EWM30075.1, cds598 (CDS) Nannochloropsis gaditana

Overview
NameEWM30075.1
Unique Namecds598
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1498157..1498627 -
Alignment locationCM002455.1:1497781..1497971 -
Alignment locationCM002455.1:1496706..1497537 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30075.1
Productmajor facilitator superfamily domain-containing protein
Orig transcript idgnl|cribi|Naga_100173g6.4681.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1498157..1498627 -
CM002455.1supercontigCM002455.1:1497781..1497971 -
CM002455.1supercontigCM002455.1:1496706..1497537 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|585112708|gb|EWM30075.1| (major facilitator superfamily domain-containing protein [Nannochloropsis gaditana] >gi|585112709|gb|EWM30076.1| major facilitator superfamily domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query:    1 MPSPDPTNQNPVKDAALSQGQPSLRTAHTTWGGSYIMPKAPPSLSGPNSAAEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEMEQVEEEEDGQSEDKGKSASGEGSWRGWRAYFQGLCNLDFFVWLVGYEGKGRVCEFDGLSHSKPSSCSLSFSRWPHAPCTSPSSSFRPLRSSICRQIIISARDKQPLPPHSSTFLEFSLAHFWGDVWTENWAKGKEMSGYACLADLGLPDLC 497
            MPSPDPTNQNPVKDAALSQGQPSLRTAHTTWGGSYIMPKAPPSLSGPNSAAEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEMEQVEEEEDGQSEDKGKSASGEGSWRGWRAYFQGLCNLDFFVWLVGYEGKGRVCEFDGLSHSKPSSCSLSFSRWPHAPCTSPSSSFRPLRSSICRQIIISARDKQPLPPHSSTFLEFSLAHFWGDVWTENWAKGKEMSGYACLADLGLPDLC
Sbjct:    1 MPSPDPTNQNPVKDAALSQGQPSLRTAHTTWGGSYIMPKAPPSLSGPNSAAEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEMEQVEEEEDGQSEDKGKSASGEGSWRGWRAYFQGLCNLDFFVWLVGYEGKGRVCEFDGLSHSKPSSCSLSFSRWPHAPCTSPSSSFRPLRSSICRQIIISARDKQPLPPHSSTFLEFSLAHFWGDVWTENWAKGKEMSGYACLADLGLPDLC 497          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|585103286|gb|EWM22710.1| (major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 184.882 bits (468), Expect = 6.585e-48
Identity = 114/310 (36.77%), Postives = 178/310 (57.42%), Query Frame = 0
Query:   65 RSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEME----QVEEEEDGQSEDKGKSASGEGSW 370
            +S  + ++ +L  P+LSR+A+S    AP SD P +  +    +L    VK  +EA+ LC+PGT  ++ ++  AC I  G   ++ +L AVS  +M    M+  TYG +SGLP++ +IFA  +GG ++D +GADK+CVL++ I +LG+   + +V +RS+ LL   Q++LG+G   L   Q VF++LA DP +  F FA++ +   A  F  F LSPL+ ++S YG+ AS+W  T +  LSFL   P+LGKL+H+ P L+A       EE E  +  +   E +    + EE   G +         EGSW
Sbjct:   74 QSFMVRQLESLRAPSLSRVALS---GAP-SDIPDVGLMLPHVDL---DVK-TEEAKMLCIPGTRWHMLLVVLACSIAFGPSFSRSILSAVSADVMLAFGMTKATYGALSGLPAIPNIFASPIGGAIVDRLGADKSCVLYSGITVLGSICLSTAVYIRSVHLLAAAQILLGIGRGTLVIAQKVFLKLAADPKETSFLFALSFSISHAGMFMAFFLSPLIEDNSPYGYLASVWASTGITVLSFLCTIPLLGKLRHILPLLRA-------EEQESFLADEEEEEEDGKAGEAEERGGGPTASSRWDRREEGSW 368          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|553193835|ref|XP_005855840.1| (major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana CCMP526] >gi|422293213|gb|EKU20513.1| major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.341 bits (464), Expect = 2.158e-47
Identity = 103/260 (39.62%), Postives = 162/260 (62.31%), Query Frame = 0
Query:   65 RSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKA 324
            +S  + ++ +L  P+LSR+A+S    AP SD P +  +    +L    VK  +EA+ LC+PGT  ++ ++  AC I  G   ++ +L AVS  +M    M+  TYG +SGLP++ +IFA  +GG ++D +GADK+CVL++ I +LG+   + +V +RS+ LL   Q++LG+G   L   Q VF++LA DP +  F FA++ +   A  F  F LSPL+ ++S YG+ AS+W  T +  LSFL   P+LGKL+H+ P L+A
