rna5973, rna5973 (mRNA) Nannochloropsis gaditana

Overview
Namerna5973
Unique Namerna5973
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length606
Alignment locationCM002467.1:249484..250282 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101966g1.8587.mrna
Orig protein idgnl|cribi|Naga_101966g1.8587
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:249484..250282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101966g1gene5771Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5973rna5973-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24715.1cds5958Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5973 ID=rna5973|Name=rna5973|organism=Nannochloropsis gaditana|type=mRNA|length=606bp
CATAAATAAGCTGAGATATTCGTCTTCCCGATTCCTCACGCACGCAGGCT
TTTGTCGGACCGACACCGCTCCCTCCGCGTCTGCTGTGGGAACAAAGTGG
GCGTGGGAGGGCCGCGGGGCATGGTTGAGGACACGAGCATAGTCCCATTC
ACGCCGACATAAGCGCAAGAATCGAGCAAGGGCTGAATCAGCAGGCAACA
CCTTGACCAGGGTGGGAGTGGCCCCTCCCGACTCCACCACTGCCGAGCAT
GGTCCTTCAAGCTTTTGTGGACAGGCTGAGAGGGGTGCAAGAAATCACTG
TCAAGCGCCTGTATAAATTCGTGCTCAAGAAGGCGCTGGGCAAGTTCCTG
GCGGGCCAGCTGGGGGTGGACCAGCTCGATGTGAAATTTATCGTTTTGGA
GGACGACACGACGTCTGCTCCTCCGTCCCCTGGGGCCCCACCGGCCCGAC
GGGGGTACGTCCAGCTCCGCGACATTGTGATGAATGTGGAGGCCGTGAAC
GCCTTGTTGACGGACCAACCTTTCAAACTGCACCGGGGAAGGCTGGGGAA
GGTGGAAGTCCGGGTATGCTACGAGCAGGTCTTGCGGGAGGGGATGGAGG
TGGCGG
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protein sequence of rna5973

>rna5973-protein ID=rna5973-protein|Name=rna5973|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MEEEGQIDFKIGFSSHPGAQVAKLDVRFQRPPPRCACASTCSQGACTPTP
RTAVWRGRCRFIQTSV
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mRNA from alignment at CM002467.1:249484..250282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5973 ID=rna5973|Name=rna5973|organism=Nannochloropsis gaditana|type=mRNA|length=799bp|location=Sequence derived from alignment at CM002467.1:249484..250282+ (Nannochloropsis gaditana)
atggaggaggagggacagatcGATTTCAAGATCGGTTTCTCCTCTCATCC
AGGAGCGCAGGTGGCGAAGCTGGACGTTCGTTTCCAGGTAGatgcgccct
ccctccctccctctgtccctccctccttccctcatcccccgCGAATCAAA
TCTCGCTGTCTGTCATCTTCCTTTTCTATCACCCCTTCGTCTAACCTTTC
TCAGAGCTCACGCTAGGCCGGTGATGGACGTCTCacctcctttgcttcct
ccctccctcccctcctccctccctcgaagATGAAGCACATTCgctgctcc
ctctctcccaacCCCCTTCGAGACCTCCTTCACTTGGGGCGTaccctcgc
ccccttccctccgcatcacggtaggcaggaaggaaggttGTGGGGGGAGC
TGGGTCCCTTGCTGGCTTGGGGCGACGACCTTCCGGACGTGGGGGAACTG
gattgggaggaggttgaagtTGCCTTAAAAAGATACGCGCACCAGCGCGG
GCTGGCGGCCCGGGagaaggcgcgggagggcggggaggaggaagtggagg
aggatgagttCTTCGACTGCACAAGTGGGCCGGAGGAAATCTTGTCACGG
TCAAtgcacgagggagggagggagggcggggccgagggaggtagggaggg
agggcccccTGGatcgtctccctctttgcccccagcgacctccccctcgg
tgCGCTTGCGCCTCGACGTGTTCTCAGGGAGCCTGCACGCCTACGCCTCG
GACGGCAGTCTGGCGAGGGCGATGCCGTTTCATTCAAACGTCCGTTTAA
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Coding sequence (CDS) from alignment at CM002467.1:249484..250282+

>rna5973 ID=rna5973|Name=rna5973|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002467.1:249484..250282+ (Nannochloropsis gaditana)
atggaggaggagggacagatcGATTTCAAGATCGGTTTCTCCTCTCATCC
AGGAGCGCAGGTGGCGAAGCTGGACGTTCGTTTCCAGcgacctccccctc
ggtgCGCTTGCGCCTCGACGTGTTCTCAGGGAGCCTGCACGCCTACGCCT
CGGACGGCAGTCTGGCGAGGGCGATGCCGTTTCATTCAAACGTCCGTTTA
AatggaggaggagggacagatcGATTTCAAGATCGGTTTCTCCTCTCATC
CAGGAGCGCAGGTGGCGAAGCTGGACGTTCGTTTCCAGcgacctccccct
cggtgCGCTTGCGCCTCGACGTGTTCTCAGGGAGCCTGCACGCCTACGCC
TCGGACGGCAGTCTGGCGAGGGCGATGCCGTTTCATTCAAACGTCCGTTT
AA
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Synonyms
Publications