACCCTGGACGGAGGAGGAAGA
TAATGCGATTATGCAATATCAGATCCAGATTGGGAACAAGTGGTCACAAA
TTGCCAAATTTCTTCACGGTCGAACAGGATATGCCATTCGAAATCGGTAT
AACTTTCTGTCTAAACGACAATTAGAGGAAGCCCAGCGACATTTTCGACC
GTTTTTAGGACCGCCCTTGTCCTTACACATACAGCCAGCCTAA back to topprotein sequence of rna598 >rna598-protein ID=rna598-protein|Name=rna598|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MPSPDPTNQNPVKDAALSQGQPSLRTAHTTWGGSYIMPKAPPSLSGPNSA
AEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLA
RIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEV
LMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKAC
VLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRL
ACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTIL
CFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEMEQVE
EEEDGQSEDKGKSASGEGSWRGWRAYFQGLCNLDFFVWLVGYEGKGRVCE
FDGLSHSKPSSCSLSFSRWPHAPCTSPSSSFRPLRSSICRQIIISARDKQ
PLPPHSSTFLEFSLAHFWGDVWTENWAKGKEMSGYACLADLGLPDLC back to topmRNA from alignment at CM002455.1:1495728..1498714- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna598 ID=rna598|Name=rna598|organism=Nannochloropsis gaditana|type=mRNA|length=2987bp|location=Sequence derived from alignment at CM002455.1:1495728..1498714- (Nannochloropsis gaditana)
GCACACAGGTTTCAAGGCGGCGGAGGAGGTTGGCTGCGCTATCCTTTCGG
ACATCGTTTTCCTGATATTGCGTTTCTCAGTTTCCATATGCCCTCGCCTG
ATCCGACAAATCAAAACCCAGTCAAAGATGCAGCTCTTTCTCAAGGACAA
CCTTCTCTTCGTACGGCGCACACCACATGGGGCGGCTCGTACATTATGCC
AAAGGCGCCTCCTTCACTTTCTGGTCCTAACTCTGCCGCAGAGGGAGGGA
CAAGTGCGTCAAGGATAGGAAGTCAACTTCGCTCTTCTTTCATAAATGAG
ATCAATACGTTGACAAAGCCCACATTGAGCCGTTTGGCAGTTTCTTACGT
GGGTTCCGCTCCGTTTTCTGACCCGCCGGGCCTCGCACGGATCCCCACAA
CTACGGAATTGTTCCCTGAAGGAGTGAAGGGCAACAAAGAAGCTCAAGCG
CTCTGTGTACCCGGAACCGCAGGGAATGTTTTCATCCTAGGTTGCGCATG
CTTCATTATGGTGGGCAGTGTTGCGGCAAAAGAAGTCTTAATGGCAGTCT
CCGTGCAGGTAAAGTGGATTGCGAAGGAGGACTGAAGGGAGCAAGCAAGA