Sbjct:   74 QSFMVRQLESLRAPSLSRVALS---GAP-SDIPDVGLMLPHVDL---DVK-TEEAKMLCIPGTRWHMLLVVLACSIAFGPSFSRSILSAVSADVMLAFGMTKATYGALSGLPAIPNIFASPIGGAIVDRLGADKSCVLYSGITVLGSICLSTAVYIRSVHLLAAAQILLGIGRGTLVIAQKVFLKLAADPKETSFLFALSFSISHAGMFMAFFLSPLIEDNSPYGYLASVWASTGITVLSFLCTIPLLGKLRHILPLLRA 325          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|224001012|ref|XP_002290178.1| (transporter belonging to the MFS superfamily [Thalassiosira pseudonana CCMP1335] >gi|220973600|gb|EED91930.1| transporter belonging to the MFS superfamily [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 74.3294 bits (181), Expect = 1.698e-10
Identity = 50/180 (27.78%), Postives = 85/180 (47.22%), Query Frame = 0
Query:  132 FILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIK---TYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSA 308
             +LG  C +M GS  A ++  A+  QL  +MP S      + ++  + S+ ++   L GG  +D  GA +   LF F V  G+ + ++ V+ +S  L+  G+   G+G + L   Q        +  +V F   +  +  R  S    I+SP VA S+    + S W+G +L  +S L A
Sbjct:   52 LVLGLTCVVMTGSYYAYDIPSALHEQLQEYMPQSASFETRFNLLYTVYSIPNVILPLFGGNFVDRFGAPRCLALFAFTVFCGSVLLSIGVANKSWHLMYFGRFTFGLGAESLCVAQSTITSEWFEGKEVAFAMGIGLSVSRLGSIWNNIVSPKVANSA--NIEISFWIGAVLTLVSLLLA 229          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|403346132|gb|EJY72450.1| (Major facilitator superfamily protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 72.0182 bits (175), Expect = 8.018e-10
Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 0
Query:  133 ILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLV---AESSTYGFQASMWMGTILCFLSFLSAF 309
            IL   CF+   +        +++ +L+    ++   YG++  + S+ +IF  LV G VID +G  K+ + F FI+L G  +  +S  + S  L L+G+++LG+  + LG   ++ I L     ++GF  A+     +A +  + +LSP +   A+S TY     +  G +L  ++F+ AF
Sbjct:   52 ILALVCFMKFSTYFLTNTPGSITQELLEKYEITNVEYGMLFSIYSIPNIFLSLVTGLVIDRMGIRKSTICFNFIILFGQGLFALSSYIESYYLALIGRLILGIATESLGVAVVIIINLWFQNKEIGFACAILITISKAGTSMSNLLSPQIMVAADSITY----VLCFGFLLQSIAFICAF 227          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|1160562377|ref|XP_020430078.1| (hypothetical protein PPL_08595 [Polysphondylium pallidum PN500] >gi|281203754|gb|EFA77950.1| hypothetical protein PPL_08595 [Polysphondylium pallidum PN500])

HSP 1 Score: 68.5514 bits (166), Expect = 1.251e-8
Identity = 55/218 (25.23%), Postives = 102/218 (46.79%), Query Frame = 0
Query:  161 HMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILMKSNLEMEQVEEEEDGQSEDKGKSASGEGSWRGWRAYFQ 378
            H  M    +  +  + +L ++F  ++GG ++D  G +K  ++F  I+ L   +  +SVS  S  LLL  +V+LG+G + +      FI        V F   + S+  + AS  +F + P +  +S    Q +MW  TI+  ++ +S F  +   K L+ F     V VG++   E +   +N+  E+  E++D   E+  K    E   +  R  ++
Sbjct:  140 HYNMDSSQFSKLYTVYALPNLFMVILGGILVDLFGPNKCSLVFQTILFLSTVLTAISVSNASYGLLLFSKVLLGIGGETILVCISAFIAKWFSANDVPFVLGLESSWVQIASLMSFAVLPSLYNAS--NLQFTMWFITIVSIIALVSNFVFVIFQKRLK-FRDEVYVSVGDDIENEKVNQTNNINNERDNEKDD---EELAKQKELESMTKTERLVYE 351          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|661179430|emb|CDH57922.1| (predicted protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 67.781 bits (164), Expect = 2.294e-8
Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 0
Query:  134 LGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIR--LACD-------PAKVGFYFAVASAAYRAASF-GTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHL 318
            L CA F+ VGS  A   L A+   +     ++   YGV+    S+ +    + GG  +DA G  K  ++ T ++ +GN + ++S   +S+S +++G+++ G+     GSG +V ++  + C           +GF   V+    R ASF     + P+   +  YG+    W   +LC  S +     LG +KHL
Sbjct:  170 LACALFLAVGSHFAAHTLGAMKNIIKEEFGITNSEYGVLQSSVSIVNTILPVFGGVFLDAFGTAKGSIITTALITIGNVLVSLSTHSKSMSTMVMGRILYGI-----GSGNVVIVQETILCQWFHGRDLAGVIGFMLTVS----RLASFMAQATVIPIAESTGWYGY--GFWFSALLCLFSLVINLVYLGLMKHL 353          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|1183504706|gb|ORZ28274.1| (major facilitator superfamily domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 65.4698 bits (158), Expect = 1.298e-7
Identity = 62/283 (21.91%), Postives = 129/283 (45.58%), Query Frame = 0