TTTAGGAAATGCCGGCTTTCGGCCGTGCTGCGATATTCAGAGATTTTATC
TGTGTGGACATGTCTGGTCGTACCGTTCAGCAGTCAATGCCATGGGTCCA
GCGAAGATCAAGGCTGATGTTTTACTCATGTTGCCACCAACAGCTCATGG
CGCACATGCCTATGTCCATAAAGACCTACGGGGTAGTCTCCGGCTTACCC
TCCCTCTCCTCCATATTCGCCTGTTTGGTCGGAGGTCCGGTGATTGATGC
GATAGGGGCCGATAAAGCTTGCGTTCTCTTCACTTTCATCGTCTTGCTAG
GTAACGCCATGGCCACTGTTTCCGTTAGCCTTCGGTAAGTCGCGCGGCCT
ATCTATATTCTTTTCAAACGCGCCTCACGTAGTTCTGTGGTGATAGAGAA
CAGCGTCAATTGTGTCCGAAAATATACCGTTACTAACAAAATGGTTTGTC
AATGGATCATGCTCGCTGCTTCTGCACGCAGTGAACTTAGTTGCGGGCAT
GTAGGAATCGAACAAGCCGGAGCATTCAGCCCAAGCACGTTGTACTATAC
TCTTTCCCACTTTTCACCCCTTCATAGATCCCTATCCCTCCTTTTGGTGG
GCCAAGTTGTACTGGGTGTGGGAGAGAAACCCTTGGGCTCGGGGCAGCTT
GTCTTTATCCGCCTGGCGTGTGATCCCGCCAAAGTCGGCTTTTACTTTGC
CGTAGCCTCCGCCGCATATCGGGCTGCTTCTTTCGGCACTTTTATCCTGT
CACCCTTGGTAGCAGAGTCATCAACGTACGGCTTTCAAGCGAGCATGTGG
ATGGGCACAATTTTGTGTTTTTTATCCTTCCTAAGTGCCTTTCCCATGCT
GGGAAAATTGAAACATCTAGAACCCTTCCTGAAGGCGGCTCCTGTAGTGG
TGGGGGAGGAAGAGGGGGAAGAGGTGATCTTGATGAAGAGTAATTTAGAG
ATGGAGCAAGTGGAAGAGGAGGAGGACGGACAGAGTGAAGACAAGGGGAA
GAGCGCGAGCGGGGAAGGCTCTTGGCGGGGATGGAGGGCCTACTTCCAGG
GTCTTTGTAACCTTGACTTTTTCGTTTGGCTGGTAGGATATGAGGGCAAA
GGGAGGGTATGTGAATTTGACGGTCTCTCTCATTCCAAACCTTCCTCTTG
CTCGCTCTCCTTTTCTAGGTGGCCGCATGCGCCCTGTACATCACCTTCTT
CGTCCTTCAGACCTTTGCGGTCGAGTATCTGCAGACAGATCATCATCTCA
GCGCGCGACAAGCAGCCTTTGCCACCTCACTCTTCGACGTTTTTGGAATT
TTCCTTGGCCCATTTCTGGGGAGATGTGTGGACCGAGAACTGGGCAAAGG
GGAAGGAAATGAGTGGGTATGCATGTCTTGCCGACCTTGGCCTGCCGGAT
CTATGCTAGCTTGGGGTTCAGGATTCATGGCGGTGGGGCTCTTGTTACCA
ATTGTTGACCCGCGCAGGTGGGTGCGGAAGGAGGCTAGGGATCTTGTGCG
GGAAGGAAAGAGAAGAGCAAATCAGGGTAGAAGGAGGAAGTCATGGAGAG
GCCTTGGGGACACTTTTGTCATTACTCTCTTCGGATCTGCATCCCATTTT
CTGCCCCTTTGCTATTTTCAATATATGTAGTTGAATTGTGGGGATTTTTC
TCTTCTGTCTATTCAACCTTTTTTCTCCTCCTCTTCCTGGATCTTTTCCC
TCACTTCCTGACGGCTATTCCTTCCTGATGCTTCCTGGTCCCTTTTTCAG
CTGGCTAGTTGGCTTTGTCCTCATTTCCTTTGGATTTGCCTTAGCCTCCG
CCGCAATATGGCCTTTGATGCCGCTCTTCGTACCGTTGGACAGTCTGGGG
TTGGCTTTAGGGGTAACCACATCTCTGTTGGAAACAGGTGAGGAAAAAGG
AAGACGATAGTCGTGGGCATGAAGGCAATTGGGCTTATAAGCTTCGAAAT
TTGTATTCAGGTACTCTTTGTAAATTGTAACGTGATCCTTTCGTGCATGA
TGGCAGGTATATTGGGGGTGAACGTCTTCATCGGACAAATTCTCGGCGCG
GGCCATGGATATCAACACGCCGTGTTTCCTATCTTCCTAAGCTTGATCAT
GCTAACATTAGCAATGACAGGGATATTATTCCCGCGTCTCAAAGTCAAAG
TAGAGGCAGGTAGAAGAGAAAGTGAAGCTAGAAGTGAGGGAGCGAAAGAA
GATAGGTTTGGCTAGAGCGAAACAGGAAATTAAATGTAACGAAATGACCA
CTTCCAATCGAGTCCGAAATATTCTTACTCATTCCTCAAATGCGAAAAGG
AGCTTTATAAAAGTGAGAAAAATTTAAGAGTTTTTGATAAGATACAAAAT
TACTTTGTCCTTCGGTATGACGTTCCCTATAGCTGCC back to topCoding sequence (CDS) from alignment at CM002455.1:1495728..1498714- >rna598 ID=rna598|Name=rna598|organism=Nannochloropsis gaditana|type=CDS|length=4482bp|location=Sequence derived from alignment at CM002455.1:1495728..1498714- (Nannochloropsis gaditana)
ATCCCTATCCCTCCTTTTGGTGGGCCAAGTTGTACTGGGTGTGGGAGAGA
AACCCTTGGGCTCGGGGCAGCTTGTCTTTATCCGCCTGGCGTGTGATCCC
GCCAAAGTCGGCTTTTACTTTGCCGTAGCCTCCGCCGCATATCGGGCTGC
TTCTTTCGGCACTTTTATCCTGTCACCCTTGGTAGCAGAGTCATCAACGT
ACGGCTTTCAAGCGAGCATGTGGATGGGCACAATTTTGTGTTTTTTATCC
TTCCTAAGTGCCTTTCCCATGCTGGGAAAATTGAAACATCTAGAACCCTT
CCTGAAGGCGGCTCCTGTAGTGGTGGGGGAGGAAGAGGGGGAAGAGGTGA
TCTTGATGAAGAGTAATTTAGAGATGGAGCAAGTGGAAGAGGAGGAGGAC
GGACAGAGTGAAGACAAGGGGAAGAGCGCGAGCGGGGAAGGCTCTTGGCG
GGGATGGAGGGCCTACTTCCAGGGTCTTTGTAACCTTGACTTTTTCGTTT
GGCTGGTAGGATATGAGGGCAAAGGGAGGGTATGTGAATTTGACGGTCTC
TCTCATTCCAAACCTTCCTCTTGCTCGCTCTCCTTTTCTAGGTGGCCGCA
TGCGCCCTGTACATCACCTTCTTCGTCCTTCAGACCTTTGCGGTCGAGTA
TCTGCAGACAGATCATCATCTCAGCGCGCGACAAGCAGCCTTTGCCACCT
CACTCTTCGACGTTTTTGGAATTTTCCTTGGCCCATTTCTGGGGAGATGT
GTGGACCGAGAACTGGGCAAAGGGGAAGGAAATGAGTGGGTATGCATGTC
TTGCCGACCTTGGCCTGCCGGATCTATGCTAGCTCATGGCGCACATGCCT
ATGTCCATAAAGACCTACGGGGTAGTCTCCGGCTTACCCTCCCTCTCCTC
CATATTCGCCTGTTTGGTCGGAGGTCCGGTGATTGATGCGATAGGGGCCG
ATAAAGCTTGCGTTCTCTTCACTTTCATCGTCTTGCTAGGTAACGCCATG
GCCACTGTTTCCGTTAGCCTTCGATGCCCTCGCCTGATCCGACAAATCAA
AACCCAGTCAAAGATGCAGCTCTTTCTCAAGGACAACCTTCTCTTCGTAC
GGCGCACACCACATGGGGCGGCTCGTACATTATGCCAAAGGCGCCTCCTT
CACTTTCTGGTCCTAACTCTGCCGCAGAGGGAGGGACAAGTGCGTCAAGG
ATAGGAAGTCAACTTCGCTCTTCTTTCATAAATGAGATCAATACGTTGAC
AAAGCCCACATTGAGCCGTTTGGCAGTTTCTTACGTGGGTTCCGCTCCGT
TTTCTGACCCGCCGGGCCTCGCACGGATCCCCACAACTACGGAATTGTTC
CCTGAAGGAGTGAAGGGCAACAAAGAAGCTCAAGCGCTCTGTGTACCCGG
AACCGCAGGGAATGTTTTCATCCTAGGTTGCGCATGCTTCATTATGGTGG
GCAGTGTTGCGGCAAAAGAAGTCTTAATGGCAGTCTCCGTGCAGATCCCT
ATCCCTCCTTTTGGTGGGCCAAGTTGTACTGGGTGTGGGAGAGAAACCCT
TGGGCTCGGGGCAGCTTGTCTTTATCCGCCTGGCGTGTGATCCCGCCAAA
GTCGGCTTTTACTTTGCCGTAGCCTCCGCCGCATATCGGGCTGCTTCTTT
CGGCACTTTTATCCTGTCACCCTTGGTAGCAGAGTCATCAACGTACGGCT
TTCAAGCGAGCATGTGGATGGGCACAATTTTGTGTTTTTTATCCTTCCTA
AGTGCCTTTCCCATGCTGGGAAAATTGAAACATCTAGAACCCTTCCTGAA
GGCGGCTCCTGTAGTGGTGGGGGAGGAAGAGGGGGAAGAGGTGATCTTGA
TGAAGAGTAATTTAGAGATGGAGCAAGTGGAAGAGGAGGAGGACGGACAG
AGTGAAGACAAGGGGAAGAGCGCGAGCGGGGAAGGCTCTTGGCGGGGATG
GAGGGCCTACTTCCAGGGTCTTTGTAACCTTGACTTTTTCGTTTGGCTGG
TAGGATATGAGGGCAAAGGGAGGGTATGTGAATTTGACGGTCTCTCTCAT
TCCAAACCTTCCTCTTGCTCGCTCTCCTTTTCTAGGTGGCCGCATGCGCC
CTGTACATCACCTTCTTCGTCCTTCAGACCTTTGCGGTCGAGTATCTGCA
GACAGATCATCATCTCAGCGCGCGACAAGCAGCCTTTGCCACCTCACTCT
TCGACGTTTTTGGAATTTTCCTTGGCCCATTTCTGGGGAGATGTGTGGAC
CGAGAACTGGGCAAAGGGGAAGGAAATGAGTGGGTATGCATGTCTTGCCG
ACCTTGGCCTGCCGGATCTATGCTAGCTCATGGCGCACATGCCTATGTCC
ATAAAGACCTACGGGGTAGTCTCCGGCTTACCCTCCCTCTCCTCCATATT
CGCCTGTTTGGTCGGAGGTCCGGTGATTGATGCGATAGGGGCCGATAAAG
CTTGCGTTCTCTTCACTTTCATCGTCTTGCTAGGTAACGCCATGGCCACT
GTTTCCGTTAGCCTTCGATGCCCTCGCCTGATCCGACAAATCAAAACCCA
GTCAAAGATGCAGCTCTTTCTCAAGGACAACCTTCTCTTCGTACGGCGCA
CACCACATGGGGCGGCTCGTACATTATGCCAAAGGCGCCTCCTTCACTTT
CTGGTCCTAACTCTGCCGCAGAGGGAGGGACAAGTGCGTCAAGGATAGGA
AGTCAACTTCGCTCTTCTTTCATAAATGAGATCAATACGTTGACAAAGCC
CACATTGAGCCGTTTGGCAGTTTCTTACGTGGGTTCCGCTCCGTTTTCTG
ACCCGCCGGGCCTCGCACGGATCCCCACAACTACGGAATTGTTCCCTGAA
GGAGTGAAGGGCAACAAAGAAGCTCAAGCGCTCTGTGTACCCGGAACCGC
AGGGAATGTTTTCATCCTAGGTTGCGCATGCTTCATTATGGTGGGCAGTG
TTGCGGCAAAAGAAGTCTTAATGGCAGTCTCCGTGCAGATCCCTATCCCT
CCTTTTGGTGGGCCAAGTTGTACTGGGTGTGGGAGAGAAACCCTTGGGCT
CGGGGCAGCTTGTCTTTATCCGCCTGGCGTGTGATCCCGCCAAAGTCGGC
TTTTACTTTGCCGTAGCCTCCGCCGCATATCGGGCTGCTTCTTTCGGCAC
TTTTATCCTGTCACCCTTGGTAGCAGAGTCATCAACGTACGGCTTTCAAG
CGAGCATGTGGATGGGCACAATTTTGTGTTTTTTATCCTTCCTAAGTGCC
TTTCCCATGCTGGGAAAATTGAAACATCTAGAACCCTTCCTGAAGGCGGC
TCCTGTAGTGGTGGGGGAGGAAGAGGGGGAAGAGGTGATCTTGATGAAGA
GTAATTTAGAGATGGAGCAAGTGGAAGAGGAGGAGGACGGACAGAGTGAA
GACAAGGGGAAGAGCGCGAGCGGGGAAGGCTCTTGGCGGGGATGGAGGGC
CTACTTCCAGGGTCTTTGTAACCTTGACTTTTTCGTTTGGCTGGTAGGAT
ATGAGGGCAAAGGGAGGGTATGTGAATTTGACGGTCTCTCTCATTCCAAA
CCTTCCTCTTGCTCGCTCTCCTTTTCTAGGTGGCCGCATGCGCCCTGTAC
ATCACCTTCTTCGTCCTTCAGACCTTTGCGGTCGAGTATCTGCAGACAGA
TCATCATCTCAGCGCGCGACAAGCAGCCTTTGCCACCTCACTCTTCGACG
TTTTTGGAATTTTCCTTGGCCCATTTCTGGGGAGATGTGTGGACCGAGAA
CTGGGCAAAGGGGAAGGAAATGAGTGGGTATGCATGTCTTGCCGACCTTG
GCCTGCCGGATCTATGCTAGCTCATGGCGCACATGCCTATGTCCATAAAG
ACCTACGGGGTAGTCTCCGGCTTACCCTCCCTCTCCTCCATATTCGCCTG
TTTGGTCGGAGGTCCGGTGATTGATGCGATAGGGGCCGATAAAGCTTGCG
TTCTCTTCACTTTCATCGTCTTGCTAGGTAACGCCATGGCCACTGTTTCC
GTTAGCCTTCGATGCCCTCGCCTGATCCGACAAATCAAAACCCAGTCAAA
GATGCAGCTCTTTCTCAAGGACAACCTTCTCTTCGTACGGCGCACACCAC
ATGGGGCGGCTCGTACATTATGCCAAAGGCGCCTCCTTCACTTTCTGGTC
CTAACTCTGCCGCAGAGGGAGGGACAAGTGCGTCAAGGATAGGAAGTCAA
CTTCGCTCTTCTTTCATAAATGAGATCAATACGTTGACAAAGCCCACATT
GAGCCGTTTGGCAGTTTCTTACGTGGGTTCCGCTCCGTTTTCTGACCCGC
CGGGCCTCGCACGGATCCCCACAACTACGGAATTGTTCCCTGAAGGAGTG
AAGGGCAACAAAGAAGCTCAAGCGCTCTGTGTACCCGGAACCGCAGGGAA
TGTTTTCATCCTAGGTTGCGCATGCTTCATTATGGTGGGCAGTGTTGCGG
CAAAAGAAGTCTTAATGGCAGTCTCCGTGCAG back to top
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