Query:   34 SYIMPKAPPSLSGPNSAAEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGSAPFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTY----GVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAK---VGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAF 309
            S++  + P  L   N  + GG    R     +  +++++ T+  P  +  A  ++        P    +        + V+ +++A  +    T  +  +L  AC ++ G+    ++  A++VQL   +     T+     ++    SL +I   ++GG +ID + A +  VLF+  + LG ++  + VS++S+ ++++G+++ G+G + L   Q    ++  D  K   +GF   +  ++ R A+     LSP +A     G   + W G  +C LS L  F
Sbjct:    2 SFLDEQTP--LISSNRESIGGDRLGRNTKNNKGLYVSDLGTIHCPDNNNFA-PHLQHDDILPRPNRQHLQQLLHQRFDRVRRHEQAHVI----TTRHWVVLTLACLLLFGNYYCYDIPAALNVQLEEWLGADYATHQYHLNLLYSAYSLPNIVLPVLGGYLIDRLSASRMLVLFSLCICLGQSIFAIGVSVKSIWVMVLGRLIFGIGGECLEIAQ---AKITTDWFKARWLGFALGMNLSSARIATAINDNLSPAIATHGG-GVIGASWAGVGICVLSLLCGF 273          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|1134869639|gb|OMJ68155.1| (hypothetical protein SteCoe_34476 [Stentor coeruleus])

HSP 1 Score: 64.6994 bits (156), Expect = 1.523e-7
Identity = 44/159 (27.67%), Postives = 80/159 (50.31%), Query Frame = 0
Query:  153 AVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPM 311
            A+  QL   + +    Y +   + S  +I   ++GG ++D IG     ++FT ++LLG A+ T SV + +  + L G+ + G+G + L   Q   I       +V F   +A+   R ++       P++ E ++ GF  S+ +G ILC +SF+SA  +
Sbjct:   58 ALQTQLQHTLGIDSIKYNLFYSVYSFPNIIIPILGGYLVDRIGNRNCNIVFTLLILLGQALFTFSVIIDNYPMALAGRCLFGIGGESLNISQYNVIIGWAHAKEVSFVLGLAATLNRLSTAANDNAIPIIQEKTSLGF--SLCIGVILCGISFMSAIIL 214          
BLAST of EWM30075.1 vs. NCBI_GenBank
Match: gi|673023934|ref|XP_008865928.1| (hypothetical protein H310_03735 [Aphanomyces invadans] >gi|574479156|gb|ETW06151.1| hypothetical protein H310_03735 [Aphanomyces invadans])

HSP 1 Score: 62.7734 bits (151), Expect = 6.959e-7
Identity = 46/186 (24.73%), Postives = 88/186 (47.31%), Query Frame = 0
Query:  132 FILGCACFIMVGSVAAKEVLMAVSVQLMAH---MPMSIKT--YGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPML 312
             IL  +C +M+G+    +   A+  QL  H   +P       Y ++  L S+ +I     GG ++D +GA    +LF  I+  G  +  +  S    +++L+G+V+ G+G + LG  Q   +       ++     +  +  R  S     LSP +A  S Y   +++W+G I+C +S ++A  ++
Sbjct:   11 LILFLSCTLMIGNYYCFDNPAALKSQLQQHFNNLPADRYEFLYNLLYTLYSIPNIILPFCGGFLVDRLGARVTLLLFAGIITTGQVVFAIGCSTTQFNIMLLGRVLFGLGGESLGVAQSTLVASWFKNKELAMALGINLSIARLGSVFNNELSPEIA--SEYNVSSALWVGVIMCGVSLIAALTLI 194          
The following BLAST results are available for this feature:
BLAST of EWM30075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112708|gb|EWM30075.1|0.000e+0100.00major facilitator superfamily domain-containing pr... [more]
gi|585103286|gb|EWM22710.1|6.585e-4836.77major facilitator superfamily domain-containing pr... [more]
gi|553193835|ref|XP_005855840.1|2.158e-4739.62major facilitator superfamily domain-containing pr... [more]
gi|224001012|ref|XP_002290178.1|1.698e-1027.78transporter belonging to the MFS superfamily [Thal... [more]
gi|403346132|gb|EJY72450.1|8.018e-1027.78Major facilitator superfamily protein (macronuclea... [more]
gi|1160562377|ref|XP_020430078.1|1.251e-825.23hypothetical protein PPL_08595 [Polysphondylium pa... [more]
gi|661179430|emb|CDH57922.1|2.294e-826.67predicted protein [Lichtheimia corymbifera JMRC:FS... [more]
gi|1183504706|gb|ORZ28274.1|1.298e-721.91major facilitator superfamily domain-containing pr... [more]
gi|1134869639|gb|OMJ68155.1|1.523e-727.67hypothetical protein SteCoe_34476 [Stentor coerule... [more]
gi|673023934|ref|XP_008865928.1|6.959e-724.73hypothetical protein H310_03735 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna598rna598Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications